RNA–Protein interactions for RNA: ENST00000600031.1

VRK3-218, Transcript of vaccinia related kinase 3, humanhuman

Gene VRK3, Length 2,110 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-218ENST00000600031 ARHGAP35Q9NRY4 1499 aa23.89■■□□□ 1.42
VRK3-218ENST00000600031 CHMP7Q8WUX9 453 aaPredicted RBP23.88■■□□□ 1.41
VRK3-218ENST00000600031 ARAP1Q96P48 1450 aa23.87■■□□□ 1.41
VRK3-218ENST00000600031 FBLN2P98095 1184 aa23.84■■□□□ 1.41
VRK3-218ENST00000600031 VPS8Q8N3P4 1428 aa23.83■■□□□ 1.4
VRK3-218ENST00000600031 HRCP23327 699 aa23.82■■□□□ 1.4
VRK3-218ENST00000600031 IQGAP2Q13576 1575 aa23.77■■□□□ 1.4
VRK3-218ENST00000600031 P3H3Q8IVL6 736 aa23.76■■□□□ 1.39
VRK3-218ENST00000600031 CEP170Q5SW79 1584 aa23.76■■□□□ 1.39
VRK3-218ENST00000600031 EFCAB5A4FU69 1503 aa23.75■■□□□ 1.39
VRK3-218ENST00000600031 KIAA0586Q9BVV6 1533 aa23.75■■□□□ 1.39
VRK3-218ENST00000600031 NUP160Q12769 1436 aa23.72■■□□□ 1.39
VRK3-218ENST00000600031 PPARGC1BQ86YN6 1023 aaKnown RBP23.72■■□□□ 1.39
VRK3-218ENST00000600031 SAMD9Q5K651 1589 aa23.71■■□□□ 1.39
VRK3-218ENST00000600031 FHOD3Q2V2M9 1422 aa23.7■■□□□ 1.38
VRK3-218ENST00000600031 CHD1O14646 1710 aa23.7■■□□□ 1.38
VRK3-218ENST00000600031 PCGF6Q9BYE7 350 aa23.66■■□□□ 1.38
VRK3-218ENST00000600031 UGGT2Q9NYU1 1516 aa23.66■■□□□ 1.38
VRK3-218ENST00000600031 DISP1Q96F81 1524 aa23.57■■□□□ 1.36
VRK3-218ENST00000600031 APLP2Q06481 763 aa23.57■■□□□ 1.36
VRK3-218ENST00000600031 JPH4Q96JJ6 628 aa23.57■■□□□ 1.36
VRK3-218ENST00000600031 FMN1Q68DA7 1419 aa23.55■■□□□ 1.36
VRK3-218ENST00000600031 TTBK1Q5TCY1 1321 aaPredicted RBP23.55■■□□□ 1.36
VRK3-218ENST00000600031 PCF11O94913 1555 aaKnown RBP23.54■■□□□ 1.36
VRK3-218ENST00000600031 KIAA0556O60303 1618 aa23.53■■□□□ 1.36
VRK3-218ENST00000600031 TRIM26Q12899 539 aaPredicted RBP23.53■■□□□ 1.36
VRK3-218ENST00000600031 CASKIN1Q8WXD9 1431 aa23.5■■□□□ 1.35
VRK3-218ENST00000600031 FYCO1Q9BQS8 1478 aa23.47■■□□□ 1.35
VRK3-218ENST00000600031 ATP1B4Q9UN42 357 aaPredicted RBP23.47■■□□□ 1.35
VRK3-218ENST00000600031 KANK4Q5T7N3 995 aaPredicted RBP23.45■■□□□ 1.34
VRK3-218ENST00000600031 CARMIL2Q6F5E8 1435 aa23.44■■□□□ 1.34
VRK3-218ENST00000600031 CLASP1Q7Z460 1538 aa23.42■■□□□ 1.34
VRK3-218ENST00000600031 PRG4Q92954 1404 aaPredicted RBP23.41■■□□□ 1.34
VRK3-218ENST00000600031 MAP3K1Q13233 1512 aa23.41■■□□□ 1.34
VRK3-218ENST00000600031 TIAM1Q13009 1591 aa23.41■■□□□ 1.34
VRK3-218ENST00000600031 SHROOM2Q13796 1616 aa23.41■■□□□ 1.34
VRK3-218ENST00000600031 CFAP43Q8NDM7 1665 aa23.36■■□□□ 1.33
VRK3-218ENST00000600031 LRRIQ1Q96JM4 1722 aa23.35■■□□□ 1.33
VRK3-218ENST00000600031 LRRC9Q6ZRR7 1453 aa23.32■■□□□ 1.32
VRK3-218ENST00000600031 HECW1Q76N89 1606 aa23.31■■□□□ 1.32
VRK3-218ENST00000600031 ERCC6L2Q5T890 1561 aa23.3■■□□□ 1.32
VRK3-218ENST00000600031 OSCARQ8IYS5 282 aa23.29■■□□□ 1.32
VRK3-218ENST00000600031 RAPGEF6Q8TEU7 1601 aa23.28■■□□□ 1.32
VRK3-218ENST00000600031 PLB1Q6P1J6 1458 aa23.28■■□□□ 1.32
VRK3-218ENST00000600031 EPRSP07814 1512 aaKnown RBP23.26■■□□□ 1.31
VRK3-218ENST00000600031 CCDC18Q5T9S5 1454 aa23.25■■□□□ 1.31
VRK3-218ENST00000600031 PTPRGP23470 1445 aa23.25■■□□□ 1.31
VRK3-218ENST00000600031 NUP153P49790 1475 aaKnown RBP23.25■■□□□ 1.31
VRK3-218ENST00000600031 ARID3CA6NKF2 412 aa23.24■■□□□ 1.31
VRK3-218ENST00000600031 CDK13Q14004 1512 aaKnown RBP23.23■■□□□ 1.31
VRK3-218ENST00000600031 ABCA8O94911 1581 aa23.21■■□□□ 1.31
VRK3-218ENST00000600031 MTUS2Q5JR59 1369 aa23.18■■□□□ 1.3
VRK3-218ENST00000600031 MAGI3Q5TCQ9 1506 aa23.17■■□□□ 1.3
VRK3-218ENST00000600031 EHBP1L1Q8N3D4 1523 aa23.13■■□□□ 1.29
VRK3-218ENST00000600031 PHLDB1Q86UU1 1377 aa23.12■■□□□ 1.29
VRK3-218ENST00000600031 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.11■■□□□ 1.29
VRK3-218ENST00000600031 HNRNPUL2Q1KMD3 747 aaKnown RBP23.11■■□□□ 1.29
VRK3-218ENST00000600031 UACAQ9BZF9 1416 aa23.11■■□□□ 1.29
VRK3-218ENST00000600031 RRBP1Q9P2E9 1410 aaKnown RBP23.09■■□□□ 1.29
VRK3-218ENST00000600031 ATP10BO94823 1461 aa23.08■■□□□ 1.29
VRK3-218ENST00000600031 SUPT6HQ7KZ85 1726 aaKnown RBP23.06■■□□□ 1.28
VRK3-218ENST00000600031 NCOA2Q15596 1464 aa23.05■■□□□ 1.28
VRK3-218ENST00000600031 CDK11AQ9UQ88 783 aaPredicted RBP23.05■■□□□ 1.28
VRK3-218ENST00000600031 ABCC2Q92887 1545 aa23.04■■□□□ 1.28
VRK3-218ENST00000600031 CCNB3Q8WWL7 1395 aa23.03■■□□□ 1.28
VRK3-218ENST00000600031 ARHGEF11O15085 1522 aa23.02■■□□□ 1.27
VRK3-218ENST00000600031 TROQ12816 1431 aaPredicted RBP22.99■■□□□ 1.27
VRK3-218ENST00000600031 ZEB1P37275 1124 aaPredicted RBP22.99■■□□□ 1.27
VRK3-218ENST00000600031 UHRF1BP1LA0JNW5 1464 aa22.98■■□□□ 1.27
VRK3-218ENST00000600031 PLEKHD1A6NEE1 506 aa22.96■■□□□ 1.27
VRK3-218ENST00000600031 MYOM3Q5VTT5 1437 aa22.94■■□□□ 1.26
VRK3-218ENST00000600031 FGD6Q6ZV73 1430 aa22.94■■□□□ 1.26
VRK3-218ENST00000600031 FAM50AQ14320 339 aaKnown RBP22.91■■□□□ 1.26
VRK3-218ENST00000600031 ADCY10Q96PN6 1610 aa22.91■■□□□ 1.26
VRK3-218ENST00000600031 KIF14Q15058 1648 aa22.9■■□□□ 1.26
VRK3-218ENST00000600031 KDM5BQ9UGL1 1544 aa22.9■■□□□ 1.26
VRK3-218ENST00000600031 ZCCHC11Q5TAX3 1644 aaKnown RBP22.88■■□□□ 1.25
VRK3-218ENST00000600031 ITGAEP38570 1179 aa22.87■■□□□ 1.25
VRK3-218ENST00000600031 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.86■■□□□ 1.25
VRK3-218ENST00000600031 PTPN23Q9H3S7 1636 aa22.83■■□□□ 1.25
VRK3-218ENST00000600031 MIA2Q96PC5 1412 aa22.82■■□□□ 1.24
VRK3-218ENST00000600031 ABCC10Q5T3U5 1492 aa22.81■■□□□ 1.24
VRK3-218ENST00000600031 GPATCH8Q9UKJ3 1502 aaKnown RBP22.8■■□□□ 1.24
VRK3-218ENST00000600031 TCOF1Q13428 1488 aaKnown RBP22.79■■□□□ 1.24
VRK3-218ENST00000600031 RIMBP3CA6NJZ7 1639 aa22.79■■□□□ 1.24
VRK3-218ENST00000600031 RIMBP3BA6NNM3 1639 aa22.79■■□□□ 1.24
VRK3-218ENST00000600031 RIMBP3Q9UFD9 1639 aa22.79■■□□□ 1.24
VRK3-218ENST00000600031 ITSN2Q9NZM3 1697 aa22.75■■□□□ 1.23
VRK3-218ENST00000600031 KCNH8Q96L42 1107 aa22.75■■□□□ 1.23
VRK3-218ENST00000600031 CDC42BPAQ5VT25 1732 aa22.74■■□□□ 1.23
VRK3-218ENST00000600031 CFDP1Q9UEE9 299 aaPredicted RBP22.74■■□□□ 1.23
VRK3-218ENST00000600031 ZNF644Q9H582 1327 aaPredicted RBP22.73■■□□□ 1.23
VRK3-218ENST00000600031 CYB5RLQ6IPT4 315 aa22.72■■□□□ 1.23
VRK3-218ENST00000600031 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.71■■□□□ 1.23
VRK3-218ENST00000600031 PTPRKQ15262 1439 aa22.71■■□□□ 1.23
VRK3-218ENST00000600031 NPM1P06748 294 aaKnown RBP eCLIP22.7■■□□□ 1.22
VRK3-218ENST00000600031 TTC37Q6PGP7 1564 aa22.7■■□□□ 1.22
VRK3-218ENST00000600031 WDR7Q9Y4E6 1490 aa22.69■■□□□ 1.22
VRK3-218ENST00000600031 ASXL2Q76L83 1435 aa22.67■■□□□ 1.22
VRK3-218ENST00000600031 ZNF777Q9ULD5 760 aaPredicted RBP22.67■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms