RNA–Protein interactions for RNA: ENST00000607482.5

CTSA-217, Transcript of cathepsin A, humanhuman

TSL 3

Gene CTSA, Length 403 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-217ENST00000607482 ERCC6L2Q5T890 1561 aa32.68■■■□□ 2.82
CTSA-217ENST00000607482 SHROOM2Q13796 1616 aa32.67■■■□□ 2.82
CTSA-217ENST00000607482 RUSC2Q8N2Y8 1516 aa32.61■■■□□ 2.81
CTSA-217ENST00000607482 KIAA0586Q9BVV6 1533 aa32.57■■■□□ 2.8
CTSA-217ENST00000607482 NPM1P06748 294 aaKnown RBP eCLIP32.43■■■□□ 2.78
CTSA-217ENST00000607482 RAPGEF2Q9Y4G8 1499 aa32.42■■■□□ 2.78
CTSA-217ENST00000607482 TTBK1Q5TCY1 1321 aaPredicted RBP32.4■■■□□ 2.78
CTSA-217ENST00000607482 CARMIL2Q6F5E8 1435 aa32.36■■■□□ 2.77
CTSA-217ENST00000607482 IQGAP2Q13576 1575 aa32.32■■■□□ 2.77
CTSA-217ENST00000607482 PTPRGP23470 1445 aa32.28■■■□□ 2.76
CTSA-217ENST00000607482 TNIKQ9UKE5 1360 aa32.22■■■□□ 2.75
CTSA-217ENST00000607482 CSRNP3Q8WYN3 585 aa32.15■■■□□ 2.74
CTSA-217ENST00000607482 ADCY10Q96PN6 1610 aa32.13■■■□□ 2.73
CTSA-217ENST00000607482 PRXQ9BXM0 1461 aa32.11■■■□□ 2.73
CTSA-217ENST00000607482 FAM69CQ0P6D2 419 aa32.09■■■□□ 2.73
CTSA-217ENST00000607482 UGGT2Q9NYU1 1516 aa32.09■■■□□ 2.73
CTSA-217ENST00000607482 DISP1Q96F81 1524 aa32.07■■■□□ 2.72
CTSA-217ENST00000607482 FAM9AQ8IZU1 332 aaPredicted RBP32.07■■■□□ 2.72
CTSA-217ENST00000607482 CTTNBP2Q8WZ74 1663 aa32.05■■■□□ 2.72
CTSA-217ENST00000607482 EEA1Q15075 1411 aa32.03■■■□□ 2.72
CTSA-217ENST00000607482 MAPKBP1O60336 1514 aa32.02■■■□□ 2.72
CTSA-217ENST00000607482 GOLGA3Q08378 1498 aa32.01■■■□□ 2.71
CTSA-217ENST00000607482 UACAQ9BZF9 1416 aa32■■■□□ 2.71
CTSA-217ENST00000607482 KIAA0556O60303 1618 aa31.98■■■□□ 2.71
CTSA-217ENST00000607482 ABCC10Q5T3U5 1492 aa31.97■■■□□ 2.71
CTSA-217ENST00000607482 ABCC2Q92887 1545 aa31.95■■■□□ 2.71
CTSA-217ENST00000607482 KIF13AQ9H1H9 1805 aa31.93■■■□□ 2.7
CTSA-217ENST00000607482 UHRF1BP1LA0JNW5 1464 aa31.91■■■□□ 2.7
CTSA-217ENST00000607482 CHIC1Q5VXU3 224 aa31.9■■■□□ 2.7
CTSA-217ENST00000607482 DIP2BQ9P265 1576 aa31.85■■■□□ 2.69
CTSA-217ENST00000607482 RANGAP1P46060 587 aaPredicted RBP31.85■■■□□ 2.69
CTSA-217ENST00000607482 P3H3Q8IVL6 736 aa31.85■■■□□ 2.69
CTSA-217ENST00000607482 ASXL2Q76L83 1435 aa31.83■■■□□ 2.69
CTSA-217ENST00000607482 PLB1Q6P1J6 1458 aa31.83■■■□□ 2.69
CTSA-217ENST00000607482 EHMT2Q96KQ7 1210 aa31.76■■■□□ 2.67
CTSA-217ENST00000607482 KDM5BQ9UGL1 1544 aa31.75■■■□□ 2.67
CTSA-217ENST00000607482 TSPOAP1O95153 1857 aa31.7■■■□□ 2.67
CTSA-217ENST00000607482 ZCCHC11Q5TAX3 1644 aaKnown RBP31.7■■■□□ 2.66
CTSA-217ENST00000607482 UBTFP17480 764 aaKnown RBP31.69■■■□□ 2.66
CTSA-217ENST00000607482 KIF21BO75037 1637 aa31.65■■■□□ 2.66
CTSA-217ENST00000607482 ARID3CA6NKF2 412 aa31.65■■■□□ 2.66
CTSA-217ENST00000607482 ABCA8O94911 1581 aa31.64■■■□□ 2.65
CTSA-217ENST00000607482 KCNH8Q96L42 1107 aa31.62■■■□□ 2.65
CTSA-217ENST00000607482 GLI2P10070 1586 aa31.6■■■□□ 2.65
CTSA-217ENST00000607482 EPRSP07814 1512 aaKnown RBP31.59■■■□□ 2.65
CTSA-217ENST00000607482 WDR7Q9Y4E6 1490 aa31.59■■■□□ 2.65
CTSA-217ENST00000607482 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.59■■■□□ 2.65
CTSA-217ENST00000607482 HNRNPUL2Q1KMD3 747 aaKnown RBP31.59■■■□□ 2.65
CTSA-217ENST00000607482 AEBP2Q6ZN18 517 aaPredicted RBP31.59■■■□□ 2.65
CTSA-217ENST00000607482 SAMD9Q5K651 1589 aa31.58■■■□□ 2.65
CTSA-217ENST00000607482 KDM6BO15054 1643 aa31.56■■■□□ 2.64
CTSA-217ENST00000607482 FHOD3Q2V2M9 1422 aa31.51■■■□□ 2.64
CTSA-217ENST00000607482 TEX14Q8IWB6 1497 aa31.47■■■□□ 2.63
CTSA-217ENST00000607482 EFCAB5A4FU69 1503 aa31.45■■■□□ 2.63
CTSA-217ENST00000607482 RAPGEF6Q8TEU7 1601 aa31.45■■■□□ 2.62
CTSA-217ENST00000607482 ATP10BO94823 1461 aa31.44■■■□□ 2.62
CTSA-217ENST00000607482 MAP3K4Q9Y6R4 1608 aa31.43■■■□□ 2.62
CTSA-217ENST00000607482 CD109Q6YHK3 1445 aa31.41■■■□□ 2.62
CTSA-217ENST00000607482 ATP1B4Q9UN42 357 aaPredicted RBP31.37■■■□□ 2.61
CTSA-217ENST00000607482 PPRC1Q5VV67 1664 aaKnown RBP31.37■■■□□ 2.61
CTSA-217ENST00000607482 PLEKHD1A6NEE1 506 aa31.32■■■□□ 2.6
CTSA-217ENST00000607482 NUP153P49790 1475 aaKnown RBP31.31■■■□□ 2.6
CTSA-217ENST00000607482 CFAP43Q8NDM7 1665 aa31.31■■■□□ 2.6
CTSA-217ENST00000607482 MAGI3Q5TCQ9 1506 aa31.26■■■□□ 2.59
CTSA-217ENST00000607482 FMN1Q68DA7 1419 aa31.24■■■□□ 2.59
CTSA-217ENST00000607482 ARHGAP35Q9NRY4 1499 aa31.2■■■□□ 2.58
CTSA-217ENST00000607482 COL17A1Q9UMD9 1497 aaPredicted RBP31.19■■■□□ 2.58
CTSA-217ENST00000607482 ABCA9Q8IUA7 1624 aa31.13■■■□□ 2.57
CTSA-217ENST00000607482 CDK11AQ9UQ88 783 aaPredicted RBP31.13■■■□□ 2.57
CTSA-217ENST00000607482 HECW1Q76N89 1606 aa31.09■■■□□ 2.57
CTSA-217ENST00000607482 PHLDB1Q86UU1 1377 aa31.08■■■□□ 2.57
CTSA-217ENST00000607482 CDK13Q14004 1512 aaKnown RBP31.08■■■□□ 2.57
CTSA-217ENST00000607482 KDM4FA0A1W2PPD8 638 aa31.02■■■□□ 2.56
CTSA-217ENST00000607482 ARAP3Q8WWN8 1544 aa31■■■□□ 2.55
CTSA-217ENST00000607482 NEO1Q92859 1461 aa31■■■□□ 2.55
CTSA-217ENST00000607482 CLIP1P30622 1438 aa30.98■■■□□ 2.55
CTSA-217ENST00000607482 RAPGEF3O95398 923 aa30.96■■■□□ 2.55
CTSA-217ENST00000607482 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.94■■■□□ 2.54
CTSA-217ENST00000607482 FANCAO15360 1455 aa30.91■■■□□ 2.54
CTSA-217ENST00000607482 ADGRL1O94910 1474 aa30.9■■■□□ 2.54
CTSA-217ENST00000607482 CASKIN1Q8WXD9 1431 aa30.9■■■□□ 2.54
CTSA-217ENST00000607482 TTC37Q6PGP7 1564 aa30.88■■■□□ 2.53
CTSA-217ENST00000607482 AKNAQ7Z591 1439 aa30.87■■■□□ 2.53
CTSA-217ENST00000607482 CFAP74Q9C0B2 1584 aa30.87■■■□□ 2.53
CTSA-217ENST00000607482 CCDC18Q5T9S5 1454 aa30.85■■■□□ 2.53
CTSA-217ENST00000607482 TROQ12816 1431 aaPredicted RBP30.84■■■□□ 2.53
CTSA-217ENST00000607482 PCF11O94913 1555 aaKnown RBP30.83■■■□□ 2.53
CTSA-217ENST00000607482 DENND4BO75064 1496 aaPredicted RBP30.83■■■□□ 2.53
CTSA-217ENST00000607482 EFCAB2Q5VUJ9 269 aa30.82■■■□□ 2.52
CTSA-217ENST00000607482 KIF14Q15058 1648 aa30.82■■■□□ 2.52
CTSA-217ENST00000607482 PLCH2O75038 1416 aa30.81■■■□□ 2.52
CTSA-217ENST00000607482 FYCO1Q9BQS8 1478 aa30.8■■■□□ 2.52
CTSA-217ENST00000607482 ARID4BQ4LE39 1312 aaPredicted RBP30.78■■■□□ 2.52
CTSA-217ENST00000607482 LRRIQ1Q96JM4 1722 aa30.73■■■□□ 2.51
CTSA-217ENST00000607482 MYO5CQ9NQX4 1742 aa30.73■■■□□ 2.51
CTSA-217ENST00000607482 CEP162Q5TB80 1403 aa30.72■■■□□ 2.51
CTSA-217ENST00000607482 SCAPERQ9BY12 1400 aa30.72■■■□□ 2.51
CTSA-217ENST00000607482 ARHGAP5Q13017 1502 aa30.71■■■□□ 2.51
CTSA-217ENST00000607482 FRMPD1Q5SYB0 1578 aa30.68■■■□□ 2.5
CTSA-217ENST00000607482 MYT1LQ9UL68 1186 aa30.68■■■□□ 2.5
Retrieved 100 of 20,778 RNA–protein pairs in 119.9 ms