RNA–Protein interactions for RNA: ENST00000601662.5

USE1-210, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 4

Gene USE1, Length 559 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-210ENST00000601662 ERCC6L2Q5T890 1561 aa23.96■■□□□ 1.43
USE1-210ENST00000601662 PRG4Q92954 1404 aaPredicted RBP23.93■■□□□ 1.42
USE1-210ENST00000601662 KIAA0586Q9BVV6 1533 aa23.9■■□□□ 1.42
USE1-210ENST00000601662 RAPGEF2Q9Y4G8 1499 aa23.9■■□□□ 1.42
USE1-210ENST00000601662 SHROOM2Q13796 1616 aa23.9■■□□□ 1.42
USE1-210ENST00000601662 FAM9AQ8IZU1 332 aaPredicted RBP23.88■■□□□ 1.41
USE1-210ENST00000601662 CSRNP3Q8WYN3 585 aa23.84■■□□□ 1.41
USE1-210ENST00000601662 EEA1Q15075 1411 aa23.81■■□□□ 1.4
USE1-210ENST00000601662 TTBK1Q5TCY1 1321 aaPredicted RBP23.79■■□□□ 1.4
USE1-210ENST00000601662 PRXQ9BXM0 1461 aa23.77■■□□□ 1.4
USE1-210ENST00000601662 TRHP20396 242 aaPredicted RBP23.75■■□□□ 1.39
USE1-210ENST00000601662 IQGAP2Q13576 1575 aa23.74■■□□□ 1.39
USE1-210ENST00000601662 CARMIL2Q6F5E8 1435 aa23.69■■□□□ 1.38
USE1-210ENST00000601662 EHMT2Q96KQ7 1210 aa23.65■■□□□ 1.38
USE1-210ENST00000601662 PTPRGP23470 1445 aa23.65■■□□□ 1.38
USE1-210ENST00000601662 TNIKQ9UKE5 1360 aa23.62■■□□□ 1.37
USE1-210ENST00000601662 CTTNBP2Q8WZ74 1663 aa23.6■■□□□ 1.37
USE1-210ENST00000601662 NPM1P06748 294 aaKnown RBP eCLIP23.6■■□□□ 1.37
USE1-210ENST00000601662 DISP1Q96F81 1524 aa23.59■■□□□ 1.37
USE1-210ENST00000601662 UGGT2Q9NYU1 1516 aa23.59■■□□□ 1.37
USE1-210ENST00000601662 RANGAP1P46060 587 aaPredicted RBP23.57■■□□□ 1.36
USE1-210ENST00000601662 P3H3Q8IVL6 736 aa23.53■■□□□ 1.36
USE1-210ENST00000601662 KIAA0556O60303 1618 aa23.51■■□□□ 1.35
USE1-210ENST00000601662 ADCY10Q96PN6 1610 aa23.5■■□□□ 1.35
USE1-210ENST00000601662 GOLGA3Q08378 1498 aa23.49■■□□□ 1.35
USE1-210ENST00000601662 UBTFP17480 764 aaKnown RBP23.49■■□□□ 1.35
USE1-210ENST00000601662 KIF21BO75037 1637 aa23.47■■□□□ 1.35
USE1-210ENST00000601662 UACAQ9BZF9 1416 aa23.44■■□□□ 1.34
USE1-210ENST00000601662 ABCC2Q92887 1545 aa23.38■■□□□ 1.33
USE1-210ENST00000601662 FAM69CQ0P6D2 419 aa23.37■■□□□ 1.33
USE1-210ENST00000601662 UHRF1BP1LA0JNW5 1464 aa23.36■■□□□ 1.33
USE1-210ENST00000601662 PLB1Q6P1J6 1458 aa23.36■■□□□ 1.33
USE1-210ENST00000601662 LOC105371045A0A1W2PR82 267 aa23.34■■□□□ 1.33
USE1-210ENST00000601662 MAPKBP1O60336 1514 aa23.33■■□□□ 1.33
USE1-210ENST00000601662 ARID3CA6NKF2 412 aa23.31■■□□□ 1.32
USE1-210ENST00000601662 SAMD9Q5K651 1589 aa23.3■■□□□ 1.32
USE1-210ENST00000601662 FHOD3Q2V2M9 1422 aa23.29■■□□□ 1.32
USE1-210ENST00000601662 ABCC10Q5T3U5 1492 aa23.29■■□□□ 1.32
USE1-210ENST00000601662 ASXL2Q76L83 1435 aa23.27■■□□□ 1.32
USE1-210ENST00000601662 KDM5BQ9UGL1 1544 aa23.27■■□□□ 1.32
USE1-210ENST00000601662 ABCA8O94911 1581 aa23.26■■□□□ 1.31
USE1-210ENST00000601662 KIF13AQ9H1H9 1805 aa23.26■■□□□ 1.31
USE1-210ENST00000601662 ZCCHC11Q5TAX3 1644 aaKnown RBP23.22■■□□□ 1.31
USE1-210ENST00000601662 DIP2BQ9P265 1576 aa23.22■■□□□ 1.31
USE1-210ENST00000601662 EFCAB5A4FU69 1503 aa23.19■■□□□ 1.3
USE1-210ENST00000601662 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.19■■□□□ 1.3
USE1-210ENST00000601662 HNRNPUL2Q1KMD3 747 aaKnown RBP23.19■■□□□ 1.3
USE1-210ENST00000601662 KCNH8Q96L42 1107 aa23.17■■□□□ 1.3
USE1-210ENST00000601662 ATP1B4Q9UN42 357 aaPredicted RBP23.14■■□□□ 1.29
USE1-210ENST00000601662 RAPGEF6Q8TEU7 1601 aa23.14■■□□□ 1.29
USE1-210ENST00000601662 ATP10BO94823 1461 aa23.13■■□□□ 1.29
USE1-210ENST00000601662 ARHGAP35Q9NRY4 1499 aa23.13■■□□□ 1.29
USE1-210ENST00000601662 TSPOAP1O95153 1857 aa23.12■■□□□ 1.29
USE1-210ENST00000601662 WDR7Q9Y4E6 1490 aa23.11■■□□□ 1.29
USE1-210ENST00000601662 EPRSP07814 1512 aaKnown RBP23.11■■□□□ 1.29
USE1-210ENST00000601662 NUP153P49790 1475 aaKnown RBP23.07■■□□□ 1.28
USE1-210ENST00000601662 GLI2P10070 1586 aa23.06■■□□□ 1.28
USE1-210ENST00000601662 FMN1Q68DA7 1419 aa23.04■■□□□ 1.28
USE1-210ENST00000601662 CLIP1P30622 1438 aa23■■□□□ 1.27
USE1-210ENST00000601662 PLEKHD1A6NEE1 506 aa23■■□□□ 1.27
USE1-210ENST00000601662 CEP162Q5TB80 1403 aa22.99■■□□□ 1.27
USE1-210ENST00000601662 CD109Q6YHK3 1445 aa22.96■■□□□ 1.27
USE1-210ENST00000601662 MAP3K4Q9Y6R4 1608 aa22.95■■□□□ 1.26
USE1-210ENST00000601662 CDK13Q14004 1512 aaKnown RBP22.94■■□□□ 1.26
USE1-210ENST00000601662 PPRC1Q5VV67 1664 aaKnown RBP22.93■■□□□ 1.26
USE1-210ENST00000601662 KDM6BO15054 1643 aa22.91■■□□□ 1.26
USE1-210ENST00000601662 TEX14Q8IWB6 1497 aa22.9■■□□□ 1.26
USE1-210ENST00000601662 HECW1Q76N89 1606 aa22.9■■□□□ 1.26
USE1-210ENST00000601662 CFAP43Q8NDM7 1665 aa22.87■■□□□ 1.25
USE1-210ENST00000601662 CDK11AQ9UQ88 783 aaPredicted RBP22.86■■□□□ 1.25
USE1-210ENST00000601662 CASKIN1Q8WXD9 1431 aa22.85■■□□□ 1.25
USE1-210ENST00000601662 MAGI3Q5TCQ9 1506 aa22.84■■□□□ 1.25
USE1-210ENST00000601662 PCF11O94913 1555 aaKnown RBP22.83■■□□□ 1.25
USE1-210ENST00000601662 ABCA9Q8IUA7 1624 aa22.82■■□□□ 1.24
USE1-210ENST00000601662 COL17A1Q9UMD9 1497 aaPredicted RBP22.81■■□□□ 1.24
USE1-210ENST00000601662 LRRIQ1Q96JM4 1722 aa22.77■■□□□ 1.23
USE1-210ENST00000601662 FYCO1Q9BQS8 1478 aa22.76■■□□□ 1.23
USE1-210ENST00000601662 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.75■■□□□ 1.23
USE1-210ENST00000601662 CCDC18Q5T9S5 1454 aa22.74■■□□□ 1.23
USE1-210ENST00000601662 TROQ12816 1431 aaPredicted RBP22.74■■□□□ 1.23
USE1-210ENST00000601662 TTC37Q6PGP7 1564 aa22.71■■□□□ 1.23
USE1-210ENST00000601662 VPS8Q8N3P4 1428 aa22.69■■□□□ 1.22
USE1-210ENST00000601662 KIF14Q15058 1648 aa22.68■■□□□ 1.22
USE1-210ENST00000601662 PHLDB1Q86UU1 1377 aa22.67■■□□□ 1.22
USE1-210ENST00000601662 RAPGEF3O95398 923 aa22.67■■□□□ 1.22
USE1-210ENST00000601662 NEO1Q92859 1461 aa22.66■■□□□ 1.22
USE1-210ENST00000601662 ARAP3Q8WWN8 1544 aa22.65■■□□□ 1.22
USE1-210ENST00000601662 FANCAO15360 1455 aa22.65■■□□□ 1.22
USE1-210ENST00000601662 PLCH2O75038 1416 aa22.64■■□□□ 1.21
USE1-210ENST00000601662 AKNAQ7Z591 1439 aa22.63■■□□□ 1.21
USE1-210ENST00000601662 EFCAB2Q5VUJ9 269 aa22.62■■□□□ 1.21
USE1-210ENST00000601662 AEBP2Q6ZN18 517 aaPredicted RBP22.61■■□□□ 1.21
USE1-210ENST00000601662 MTUS2Q5JR59 1369 aa22.59■■□□□ 1.21
USE1-210ENST00000601662 APLP2Q06481 763 aa22.58■■□□□ 1.21
USE1-210ENST00000601662 MYO5CQ9NQX4 1742 aa22.57■■□□□ 1.2
USE1-210ENST00000601662 DENND4BO75064 1496 aaPredicted RBP22.56■■□□□ 1.2
USE1-210ENST00000601662 CFAP74Q9C0B2 1584 aa22.55■■□□□ 1.2
USE1-210ENST00000601662 ARHGAP5Q13017 1502 aa22.55■■□□□ 1.2
USE1-210ENST00000601662 SCAPERQ9BY12 1400 aa22.54■■□□□ 1.2
USE1-210ENST00000601662 ADGRL1O94910 1474 aa22.54■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms