RNA–Protein interactions for RNA: ENST00000598422.1

XRCC1-208, Transcript of X-ray repair cross complementing 1, humanhuman

TSL 2

Gene XRCC1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1-208ENST00000598422 JPH4Q96JJ6 628 aa24.94■■□□□ 1.58
XRCC1-208ENST00000598422 PRG4Q92954 1404 aaPredicted RBP24.94■■□□□ 1.58
XRCC1-208ENST00000598422 TRHP20396 242 aaPredicted RBP24.92■■□□□ 1.58
XRCC1-208ENST00000598422 KIAA0586Q9BVV6 1533 aa24.88■■□□□ 1.57
XRCC1-208ENST00000598422 RAPGEF2Q9Y4G8 1499 aa24.77■■□□□ 1.56
XRCC1-208ENST00000598422 IQGAP2Q13576 1575 aa24.69■■□□□ 1.54
XRCC1-208ENST00000598422 CARMIL2Q6F5E8 1435 aa24.68■■□□□ 1.54
XRCC1-208ENST00000598422 NPM1P06748 294 aaKnown RBP eCLIP24.63■■□□□ 1.53
XRCC1-208ENST00000598422 TTBK1Q5TCY1 1321 aaPredicted RBP24.61■■□□□ 1.53
XRCC1-208ENST00000598422 PTPRGP23470 1445 aa24.61■■□□□ 1.53
XRCC1-208ENST00000598422 TNIKQ9UKE5 1360 aa24.6■■□□□ 1.53
XRCC1-208ENST00000598422 PRXQ9BXM0 1461 aa24.58■■□□□ 1.53
XRCC1-208ENST00000598422 UGGT2Q9NYU1 1516 aa24.54■■□□□ 1.52
XRCC1-208ENST00000598422 DISP1Q96F81 1524 aa24.52■■□□□ 1.52
XRCC1-208ENST00000598422 CSRNP3Q8WYN3 585 aa24.52■■□□□ 1.52
XRCC1-208ENST00000598422 ADCY10Q96PN6 1610 aa24.52■■□□□ 1.52
XRCC1-208ENST00000598422 EEA1Q15075 1411 aa24.52■■□□□ 1.52
XRCC1-208ENST00000598422 MAPKBP1O60336 1514 aa24.46■■□□□ 1.51
XRCC1-208ENST00000598422 KIAA0556O60303 1618 aa24.45■■□□□ 1.5
XRCC1-208ENST00000598422 GOLGA3Q08378 1498 aa24.44■■□□□ 1.5
XRCC1-208ENST00000598422 CTTNBP2Q8WZ74 1663 aa24.43■■□□□ 1.5
XRCC1-208ENST00000598422 UACAQ9BZF9 1416 aa24.43■■□□□ 1.5
XRCC1-208ENST00000598422 FAM9AQ8IZU1 332 aaPredicted RBP24.42■■□□□ 1.5
XRCC1-208ENST00000598422 ABCC2Q92887 1545 aa24.41■■□□□ 1.5
XRCC1-208ENST00000598422 FAM69CQ0P6D2 419 aa24.41■■□□□ 1.5
XRCC1-208ENST00000598422 ABCC10Q5T3U5 1492 aa24.4■■□□□ 1.5
XRCC1-208ENST00000598422 UHRF1BP1LA0JNW5 1464 aa24.38■■□□□ 1.49
XRCC1-208ENST00000598422 CHIC1Q5VXU3 224 aa24.38■■□□□ 1.49
XRCC1-208ENST00000598422 DIP2BQ9P265 1576 aa24.32■■□□□ 1.48
XRCC1-208ENST00000598422 ASXL2Q76L83 1435 aa24.29■■□□□ 1.48
XRCC1-208ENST00000598422 PLB1Q6P1J6 1458 aa24.29■■□□□ 1.48
XRCC1-208ENST00000598422 KIF13AQ9H1H9 1805 aa24.28■■□□□ 1.48
XRCC1-208ENST00000598422 KDM5BQ9UGL1 1544 aa24.27■■□□□ 1.48
XRCC1-208ENST00000598422 P3H3Q8IVL6 736 aa24.25■■□□□ 1.47
XRCC1-208ENST00000598422 KIF21BO75037 1637 aa24.21■■□□□ 1.47
XRCC1-208ENST00000598422 RANGAP1P46060 587 aaPredicted RBP24.21■■□□□ 1.47
XRCC1-208ENST00000598422 ABCA8O94911 1581 aa24.19■■□□□ 1.46
XRCC1-208ENST00000598422 ZCCHC11Q5TAX3 1644 aaKnown RBP24.17■■□□□ 1.46
XRCC1-208ENST00000598422 SAMD9Q5K651 1589 aa24.16■■□□□ 1.46
XRCC1-208ENST00000598422 EHMT2Q96KQ7 1210 aa24.15■■□□□ 1.46
XRCC1-208ENST00000598422 UBTFP17480 764 aaKnown RBP24.13■■□□□ 1.45
XRCC1-208ENST00000598422 WDR7Q9Y4E6 1490 aa24.13■■□□□ 1.45
XRCC1-208ENST00000598422 GLI2P10070 1586 aa24.12■■□□□ 1.45
XRCC1-208ENST00000598422 EPRSP07814 1512 aaKnown RBP24.12■■□□□ 1.45
XRCC1-208ENST00000598422 ARID3CA6NKF2 412 aa24.1■■□□□ 1.45
XRCC1-208ENST00000598422 FHOD3Q2V2M9 1422 aa24.09■■□□□ 1.45
XRCC1-208ENST00000598422 EFCAB5A4FU69 1503 aa24.06■■□□□ 1.44
XRCC1-208ENST00000598422 KDM6BO15054 1643 aa24.04■■□□□ 1.44
XRCC1-208ENST00000598422 TSPOAP1O95153 1857 aa24.03■■□□□ 1.44
XRCC1-208ENST00000598422 KCNH8Q96L42 1107 aa24.02■■□□□ 1.44
XRCC1-208ENST00000598422 ATP10BO94823 1461 aa24■■□□□ 1.43
XRCC1-208ENST00000598422 TEX14Q8IWB6 1497 aa24■■□□□ 1.43
XRCC1-208ENST00000598422 RAPGEF6Q8TEU7 1601 aa24■■□□□ 1.43
XRCC1-208ENST00000598422 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24■■□□□ 1.43
XRCC1-208ENST00000598422 HNRNPUL2Q1KMD3 747 aaKnown RBP24■■□□□ 1.43
XRCC1-208ENST00000598422 MAP3K4Q9Y6R4 1608 aa23.98■■□□□ 1.43
XRCC1-208ENST00000598422 NUP153P49790 1475 aaKnown RBP23.94■■□□□ 1.42
XRCC1-208ENST00000598422 CD109Q6YHK3 1445 aa23.94■■□□□ 1.42
XRCC1-208ENST00000598422 PPRC1Q5VV67 1664 aaKnown RBP23.93■■□□□ 1.42
XRCC1-208ENST00000598422 AEBP2Q6ZN18 517 aaPredicted RBP23.91■■□□□ 1.42
XRCC1-208ENST00000598422 MAGI3Q5TCQ9 1506 aa23.88■■□□□ 1.41
XRCC1-208ENST00000598422 ARHGAP35Q9NRY4 1499 aa23.87■■□□□ 1.41
XRCC1-208ENST00000598422 FMN1Q68DA7 1419 aa23.87■■□□□ 1.41
XRCC1-208ENST00000598422 CFAP43Q8NDM7 1665 aa23.86■■□□□ 1.41
XRCC1-208ENST00000598422 PLEKHD1A6NEE1 506 aa23.83■■□□□ 1.41
XRCC1-208ENST00000598422 ATP1B4Q9UN42 357 aaPredicted RBP23.82■■□□□ 1.4
XRCC1-208ENST00000598422 COL17A1Q9UMD9 1497 aaPredicted RBP23.81■■□□□ 1.4
XRCC1-208ENST00000598422 ABCA9Q8IUA7 1624 aa23.77■■□□□ 1.4
XRCC1-208ENST00000598422 CDK13Q14004 1512 aaKnown RBP23.75■■□□□ 1.39
XRCC1-208ENST00000598422 HECW1Q76N89 1606 aa23.75■■□□□ 1.39
XRCC1-208ENST00000598422 PHLDB1Q86UU1 1377 aa23.7■■□□□ 1.38
XRCC1-208ENST00000598422 CDK11AQ9UQ88 783 aaPredicted RBP23.7■■□□□ 1.38
XRCC1-208ENST00000598422 CLIP1P30622 1438 aa23.69■■□□□ 1.38
XRCC1-208ENST00000598422 NEO1Q92859 1461 aa23.68■■□□□ 1.38
XRCC1-208ENST00000598422 ARAP3Q8WWN8 1544 aa23.66■■□□□ 1.38
XRCC1-208ENST00000598422 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.63■■□□□ 1.37
XRCC1-208ENST00000598422 CASKIN1Q8WXD9 1431 aa23.62■■□□□ 1.37
XRCC1-208ENST00000598422 KDM4FA0A1W2PPD8 638 aa23.61■■□□□ 1.37
XRCC1-208ENST00000598422 PCF11O94913 1555 aaKnown RBP23.6■■□□□ 1.37
XRCC1-208ENST00000598422 TTC37Q6PGP7 1564 aa23.6■■□□□ 1.37
XRCC1-208ENST00000598422 FANCAO15360 1455 aa23.59■■□□□ 1.37
XRCC1-208ENST00000598422 CCDC18Q5T9S5 1454 aa23.59■■□□□ 1.37
XRCC1-208ENST00000598422 TROQ12816 1431 aaPredicted RBP23.59■■□□□ 1.37
XRCC1-208ENST00000598422 RAPGEF3O95398 923 aa23.58■■□□□ 1.37
XRCC1-208ENST00000598422 ADGRL1O94910 1474 aa23.56■■□□□ 1.36
XRCC1-208ENST00000598422 FYCO1Q9BQS8 1478 aa23.56■■□□□ 1.36
XRCC1-208ENST00000598422 AKNAQ7Z591 1439 aa23.55■■□□□ 1.36
XRCC1-208ENST00000598422 CFAP74Q9C0B2 1584 aa23.55■■□□□ 1.36
XRCC1-208ENST00000598422 KIF14Q15058 1648 aa23.55■■□□□ 1.36
XRCC1-208ENST00000598422 DENND4BO75064 1496 aaPredicted RBP23.53■■□□□ 1.36
XRCC1-208ENST00000598422 PLCH2O75038 1416 aa23.52■■□□□ 1.36
XRCC1-208ENST00000598422 CEP162Q5TB80 1403 aa23.5■■□□□ 1.35
XRCC1-208ENST00000598422 EFCAB2Q5VUJ9 269 aa23.47■■□□□ 1.35
XRCC1-208ENST00000598422 FRMPD1Q5SYB0 1578 aa23.46■■□□□ 1.35
XRCC1-208ENST00000598422 LRRIQ1Q96JM4 1722 aa23.44■■□□□ 1.34
XRCC1-208ENST00000598422 ARHGAP5Q13017 1502 aa23.43■■□□□ 1.34
XRCC1-208ENST00000598422 SCAPERQ9BY12 1400 aa23.42■■□□□ 1.34
XRCC1-208ENST00000598422 MYO5CQ9NQX4 1742 aa23.41■■□□□ 1.34
XRCC1-208ENST00000598422 POGZQ7Z3K3 1410 aa23.4■■□□□ 1.34
XRCC1-208ENST00000598422 ARHGEF40Q8TER5 1519 aa23.38■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms