RNA–Protein interactions for RNA: ENST00000607212.1

CTSA-216, Transcript of cathepsin A, humanhuman

TSL 4

Gene CTSA, Length 590 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-216ENST00000607212 KIF27Q86VH2 1401 aa25.96■■□□□ 1.75
CTSA-216ENST00000607212 NPM1P06748 294 aaKnown RBP eCLIP25.95■■□□□ 1.74
CTSA-216ENST00000607212 CUL7Q14999 1698 aa25.92■■□□□ 1.74
CTSA-216ENST00000607212 KIF13AQ9H1H9 1805 aa25.91■■□□□ 1.74
CTSA-216ENST00000607212 IGF1RP08069 1367 aa25.87■■□□□ 1.73
CTSA-216ENST00000607212 KIAA0586Q9BVV6 1533 aa25.85■■□□□ 1.73
CTSA-216ENST00000607212 TTBK1Q5TCY1 1321 aaPredicted RBP25.83■■□□□ 1.73
CTSA-216ENST00000607212 FAM69CQ0P6D2 419 aa25.82■■□□□ 1.72
CTSA-216ENST00000607212 ADCY10Q96PN6 1610 aa25.79■■□□□ 1.72
CTSA-216ENST00000607212 CARMIL1Q5VZK9 1371 aa25.77■■□□□ 1.72
CTSA-216ENST00000607212 MAPKBP1O60336 1514 aa25.74■■□□□ 1.71
CTSA-216ENST00000607212 ABCC10Q5T3U5 1492 aa25.74■■□□□ 1.71
CTSA-216ENST00000607212 DIP2BQ9P265 1576 aa25.69■■□□□ 1.7
CTSA-216ENST00000607212 PTPRGP23470 1445 aa25.69■■□□□ 1.7
CTSA-216ENST00000607212 CARMIL2Q6F5E8 1435 aa25.68■■□□□ 1.7
CTSA-216ENST00000607212 TSPOAP1O95153 1857 aa25.68■■□□□ 1.7
CTSA-216ENST00000607212 IQGAP2Q13576 1575 aa25.65■■□□□ 1.7
CTSA-216ENST00000607212 TNIKQ9UKE5 1360 aa25.62■■□□□ 1.69
CTSA-216ENST00000607212 KDM6BO15054 1643 aa25.57■■□□□ 1.68
CTSA-216ENST00000607212 RAPGEF2Q9Y4G8 1499 aa25.53■■□□□ 1.68
CTSA-216ENST00000607212 ABCC2Q92887 1545 aa25.52■■□□□ 1.68
CTSA-216ENST00000607212 ASXL2Q76L83 1435 aa25.47■■□□□ 1.67
CTSA-216ENST00000607212 UACAQ9BZF9 1416 aa25.47■■□□□ 1.67
CTSA-216ENST00000607212 DISP1Q96F81 1524 aa25.46■■□□□ 1.67
CTSA-216ENST00000607212 PLB1Q6P1J6 1458 aa25.46■■□□□ 1.67
CTSA-216ENST00000607212 UHRF1BP1LA0JNW5 1464 aa25.42■■□□□ 1.66
CTSA-216ENST00000607212 UGGT2Q9NYU1 1516 aa25.42■■□□□ 1.66
CTSA-216ENST00000607212 KIAA0556O60303 1618 aa25.41■■□□□ 1.66
CTSA-216ENST00000607212 CTTNBP2Q8WZ74 1663 aa25.39■■□□□ 1.65
CTSA-216ENST00000607212 GLI2P10070 1586 aa25.35■■□□□ 1.65
CTSA-216ENST00000607212 ZCCHC11Q5TAX3 1644 aaKnown RBP25.35■■□□□ 1.65
CTSA-216ENST00000607212 PPRC1Q5VV67 1664 aaKnown RBP25.32■■□□□ 1.64
CTSA-216ENST00000607212 KDM5BQ9UGL1 1544 aa25.32■■□□□ 1.64
CTSA-216ENST00000607212 EPRSP07814 1512 aaKnown RBP25.29■■□□□ 1.64
CTSA-216ENST00000607212 GOLGA3Q08378 1498 aa25.28■■□□□ 1.64
CTSA-216ENST00000607212 KDM4FA0A1W2PPD8 638 aa25.26■■□□□ 1.63
CTSA-216ENST00000607212 MAP3K4Q9Y6R4 1608 aa25.25■■□□□ 1.63
CTSA-216ENST00000607212 TEX14Q8IWB6 1497 aa25.24■■□□□ 1.63
CTSA-216ENST00000607212 FAM9AQ8IZU1 332 aaPredicted RBP25.21■■□□□ 1.63
CTSA-216ENST00000607212 WDR7Q9Y4E6 1490 aa25.21■■□□□ 1.63
CTSA-216ENST00000607212 KCNH8Q96L42 1107 aa25.18■■□□□ 1.62
CTSA-216ENST00000607212 PRXQ9BXM0 1461 aa25.16■■□□□ 1.62
CTSA-216ENST00000607212 ABCA8O94911 1581 aa25.14■■□□□ 1.61
CTSA-216ENST00000607212 ARID3CA6NKF2 412 aa25.13■■□□□ 1.61
CTSA-216ENST00000607212 P3H3Q8IVL6 736 aa25.13■■□□□ 1.61
CTSA-216ENST00000607212 ADGRL1O94910 1474 aa25.11■■□□□ 1.61
CTSA-216ENST00000607212 COL17A1Q9UMD9 1497 aaPredicted RBP25.11■■□□□ 1.61
CTSA-216ENST00000607212 CFAP43Q8NDM7 1665 aa25.09■■□□□ 1.61
CTSA-216ENST00000607212 CD109Q6YHK3 1445 aa25.08■■□□□ 1.61
CTSA-216ENST00000607212 CSRNP3Q8WYN3 585 aa25.04■■□□□ 1.6
CTSA-216ENST00000607212 RANGAP1P46060 587 aaPredicted RBP25.03■■□□□ 1.6
CTSA-216ENST00000607212 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25■■□□□ 1.59
CTSA-216ENST00000607212 HNRNPUL2Q1KMD3 747 aaKnown RBP25■■□□□ 1.59
CTSA-216ENST00000607212 MAGI3Q5TCQ9 1506 aa25■■□□□ 1.59
CTSA-216ENST00000607212 ATP10BO94823 1461 aa24.93■■□□□ 1.58
CTSA-216ENST00000607212 SAMD9Q5K651 1589 aa24.93■■□□□ 1.58
CTSA-216ENST00000607212 RAPGEF6Q8TEU7 1601 aa24.92■■□□□ 1.58
CTSA-216ENST00000607212 EEA1Q15075 1411 aa24.89■■□□□ 1.58
CTSA-216ENST00000607212 KIF21BO75037 1637 aa24.86■■□□□ 1.57
CTSA-216ENST00000607212 ABCA9Q8IUA7 1624 aa24.83■■□□□ 1.57
CTSA-216ENST00000607212 FHOD3Q2V2M9 1422 aa24.83■■□□□ 1.57
CTSA-216ENST00000607212 ARAP3Q8WWN8 1544 aa24.8■■□□□ 1.56
CTSA-216ENST00000607212 HECW2Q9P2P5 1572 aa24.8■■□□□ 1.56
CTSA-216ENST00000607212 EHMT2Q96KQ7 1210 aa24.77■■□□□ 1.56
CTSA-216ENST00000607212 NUP153P49790 1475 aaKnown RBP24.76■■□□□ 1.55
CTSA-216ENST00000607212 PHLDB1Q86UU1 1377 aa24.75■■□□□ 1.55
CTSA-216ENST00000607212 PLEKHD1A6NEE1 506 aa24.74■■□□□ 1.55
CTSA-216ENST00000607212 RAPGEF3O95398 923 aa24.74■■□□□ 1.55
CTSA-216ENST00000607212 NEO1Q92859 1461 aa24.72■■□□□ 1.55
CTSA-216ENST00000607212 ARID4BQ4LE39 1312 aaPredicted RBP24.69■■□□□ 1.54
CTSA-216ENST00000607212 EFCAB5A4FU69 1503 aa24.69■■□□□ 1.54
CTSA-216ENST00000607212 UBTFP17480 764 aaKnown RBP24.67■■□□□ 1.54
CTSA-216ENST00000607212 ILDR1Q86SU0 546 aaPredicted RBP24.66■■□□□ 1.54
CTSA-216ENST00000607212 ATP1B4Q9UN42 357 aaPredicted RBP24.66■■□□□ 1.54
CTSA-216ENST00000607212 CFAP74Q9C0B2 1584 aa24.62■■□□□ 1.53
CTSA-216ENST00000607212 FRMPD1Q5SYB0 1578 aa24.61■■□□□ 1.53
CTSA-216ENST00000607212 DENND4BO75064 1496 aaPredicted RBP24.59■■□□□ 1.53
CTSA-216ENST00000607212 FANCAO15360 1455 aa24.58■■□□□ 1.53
CTSA-216ENST00000607212 CDK13Q14004 1512 aaKnown RBP24.58■■□□□ 1.53
CTSA-216ENST00000607212 AKNAQ7Z591 1439 aa24.58■■□□□ 1.53
CTSA-216ENST00000607212 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.57■■□□□ 1.52
CTSA-216ENST00000607212 ADAMTSL3P82987 1691 aa24.57■■□□□ 1.52
CTSA-216ENST00000607212 TTC37Q6PGP7 1564 aa24.56■■□□□ 1.52
CTSA-216ENST00000607212 PTPRMP28827 1452 aa24.56■■□□□ 1.52
CTSA-216ENST00000607212 BCORL1Q5H9F3 1711 aa24.55■■□□□ 1.52
CTSA-216ENST00000607212 RICTORQ6R327 1708 aa24.54■■□□□ 1.52
CTSA-216ENST00000607212 ARHGEF40Q8TER5 1519 aa24.53■■□□□ 1.52
CTSA-216ENST00000607212 MADDQ8WXG6 1647 aa24.53■■□□□ 1.52
CTSA-216ENST00000607212 HECW1Q76N89 1606 aa24.51■■□□□ 1.51
CTSA-216ENST00000607212 PLPPR3Q6T4P5 718 aa24.51■■□□□ 1.51
CTSA-216ENST00000607212 FMN1Q68DA7 1419 aa24.5■■□□□ 1.51
CTSA-216ENST00000607212 RIMS1Q86UR5 1692 aaKnown RBP24.48■■□□□ 1.51
CTSA-216ENST00000607212 CHIC1Q5VXU3 224 aa24.46■■□□□ 1.51
CTSA-216ENST00000607212 CDK11AQ9UQ88 783 aaPredicted RBP24.46■■□□□ 1.51
CTSA-216ENST00000607212 ZFYVE16Q7Z3T8 1539 aa24.45■■□□□ 1.51
CTSA-216ENST00000607212 POGZQ7Z3K3 1410 aa24.44■■□□□ 1.5
CTSA-216ENST00000607212 MYO5CQ9NQX4 1742 aa24.43■■□□□ 1.5
CTSA-216ENST00000607212 ARHGAP35Q9NRY4 1499 aa24.43■■□□□ 1.5
CTSA-216ENST00000607212 MLECQ14165 292 aa24.42■■□□□ 1.5
CTSA-216ENST00000607212 ZMYM4Q5VZL5 1548 aa24.41■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms