RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 PRG4Q92954 1404 aaPredicted RBP19.79■□□□□ 0.76
LINC00539-204ENST00000608957 JPH4Q96JJ6 628 aa19.78■□□□□ 0.76
LINC00539-204ENST00000608957 KIAA0586Q9BVV6 1533 aa19.76■□□□□ 0.75
LINC00539-204ENST00000608957 TRHP20396 242 aaPredicted RBP19.67■□□□□ 0.74
LINC00539-204ENST00000608957 RAPGEF2Q9Y4G8 1499 aa19.66■□□□□ 0.74
LINC00539-204ENST00000608957 IQGAP2Q13576 1575 aa19.66■□□□□ 0.74
LINC00539-204ENST00000608957 ADCY10Q96PN6 1610 aa19.62■□□□□ 0.73
LINC00539-204ENST00000608957 CTTNBP2Q8WZ74 1663 aa19.6■□□□□ 0.73
LINC00539-204ENST00000608957 KIF13AQ9H1H9 1805 aa19.58■□□□□ 0.72
LINC00539-204ENST00000608957 PRXQ9BXM0 1461 aa19.57■□□□□ 0.72
LINC00539-204ENST00000608957 DISP1Q96F81 1524 aa19.56■□□□□ 0.72
LINC00539-204ENST00000608957 UGGT2Q9NYU1 1516 aa19.55■□□□□ 0.72
LINC00539-204ENST00000608957 KIAA0556O60303 1618 aa19.5■□□□□ 0.71
LINC00539-204ENST00000608957 CARMIL2Q6F5E8 1435 aa19.5■□□□□ 0.71
LINC00539-204ENST00000608957 TNIKQ9UKE5 1360 aa19.49■□□□□ 0.71
LINC00539-204ENST00000608957 PTPRGP23470 1445 aa19.49■□□□□ 0.71
LINC00539-204ENST00000608957 MAPKBP1O60336 1514 aa19.46■□□□□ 0.71
LINC00539-204ENST00000608957 TTBK1Q5TCY1 1321 aaPredicted RBP19.45■□□□□ 0.7
LINC00539-204ENST00000608957 DIP2BQ9P265 1576 aa19.42■□□□□ 0.7
LINC00539-204ENST00000608957 CSRNP3Q8WYN3 585 aa19.42■□□□□ 0.7
LINC00539-204ENST00000608957 ABCC10Q5T3U5 1492 aa19.41■□□□□ 0.7
LINC00539-204ENST00000608957 UHRF1BP1LA0JNW5 1464 aa19.4■□□□□ 0.7
LINC00539-204ENST00000608957 EEA1Q15075 1411 aa19.39■□□□□ 0.69
LINC00539-204ENST00000608957 ABCC2Q92887 1545 aa19.39■□□□□ 0.69
LINC00539-204ENST00000608957 UACAQ9BZF9 1416 aa19.38■□□□□ 0.69
LINC00539-204ENST00000608957 NPM1P06748 294 aaKnown RBP eCLIP19.37■□□□□ 0.69
LINC00539-204ENST00000608957 CHIC1Q5VXU3 224 aa19.37■□□□□ 0.69
LINC00539-204ENST00000608957 ZCCHC11Q5TAX3 1644 aaKnown RBP19.33■□□□□ 0.69
LINC00539-204ENST00000608957 TSPOAP1O95153 1857 aa19.33■□□□□ 0.69
LINC00539-204ENST00000608957 GOLGA3Q08378 1498 aa19.33■□□□□ 0.68
LINC00539-204ENST00000608957 FAM69CQ0P6D2 419 aa19.32■□□□□ 0.68
LINC00539-204ENST00000608957 FAM9AQ8IZU1 332 aaPredicted RBP19.32■□□□□ 0.68
LINC00539-204ENST00000608957 KDM5BQ9UGL1 1544 aa19.31■□□□□ 0.68
LINC00539-204ENST00000608957 KIF21BO75037 1637 aa19.31■□□□□ 0.68
LINC00539-204ENST00000608957 ABCA8O94911 1581 aa19.31■□□□□ 0.68
LINC00539-204ENST00000608957 PLB1Q6P1J6 1458 aa19.3■□□□□ 0.68
LINC00539-204ENST00000608957 SAMD9Q5K651 1589 aa19.3■□□□□ 0.68
LINC00539-204ENST00000608957 ASXL2Q76L83 1435 aa19.29■□□□□ 0.68
LINC00539-204ENST00000608957 PPRC1Q5VV67 1664 aaKnown RBP19.26■□□□□ 0.67
LINC00539-204ENST00000608957 GLI2P10070 1586 aa19.23■□□□□ 0.67
LINC00539-204ENST00000608957 P3H3Q8IVL6 736 aa19.22■□□□□ 0.67
LINC00539-204ENST00000608957 EPRSP07814 1512 aaKnown RBP19.2■□□□□ 0.66
LINC00539-204ENST00000608957 MAP3K4Q9Y6R4 1608 aa19.18■□□□□ 0.66
LINC00539-204ENST00000608957 WDR7Q9Y4E6 1490 aa19.16■□□□□ 0.66
LINC00539-204ENST00000608957 RAPGEF6Q8TEU7 1601 aa19.14■□□□□ 0.66
LINC00539-204ENST00000608957 FHOD3Q2V2M9 1422 aa19.14■□□□□ 0.65
LINC00539-204ENST00000608957 KDM6BO15054 1643 aa19.14■□□□□ 0.65
LINC00539-204ENST00000608957 RANGAP1P46060 587 aaPredicted RBP19.13■□□□□ 0.65
LINC00539-204ENST00000608957 EHMT2Q96KQ7 1210 aa19.12■□□□□ 0.65
LINC00539-204ENST00000608957 ATP10BO94823 1461 aa19.11■□□□□ 0.65
LINC00539-204ENST00000608957 EFCAB5A4FU69 1503 aa19.1■□□□□ 0.65
LINC00539-204ENST00000608957 CFAP43Q8NDM7 1665 aa19.08■□□□□ 0.64
LINC00539-204ENST00000608957 ARID3CA6NKF2 412 aa19.07■□□□□ 0.64
LINC00539-204ENST00000608957 NUP153P49790 1475 aaKnown RBP19.06■□□□□ 0.64
LINC00539-204ENST00000608957 UBTFP17480 764 aaKnown RBP19.03■□□□□ 0.64
LINC00539-204ENST00000608957 COL17A1Q9UMD9 1497 aaPredicted RBP19.03■□□□□ 0.64
LINC00539-204ENST00000608957 ARHGAP35Q9NRY4 1499 aa19.02■□□□□ 0.63
LINC00539-204ENST00000608957 KCNH8Q96L42 1107 aa19.01■□□□□ 0.63
LINC00539-204ENST00000608957 TEX14Q8IWB6 1497 aa18.99■□□□□ 0.63
LINC00539-204ENST00000608957 ABCA9Q8IUA7 1624 aa18.98■□□□□ 0.63
LINC00539-204ENST00000608957 MAGI3Q5TCQ9 1506 aa18.98■□□□□ 0.63
LINC00539-204ENST00000608957 CD109Q6YHK3 1445 aa18.98■□□□□ 0.63
LINC00539-204ENST00000608957 CDK13Q14004 1512 aaKnown RBP18.94■□□□□ 0.62
LINC00539-204ENST00000608957 LRRIQ1Q96JM4 1722 aa18.94■□□□□ 0.62
LINC00539-204ENST00000608957 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.89■□□□□ 0.61
LINC00539-204ENST00000608957 HNRNPUL2Q1KMD3 747 aaKnown RBP18.89■□□□□ 0.61
LINC00539-204ENST00000608957 HECW1Q76N89 1606 aa18.89■□□□□ 0.61
LINC00539-204ENST00000608957 FMN1Q68DA7 1419 aa18.88■□□□□ 0.61
LINC00539-204ENST00000608957 TTC37Q6PGP7 1564 aa18.85■□□□□ 0.61
LINC00539-204ENST00000608957 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.84■□□□□ 0.61
LINC00539-204ENST00000608957 PCF11O94913 1555 aaKnown RBP18.83■□□□□ 0.6
LINC00539-204ENST00000608957 AEBP2Q6ZN18 517 aaPredicted RBP18.82■□□□□ 0.6
LINC00539-204ENST00000608957 ARAP3Q8WWN8 1544 aa18.82■□□□□ 0.6
LINC00539-204ENST00000608957 KDM4FA0A1W2PPD8 638 aa18.81■□□□□ 0.6
LINC00539-204ENST00000608957 PLEKHD1A6NEE1 506 aa18.81■□□□□ 0.6
LINC00539-204ENST00000608957 FRMPD1Q5SYB0 1578 aa18.79■□□□□ 0.6
LINC00539-204ENST00000608957 KIF14Q15058 1648 aa18.78■□□□□ 0.6
LINC00539-204ENST00000608957 NEO1Q92859 1461 aa18.77■□□□□ 0.6
LINC00539-204ENST00000608957 ATP1B4Q9UN42 357 aaPredicted RBP18.77■□□□□ 0.6
LINC00539-204ENST00000608957 CLIP1P30622 1438 aa18.76■□□□□ 0.59
LINC00539-204ENST00000608957 CASKIN1Q8WXD9 1431 aa18.74■□□□□ 0.59
LINC00539-204ENST00000608957 RICTORQ6R327 1708 aa18.74■□□□□ 0.59
LINC00539-204ENST00000608957 ADGRL1O94910 1474 aa18.73■□□□□ 0.59
LINC00539-204ENST00000608957 PHLDB1Q86UU1 1377 aa18.73■□□□□ 0.59
LINC00539-204ENST00000608957 MYO5CQ9NQX4 1742 aa18.73■□□□□ 0.59
LINC00539-204ENST00000608957 CFAP74Q9C0B2 1584 aa18.72■□□□□ 0.59
LINC00539-204ENST00000608957 TROQ12816 1431 aaPredicted RBP18.71■□□□□ 0.59
LINC00539-204ENST00000608957 FANCAO15360 1455 aa18.71■□□□□ 0.59
LINC00539-204ENST00000608957 RAPGEF3O95398 923 aa18.7■□□□□ 0.58
LINC00539-204ENST00000608957 FYCO1Q9BQS8 1478 aa18.7■□□□□ 0.58
LINC00539-204ENST00000608957 AKNAQ7Z591 1439 aa18.69■□□□□ 0.58
LINC00539-204ENST00000608957 CCDC18Q5T9S5 1454 aa18.68■□□□□ 0.58
LINC00539-204ENST00000608957 PLCH2O75038 1416 aa18.67■□□□□ 0.58
LINC00539-204ENST00000608957 CDC42BPBQ9Y5S2 1711 aa18.67■□□□□ 0.58
LINC00539-204ENST00000608957 CDK11AQ9UQ88 783 aaPredicted RBP18.64■□□□□ 0.57
LINC00539-204ENST00000608957 CEP162Q5TB80 1403 aa18.64■□□□□ 0.57
LINC00539-204ENST00000608957 DENND4BO75064 1496 aaPredicted RBP18.64■□□□□ 0.57
LINC00539-204ENST00000608957 CDC42BPAQ5VT25 1732 aa18.62■□□□□ 0.57
LINC00539-204ENST00000608957 PREX2Q70Z35 1606 aa18.61■□□□□ 0.57
LINC00539-204ENST00000608957 ZMYM4Q5VZL5 1548 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms