RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 SHROOM2Q13796 1616 aa22.64■■□□□ 1.22
LINC00540-202ENST00000616974 PRXQ9BXM0 1461 aa22.64■■□□□ 1.22
LINC00540-202ENST00000616974 ARAP1Q96P48 1450 aa22.63■■□□□ 1.21
LINC00540-202ENST00000616974 CSRNP3Q8WYN3 585 aa22.62■■□□□ 1.21
LINC00540-202ENST00000616974 EHMT2Q96KQ7 1210 aa22.61■■□□□ 1.21
LINC00540-202ENST00000616974 CYB5RLQ6IPT4 315 aa22.58■■□□□ 1.21
LINC00540-202ENST00000616974 KIAA0586Q9BVV6 1533 aa22.57■■□□□ 1.2
LINC00540-202ENST00000616974 JPH4Q96JJ6 628 aa22.56■■□□□ 1.2
LINC00540-202ENST00000616974 PRG4Q92954 1404 aaPredicted RBP22.54■■□□□ 1.2
LINC00540-202ENST00000616974 CTTNBP2Q8WZ74 1663 aa22.53■■□□□ 1.2
LINC00540-202ENST00000616974 IQGAP2Q13576 1575 aa22.52■■□□□ 1.2
LINC00540-202ENST00000616974 EEA1Q15075 1411 aa22.52■■□□□ 1.19
LINC00540-202ENST00000616974 KIF21BO75037 1637 aa22.43■■□□□ 1.18
LINC00540-202ENST00000616974 TTBK1Q5TCY1 1321 aaPredicted RBP22.42■■□□□ 1.18
LINC00540-202ENST00000616974 DISP1Q96F81 1524 aa22.41■■□□□ 1.18
LINC00540-202ENST00000616974 RANGAP1P46060 587 aaPredicted RBP22.38■■□□□ 1.17
LINC00540-202ENST00000616974 UGGT2Q9NYU1 1516 aa22.36■■□□□ 1.17
LINC00540-202ENST00000616974 KIAA0556O60303 1618 aa22.33■■□□□ 1.17
LINC00540-202ENST00000616974 P3H3Q8IVL6 736 aa22.3■■□□□ 1.16
LINC00540-202ENST00000616974 GOLGA3Q08378 1498 aa22.28■■□□□ 1.16
LINC00540-202ENST00000616974 ADCY10Q96PN6 1610 aa22.26■■□□□ 1.15
LINC00540-202ENST00000616974 UBTFP17480 764 aaKnown RBP22.26■■□□□ 1.15
LINC00540-202ENST00000616974 CARMIL2Q6F5E8 1435 aa22.25■■□□□ 1.15
LINC00540-202ENST00000616974 TNIKQ9UKE5 1360 aa22.23■■□□□ 1.15
LINC00540-202ENST00000616974 PTPRGP23470 1445 aa22.23■■□□□ 1.15
LINC00540-202ENST00000616974 SAMD9Q5K651 1589 aa22.22■■□□□ 1.15
LINC00540-202ENST00000616974 LOC105371045A0A1W2PR82 267 aa22.16■■□□□ 1.14
LINC00540-202ENST00000616974 PLB1Q6P1J6 1458 aa22.16■■□□□ 1.14
LINC00540-202ENST00000616974 FHOD3Q2V2M9 1422 aa22.16■■□□□ 1.14
LINC00540-202ENST00000616974 UACAQ9BZF9 1416 aa22.09■■□□□ 1.13
LINC00540-202ENST00000616974 ARHGAP35Q9NRY4 1499 aa22.08■■□□□ 1.13
LINC00540-202ENST00000616974 ARID3CA6NKF2 412 aa22.08■■□□□ 1.13
LINC00540-202ENST00000616974 ABCC2Q92887 1545 aa22.07■■□□□ 1.12
LINC00540-202ENST00000616974 ABCA8O94911 1581 aa22.07■■□□□ 1.12
LINC00540-202ENST00000616974 TRHP20396 242 aaPredicted RBP22.04■■□□□ 1.12
LINC00540-202ENST00000616974 ZCCHC11Q5TAX3 1644 aaKnown RBP22.02■■□□□ 1.12
LINC00540-202ENST00000616974 EFCAB5A4FU69 1503 aa22.02■■□□□ 1.12
LINC00540-202ENST00000616974 KIF13AQ9H1H9 1805 aa22.02■■□□□ 1.12
LINC00540-202ENST00000616974 UHRF1BP1LA0JNW5 1464 aa22.01■■□□□ 1.11
LINC00540-202ENST00000616974 KDM5BQ9UGL1 1544 aa21.98■■□□□ 1.11
LINC00540-202ENST00000616974 RAPGEF6Q8TEU7 1601 aa21.98■■□□□ 1.11
LINC00540-202ENST00000616974 MAPKBP1O60336 1514 aa21.96■■□□□ 1.11
LINC00540-202ENST00000616974 NPM1P06748 294 aaKnown RBP eCLIP21.94■■□□□ 1.1
LINC00540-202ENST00000616974 CLIP1P30622 1438 aa21.93■■□□□ 1.1
LINC00540-202ENST00000616974 NUP153P49790 1475 aaKnown RBP21.93■■□□□ 1.1
LINC00540-202ENST00000616974 ASXL2Q76L83 1435 aa21.92■■□□□ 1.1
LINC00540-202ENST00000616974 LRRIQ1Q96JM4 1722 aa21.92■■□□□ 1.1
LINC00540-202ENST00000616974 DIP2BQ9P265 1576 aa21.91■■□□□ 1.1
LINC00540-202ENST00000616974 CEP162Q5TB80 1403 aa21.9■■□□□ 1.1
LINC00540-202ENST00000616974 ATP10BO94823 1461 aa21.9■■□□□ 1.1
LINC00540-202ENST00000616974 TSPOAP1O95153 1857 aa21.88■■□□□ 1.09
LINC00540-202ENST00000616974 ABCC10Q5T3U5 1492 aa21.87■■□□□ 1.09
LINC00540-202ENST00000616974 CDK13Q14004 1512 aaKnown RBP21.86■■□□□ 1.09
LINC00540-202ENST00000616974 FAM69CQ0P6D2 419 aa21.85■■□□□ 1.09
LINC00540-202ENST00000616974 PCF11O94913 1555 aaKnown RBP21.85■■□□□ 1.09
LINC00540-202ENST00000616974 ATP1B4Q9UN42 357 aaPredicted RBP21.83■■□□□ 1.08
LINC00540-202ENST00000616974 FMN1Q68DA7 1419 aa21.8■■□□□ 1.08
LINC00540-202ENST00000616974 WDR7Q9Y4E6 1490 aa21.79■■□□□ 1.08
LINC00540-202ENST00000616974 EPRSP07814 1512 aaKnown RBP21.79■■□□□ 1.08
LINC00540-202ENST00000616974 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.79■■□□□ 1.08
LINC00540-202ENST00000616974 HNRNPUL2Q1KMD3 747 aaKnown RBP21.79■■□□□ 1.08
LINC00540-202ENST00000616974 KCNH8Q96L42 1107 aa21.79■■□□□ 1.08
LINC00540-202ENST00000616974 PPRC1Q5VV67 1664 aaKnown RBP21.76■■□□□ 1.07
LINC00540-202ENST00000616974 HECW1Q76N89 1606 aa21.75■■□□□ 1.07
LINC00540-202ENST00000616974 CASKIN1Q8WXD9 1431 aa21.7■■□□□ 1.07
LINC00540-202ENST00000616974 MAP3K4Q9Y6R4 1608 aa21.7■■□□□ 1.06
LINC00540-202ENST00000616974 GLI2P10070 1586 aa21.69■■□□□ 1.06
LINC00540-202ENST00000616974 MAGI3Q5TCQ9 1506 aa21.68■■□□□ 1.06
LINC00540-202ENST00000616974 FYCO1Q9BQS8 1478 aa21.65■■□□□ 1.06
LINC00540-202ENST00000616974 KIF14Q15058 1648 aa21.64■■□□□ 1.05
LINC00540-202ENST00000616974 TTC37Q6PGP7 1564 aa21.62■■□□□ 1.05
LINC00540-202ENST00000616974 CFAP43Q8NDM7 1665 aa21.61■■□□□ 1.05
LINC00540-202ENST00000616974 ABCA9Q8IUA7 1624 aa21.6■■□□□ 1.05
LINC00540-202ENST00000616974 PLEKHD1A6NEE1 506 aa21.6■■□□□ 1.05
LINC00540-202ENST00000616974 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.59■■□□□ 1.05
LINC00540-202ENST00000616974 CD109Q6YHK3 1445 aa21.58■■□□□ 1.05
LINC00540-202ENST00000616974 VPS8Q8N3P4 1428 aa21.57■■□□□ 1.04
LINC00540-202ENST00000616974 COL17A1Q9UMD9 1497 aaPredicted RBP21.55■■□□□ 1.04
LINC00540-202ENST00000616974 CCDC18Q5T9S5 1454 aa21.54■■□□□ 1.04
LINC00540-202ENST00000616974 TROQ12816 1431 aaPredicted RBP21.52■■□□□ 1.04
LINC00540-202ENST00000616974 KDM6BO15054 1643 aa21.49■■□□□ 1.03
LINC00540-202ENST00000616974 TIAM1Q13009 1591 aa21.46■■□□□ 1.03
LINC00540-202ENST00000616974 CDK11AQ9UQ88 783 aaPredicted RBP21.44■■□□□ 1.02
LINC00540-202ENST00000616974 MYO5CQ9NQX4 1742 aa21.44■■□□□ 1.02
LINC00540-202ENST00000616974 CDC42BPBQ9Y5S2 1711 aa21.44■■□□□ 1.02
LINC00540-202ENST00000616974 CDC42BPAQ5VT25 1732 aa21.43■■□□□ 1.02
LINC00540-202ENST00000616974 KANK4Q5T7N3 995 aaPredicted RBP21.43■■□□□ 1.02
LINC00540-202ENST00000616974 TEX14Q8IWB6 1497 aa21.43■■□□□ 1.02
LINC00540-202ENST00000616974 MTUS2Q5JR59 1369 aa21.4■■□□□ 1.02
LINC00540-202ENST00000616974 FANCAO15360 1455 aa21.38■■□□□ 1.01
LINC00540-202ENST00000616974 PLCH2O75038 1416 aa21.37■■□□□ 1.01
LINC00540-202ENST00000616974 RAPGEF3O95398 923 aa21.36■■□□□ 1.01
LINC00540-202ENST00000616974 PREX2Q70Z35 1606 aa21.36■■□□□ 1.01
LINC00540-202ENST00000616974 EHBP1L1Q8N3D4 1523 aa21.35■■□□□ 1.01
LINC00540-202ENST00000616974 FRMPD1Q5SYB0 1578 aa21.34■■□□□ 1.01
LINC00540-202ENST00000616974 LRRC9Q6ZRR7 1453 aa21.34■■□□□ 1.01
LINC00540-202ENST00000616974 ARHGAP5Q13017 1502 aa21.33■■□□□ 1.01
LINC00540-202ENST00000616974 AKNAQ7Z591 1439 aa21.33■■□□□ 1
LINC00540-202ENST00000616974 GPATCH8Q9UKJ3 1502 aaKnown RBP21.32■■□□□ 1
LINC00540-202ENST00000616974 NEO1Q92859 1461 aa21.32■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms