RNA–Protein interactions for RNA: ENST00000599227.5

ZNF544-213, Transcript of zinc finger protein 544, humanhuman

TSL 1 (best) BASIC

Gene ZNF544, Length 3,587 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF544-213ENST00000599227 RAB3GAP2Q9H2M9 1393 aa15.93■□□□□ 0.14
ZNF544-213ENST00000599227 MYT1LQ9UL68 1186 aa15.92■□□□□ 0.14
ZNF544-213ENST00000599227 CUX2O14529 1486 aa15.9■□□□□ 0.14
ZNF544-213ENST00000599227 IRX6P78412 446 aaPredicted RBP15.9■□□□□ 0.14
ZNF544-213ENST00000599227 NEFLP07196 543 aa15.87■□□□□ 0.13
ZNF544-213ENST00000599227 FOXD1Q16676 465 aa15.86■□□□□ 0.13
ZNF544-213ENST00000599227 PRXQ9BXM0 1461 aa15.83■□□□□ 0.13
ZNF544-213ENST00000599227 CLSPNQ9HAW4 1339 aa15.83■□□□□ 0.12
ZNF544-213ENST00000599227 CARMIL1Q5VZK9 1371 aa15.83■□□□□ 0.12
ZNF544-213ENST00000599227 CUX1P39880 1505 aa15.82■□□□□ 0.12
ZNF544-213ENST00000599227 ANP32CO43423 234 aa15.82■□□□□ 0.12
ZNF544-213ENST00000599227 TDRD9Q8NDG6 1382 aaKnown RBP15.81■□□□□ 0.12
ZNF544-213ENST00000599227 TOP2BQ02880 1626 aa15.81■□□□□ 0.12
ZNF544-213ENST00000599227 ARHGAP35Q9NRY4 1499 aa15.81■□□□□ 0.12
ZNF544-213ENST00000599227 SALL2Q9Y467 1007 aaPredicted RBP15.8■□□□□ 0.12
ZNF544-213ENST00000599227 TSHZ2Q9NRE2 1034 aa15.79■□□□□ 0.12
ZNF544-213ENST00000599227 IGF1RP08069 1367 aa15.78■□□□□ 0.12
ZNF544-213ENST00000599227 PHLDB1Q86UU1 1377 aa15.78■□□□□ 0.12
ZNF544-213ENST00000599227 PEG3Q9GZU2 1588 aa15.76■□□□□ 0.11
ZNF544-213ENST00000599227 FHOD3Q2V2M9 1422 aa15.75■□□□□ 0.11
ZNF544-213ENST00000599227 SETD5Q9C0A6 1442 aa15.75■□□□□ 0.11
ZNF544-213ENST00000599227 TONSLQ96HA7 1378 aa15.74■□□□□ 0.11
ZNF544-213ENST00000599227 RRBP1Q9P2E9 1410 aaKnown RBP15.73■□□□□ 0.11
ZNF544-213ENST00000599227 HNRNPUQ00839 825 aaKnown RBP eCLIP15.72■□□□□ 0.11
ZNF544-213ENST00000599227 KDM2AQ9Y2K7 1162 aa15.72■□□□□ 0.11
ZNF544-213ENST00000599227 FAM9BQ8IZU0 186 aa15.71■□□□□ 0.11
ZNF544-213ENST00000599227 MTUS2Q5JR59 1369 aa15.7■□□□□ 0.1
ZNF544-213ENST00000599227 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.67■□□□□ 0.1
ZNF544-213ENST00000599227 ERICH3Q5RHP9 1530 aa15.67■□□□□ 0.1
ZNF544-213ENST00000599227 PPP1R15AO75807 674 aaPredicted RBP15.67■□□□□ 0.1
ZNF544-213ENST00000599227 RAD54L2Q9Y4B4 1467 aa15.66■□□□□ 0.1
ZNF544-213ENST00000599227 WDR97A6NE52 1622 aa15.65■□□□□ 0.1
ZNF544-213ENST00000599227 FGD5Q6ZNL6 1462 aa15.64■□□□□ 0.09
ZNF544-213ENST00000599227 NCAPD3P42695 1498 aa15.64■□□□□ 0.09
ZNF544-213ENST00000599227 CADPSQ9ULU8 1353 aa15.63■□□□□ 0.09
ZNF544-213ENST00000599227 SLC4A1APQ9BWU0 796 aaKnown RBP15.62■□□□□ 0.09
ZNF544-213ENST00000599227 CFTRP13569 1480 aa15.62■□□□□ 0.09
ZNF544-213ENST00000599227 LRRC9Q6ZRR7 1453 aa15.61■□□□□ 0.09
ZNF544-213ENST00000599227 CHMP7Q8WUX9 453 aaPredicted RBP15.59■□□□□ 0.09
ZNF544-213ENST00000599227 BIVM-ERCC5R4GMW8 1640 aa15.59■□□□□ 0.09
ZNF544-213ENST00000599227 RGL3Q3MIN7 710 aa15.58■□□□□ 0.08
ZNF544-213ENST00000599227 MAPKBP1O60336 1514 aa15.57■□□□□ 0.08
ZNF544-213ENST00000599227 NESP48681 1621 aa15.56■□□□□ 0.08
ZNF544-213ENST00000599227 FHAD1B1AJZ9 1412 aa15.56■□□□□ 0.08
ZNF544-213ENST00000599227 ERICH6Q7L0X2 663 aa15.54■□□□□ 0.08
ZNF544-213ENST00000599227 RBM19Q9Y4C8 960 aaKnown RBP15.54■□□□□ 0.08
ZNF544-213ENST00000599227 TIAM1Q13009 1591 aa15.54■□□□□ 0.08
ZNF544-213ENST00000599227 ANP32EQ9BTT0 268 aa15.53■□□□□ 0.08
ZNF544-213ENST00000599227 HSPA5P11021 654 aaKnown RBP15.52■□□□□ 0.08
ZNF544-213ENST00000599227 FANCD2Q9BXW9 1451 aa15.5■□□□□ 0.07
ZNF544-213ENST00000599227 CCDC184Q52MB2 194 aa15.49■□□□□ 0.07
ZNF544-213ENST00000599227 BCL11AQ9H165 835 aa15.48■□□□□ 0.07
ZNF544-213ENST00000599227 MRS2Q9HD23 443 aa15.47■□□□□ 0.07
ZNF544-213ENST00000599227 ZNF644Q9H582 1327 aaPredicted RBP15.46■□□□□ 0.07
ZNF544-213ENST00000599227 HMGXB3Q12766 1538 aa15.46■□□□□ 0.07
ZNF544-213ENST00000599227 PCF11O94913 1555 aaKnown RBP15.46■□□□□ 0.07
ZNF544-213ENST00000599227 EIF4G2P78344 907 aaKnown RBP eCLIP15.45■□□□□ 0.06
ZNF544-213ENST00000599227 PLPPR3Q6T4P5 718 aa15.44■□□□□ 0.06
ZNF544-213ENST00000599227 CDK11AQ9UQ88 783 aaPredicted RBP15.44■□□□□ 0.06
ZNF544-213ENST00000599227 CCER2I3L3R5 266 aa15.44■□□□□ 0.06
ZNF544-213ENST00000599227 CCDC18Q5T9S5 1454 aa15.44■□□□□ 0.06
ZNF544-213ENST00000599227 B4GALNT3Q6L9W6 998 aa15.44■□□□□ 0.06
ZNF544-213ENST00000599227 L3MBTL2Q969R5 705 aa15.44■□□□□ 0.06
ZNF544-213ENST00000599227 FGD6Q6ZV73 1430 aa15.43■□□□□ 0.06
ZNF544-213ENST00000599227 PTPRKQ15262 1439 aa15.42■□□□□ 0.06
ZNF544-213ENST00000599227 CHGAP10645 457 aaKnown RBP15.4■□□□□ 0.06
ZNF544-213ENST00000599227 CFDP1Q9UEE9 299 aaPredicted RBP15.4■□□□□ 0.06
ZNF544-213ENST00000599227 TIMELESSQ9UNS1 1208 aa15.4■□□□□ 0.06
ZNF544-213ENST00000599227 WASHC2AQ641Q2 1341 aa15.4■□□□□ 0.06
ZNF544-213ENST00000599227 MPHOSPH9Q99550 1183 aa15.39■□□□□ 0.05
ZNF544-213ENST00000599227 C11orf95C9JLR9 678 aaPredicted RBP15.37■□□□□ 0.05
ZNF544-213ENST00000599227 POLA1P09884 1462 aaPredicted RBP15.37■□□□□ 0.05
ZNF544-213ENST00000599227 AQRO60306 1485 aaKnown RBP eCLIP15.36■□□□□ 0.056e-7■■■■■ 28.9
ZNF544-213ENST00000599227 PDS5BQ9NTI5 1447 aa15.36■□□□□ 0.05
ZNF544-213ENST00000599227 FMN1Q68DA7 1419 aa15.36■□□□□ 0.05
ZNF544-213ENST00000599227 CASKIN1Q8WXD9 1431 aa15.34■□□□□ 0.05
ZNF544-213ENST00000599227 NCOA2Q15596 1464 aa15.32■□□□□ 0.04
ZNF544-213ENST00000599227 TOPBP1Q92547 1522 aa15.31■□□□□ 0.04
ZNF544-213ENST00000599227 SLC24A1O60721 1099 aa15.31■□□□□ 0.04
ZNF544-213ENST00000599227 NPM2Q86SE8 214 aaKnown RBP15.31■□□□□ 0.04
ZNF544-213ENST00000599227 UACAQ9BZF9 1416 aa15.3■□□□□ 0.04
ZNF544-213ENST00000599227 CC2D2AQ9P2K1 1620 aa15.3■□□□□ 0.04
ZNF544-213ENST00000599227 NBPF8Q3BBV2 869 aa15.3■□□□□ 0.04
ZNF544-213ENST00000599227 NAIPQ13075 1403 aa15.3■□□□□ 0.04
ZNF544-213ENST00000599227 FYCO1Q9BQS8 1478 aa15.28■□□□□ 0.04
ZNF544-213ENST00000599227 TSPY4P0CV99 314 aa15.28■□□□□ 0.04
ZNF544-213ENST00000599227 TSPY10P0CW01 314 aa15.28■□□□□ 0.04
ZNF544-213ENST00000599227 HNRNPMP52272 730 aaKnown RBP eCLIP15.28■□□□□ 0.04
ZNF544-213ENST00000599227 MYOM3Q5VTT5 1437 aa15.28■□□□□ 0.04
ZNF544-213ENST00000599227 MSH5O43196 834 aa15.28■□□□□ 0.04
ZNF544-213ENST00000599227 NBR1Q14596 966 aa15.27■□□□□ 0.04
ZNF544-213ENST00000599227 PRKRIP1Q9H875 184 aaPredicted RBP15.26■□□□□ 0.03
ZNF544-213ENST00000599227 PLEKHD1A6NEE1 506 aa15.26■□□□□ 0.03
ZNF544-213ENST00000599227 DCAF11Q8TEB1 546 aa15.25■□□□□ 0.03
ZNF544-213ENST00000599227 HFM1A2PYH4 1435 aa15.25■□□□□ 0.03
ZNF544-213ENST00000599227 GAPVD1Q14C86 1478 aa15.25■□□□□ 0.03
ZNF544-213ENST00000599227 PKD2Q13563 968 aa15.25■□□□□ 0.03
ZNF544-213ENST00000599227 TMC1Q8TDI8 760 aa15.24■□□□□ 0.03
ZNF544-213ENST00000599227 MAP3K1Q13233 1512 aa15.23■□□□□ 0.03
ZNF544-213ENST00000599227 ERCC6Q03468 1493 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms