RNA–Protein interactions for RNA: ENST00000617054.1

NEK3-207, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 3,256 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-207ENST00000617054 TARBP1Q13395 1621 aaKnown RBP12.04□□□□□ -0.48
NEK3-207ENST00000617054 ATP1B4Q9UN42 357 aaPredicted RBP12.04□□□□□ -0.48
NEK3-207ENST00000617054 ARHGAP35Q9NRY4 1499 aa12.03□□□□□ -0.48
NEK3-207ENST00000617054 WDR97A6NE52 1622 aa12.03□□□□□ -0.48
NEK3-207ENST00000617054 KANK4Q5T7N3 995 aaPredicted RBP12.02□□□□□ -0.49
NEK3-207ENST00000617054 ABCA5Q8WWZ7 1642 aa12.01□□□□□ -0.49
NEK3-207ENST00000617054 WDR62O43379 1518 aa11.99□□□□□ -0.49
NEK3-207ENST00000617054 FBLN2P98095 1184 aa11.99□□□□□ -0.49
NEK3-207ENST00000617054 SLC4A1APQ9BWU0 796 aaKnown RBP11.98□□□□□ -0.49
NEK3-207ENST00000617054 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.97□□□□□ -0.49
NEK3-207ENST00000617054 FHOD3Q2V2M9 1422 aa11.96□□□□□ -0.5
NEK3-207ENST00000617054 HNRNPUL2Q1KMD3 747 aaKnown RBP11.96□□□□□ -0.5
NEK3-207ENST00000617054 CUL7Q14999 1698 aa11.95□□□□□ -0.5
NEK3-207ENST00000617054 THOC2Q8NI27 1593 aaKnown RBP11.95□□□□□ -0.5
NEK3-207ENST00000617054 IFT140Q96RY7 1462 aa11.95□□□□□ -0.5
NEK3-207ENST00000617054 ZBTB22O15209 634 aa11.94□□□□□ -0.5
NEK3-207ENST00000617054 PBRM1Q86U86 1689 aa11.92□□□□□ -0.5
NEK3-207ENST00000617054 GRIN2BQ13224 1484 aa11.92□□□□□ -0.5
NEK3-207ENST00000617054 ARID3CA6NKF2 412 aa11.9□□□□□ -0.5
NEK3-207ENST00000617054 SNAPC4Q5SXM2 1469 aa11.9□□□□□ -0.5
NEK3-207ENST00000617054 FHAD1B1AJZ9 1412 aa11.9□□□□□ -0.5
NEK3-207ENST00000617054 CHMP7Q8WUX9 453 aaPredicted RBP11.9□□□□□ -0.5
NEK3-207ENST00000617054 EIF4G3O43432 1585 aaKnown RBP11.89□□□□□ -0.51
NEK3-207ENST00000617054 CTTNBP2Q8WZ74 1663 aa11.87□□□□□ -0.51
NEK3-207ENST00000617054 SENP3Q9H4L4 574 aaPredicted RBP11.87□□□□□ -0.51
NEK3-207ENST00000617054 ITGAEP38570 1179 aa11.86□□□□□ -0.51
NEK3-207ENST00000617054 ADAMTS12P58397 1594 aa11.86□□□□□ -0.51
NEK3-207ENST00000617054 CCER1Q8TC90 406 aaPredicted RBP11.86□□□□□ -0.51
NEK3-207ENST00000617054 PCF11O94913 1555 aaKnown RBP11.82□□□□□ -0.52
NEK3-207ENST00000617054 GRIN2AQ12879 1464 aa11.8□□□□□ -0.52
NEK3-207ENST00000617054 IQGAP2Q13576 1575 aa11.78□□□□□ -0.52
NEK3-207ENST00000617054 EFCAB5A4FU69 1503 aa11.78□□□□□ -0.52
NEK3-207ENST00000617054 TIAM1Q13009 1591 aa11.77□□□□□ -0.52
NEK3-207ENST00000617054 FMN1Q68DA7 1419 aa11.76□□□□□ -0.53
NEK3-207ENST00000617054 SAMD9Q5K651 1589 aa11.76□□□□□ -0.53
NEK3-207ENST00000617054 LRRC9Q6ZRR7 1453 aa11.76□□□□□ -0.53
NEK3-207ENST00000617054 CASKIN1Q8WXD9 1431 aa11.76□□□□□ -0.53
NEK3-207ENST00000617054 SYNJ2O15056 1496 aa11.76□□□□□ -0.53
NEK3-207ENST00000617054 MAGI1Q96QZ7 1491 aaPredicted RBP11.75□□□□□ -0.53
NEK3-207ENST00000617054 PHLDB1Q86UU1 1377 aa11.75□□□□□ -0.53
NEK3-207ENST00000617054 FAM50AQ14320 339 aaKnown RBP11.75□□□□□ -0.53
NEK3-207ENST00000617054 JPH4Q96JJ6 628 aa11.75□□□□□ -0.53
NEK3-207ENST00000617054 KIAA0586Q9BVV6 1533 aa11.74□□□□□ -0.53
NEK3-207ENST00000617054 CEP170Q5SW79 1584 aa11.74□□□□□ -0.53
NEK3-207ENST00000617054 FYCO1Q9BQS8 1478 aa11.73□□□□□ -0.53
NEK3-207ENST00000617054 CCNB3Q8WWL7 1395 aa11.72□□□□□ -0.53
NEK3-207ENST00000617054 MTUS2Q5JR59 1369 aa11.71□□□□□ -0.53
NEK3-207ENST00000617054 DISP1Q96F81 1524 aa11.71□□□□□ -0.53
NEK3-207ENST00000617054 LRRIQ1Q96JM4 1722 aa11.71□□□□□ -0.54
NEK3-207ENST00000617054 ZEB1P37275 1124 aaPredicted RBP11.7□□□□□ -0.54
NEK3-207ENST00000617054 RRBP1Q9P2E9 1410 aaKnown RBP11.69□□□□□ -0.54
NEK3-207ENST00000617054 UGGT2Q9NYU1 1516 aa11.68□□□□□ -0.54
NEK3-207ENST00000617054 CDK13Q14004 1512 aaKnown RBP11.68□□□□□ -0.54
NEK3-207ENST00000617054 MAP3K1Q13233 1512 aa11.68□□□□□ -0.54
NEK3-207ENST00000617054 CFAP43Q8NDM7 1665 aa11.67□□□□□ -0.54
NEK3-207ENST00000617054 NUP160Q12769 1436 aa11.66□□□□□ -0.54
NEK3-207ENST00000617054 KIAA0556O60303 1618 aa11.66□□□□□ -0.54
NEK3-207ENST00000617054 MAGI3Q5TCQ9 1506 aa11.65□□□□□ -0.54
NEK3-207ENST00000617054 PRKCSHP14314 528 aaPredicted RBP11.65□□□□□ -0.54
NEK3-207ENST00000617054 PLB1Q6P1J6 1458 aa11.65□□□□□ -0.54
NEK3-207ENST00000617054 EPRSP07814 1512 aaKnown RBP11.63□□□□□ -0.55
NEK3-207ENST00000617054 CHD1O14646 1710 aa11.63□□□□□ -0.55
NEK3-207ENST00000617054 PRG4Q92954 1404 aaPredicted RBP11.62□□□□□ -0.55
NEK3-207ENST00000617054 NCOA2Q15596 1464 aa11.61□□□□□ -0.55
NEK3-207ENST00000617054 CARMIL2Q6F5E8 1435 aa11.6□□□□□ -0.55
NEK3-207ENST00000617054 NUP153P49790 1475 aaKnown RBP11.6□□□□□ -0.55
NEK3-207ENST00000617054 CHIC2Q9UKJ5 165 aa11.59□□□□□ -0.55
NEK3-207ENST00000617054 HECW1Q76N89 1606 aa11.59□□□□□ -0.55
NEK3-207ENST00000617054 FGD6Q6ZV73 1430 aa11.58□□□□□ -0.56
NEK3-207ENST00000617054 RAB3GAP2Q9H2M9 1393 aa11.57□□□□□ -0.56
NEK3-207ENST00000617054 CCDC18Q5T9S5 1454 aa11.57□□□□□ -0.56
NEK3-207ENST00000617054 ZNF644Q9H582 1327 aaPredicted RBP11.56□□□□□ -0.56
NEK3-207ENST00000617054 RAPGEF6Q8TEU7 1601 aa11.56□□□□□ -0.56
NEK3-207ENST00000617054 ERCC6L2Q5T890 1561 aa11.56□□□□□ -0.56
NEK3-207ENST00000617054 PTPRGP23470 1445 aa11.55□□□□□ -0.56
NEK3-207ENST00000617054 DHX57Q6P158 1386 aaKnown RBP11.55□□□□□ -0.56
NEK3-207ENST00000617054 PTPRKQ15262 1439 aa11.55□□□□□ -0.56
NEK3-207ENST00000617054 MYOM3Q5VTT5 1437 aa11.55□□□□□ -0.56
NEK3-207ENST00000617054 ZNF777Q9ULD5 760 aaPredicted RBP11.54□□□□□ -0.56
NEK3-207ENST00000617054 EHBP1L1Q8N3D4 1523 aa11.54□□□□□ -0.56
NEK3-207ENST00000617054 SUPT6HQ7KZ85 1726 aaKnown RBP11.54□□□□□ -0.56
NEK3-207ENST00000617054 RRP7BPQ9NSQ0 103 aa11.54□□□□□ -0.56
NEK3-207ENST00000617054 CDK11AQ9UQ88 783 aaPredicted RBP11.53□□□□□ -0.56
NEK3-207ENST00000617054 NPM3O75607 178 aaKnown RBP11.53□□□□□ -0.56
NEK3-207ENST00000617054 SETD5Q9C0A6 1442 aa11.51□□□□□ -0.57
NEK3-207ENST00000617054 PLEKHD1A6NEE1 506 aa11.51□□□□□ -0.57
NEK3-207ENST00000617054 ATP10BO94823 1461 aa11.5□□□□□ -0.57
NEK3-207ENST00000617054 ARHGEF11O15085 1522 aa11.48□□□□□ -0.57
NEK3-207ENST00000617054 KCNH8Q96L42 1107 aa11.48□□□□□ -0.57
NEK3-207ENST00000617054 PTPN23Q9H3S7 1636 aa11.48□□□□□ -0.57
NEK3-207ENST00000617054 CFDP1Q9UEE9 299 aaPredicted RBP11.48□□□□□ -0.57
NEK3-207ENST00000617054 NEUROD1Q13562 356 aa11.47□□□□□ -0.57
NEK3-207ENST00000617054 SIN3AQ96ST3 1273 aa11.47□□□□□ -0.57
NEK3-207ENST00000617054 AMER1Q5JTC6 1135 aaPredicted RBP11.47□□□□□ -0.57
NEK3-207ENST00000617054 KIF14Q15058 1648 aa11.46□□□□□ -0.57
NEK3-207ENST00000617054 ABCA8O94911 1581 aa11.46□□□□□ -0.57
NEK3-207ENST00000617054 TROQ12816 1431 aaPredicted RBP11.46□□□□□ -0.57
NEK3-207ENST00000617054 PPP4R3CPQ6ZMV5 832 aa11.46□□□□□ -0.58
NEK3-207ENST00000617054 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.44□□□□□ -0.58
NEK3-207ENST00000617054 UACAQ9BZF9 1416 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms