RNA–Protein interactions for RNA: ENST00000596436.5

USHBP1-206, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 3

Gene USHBP1, Length 487 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-206ENST00000596436 CUL7Q14999 1698 aa27.95■■■□□ 2.07
USHBP1-206ENST00000596436 IGF1RP08069 1367 aa27.95■■■□□ 2.06
USHBP1-206ENST00000596436 KIAA0586Q9BVV6 1533 aa27.94■■■□□ 2.06
USHBP1-206ENST00000596436 MAPKBP1O60336 1514 aa27.92■■■□□ 2.06
USHBP1-206ENST00000596436 KIF27Q86VH2 1401 aa27.92■■■□□ 2.06
USHBP1-206ENST00000596436 ADCY10Q96PN6 1610 aa27.9■■■□□ 2.06
USHBP1-206ENST00000596436 AEBP2Q6ZN18 517 aaPredicted RBP27.89■■■□□ 2.06
USHBP1-206ENST00000596436 ABCC10Q5T3U5 1492 aa27.89■■■□□ 2.05
USHBP1-206ENST00000596436 DIP2BQ9P265 1576 aa27.83■■■□□ 2.05
USHBP1-206ENST00000596436 NPM1P06748 294 aaKnown RBP eCLIP27.76■■■□□ 2.03
USHBP1-206ENST00000596436 FAM69CQ0P6D2 419 aa27.74■■■□□ 2.03
USHBP1-206ENST00000596436 CARMIL1Q5VZK9 1371 aa27.73■■■□□ 2.03
USHBP1-206ENST00000596436 PTPRGP23470 1445 aa27.65■■■□□ 2.02
USHBP1-206ENST00000596436 IQGAP2Q13576 1575 aa27.65■■■□□ 2.02
USHBP1-206ENST00000596436 TNIKQ9UKE5 1360 aa27.61■■■□□ 2.01
USHBP1-206ENST00000596436 CARMIL2Q6F5E8 1435 aa27.61■■■□□ 2.01
USHBP1-206ENST00000596436 ABCC2Q92887 1545 aa27.59■■■□□ 2.01
USHBP1-206ENST00000596436 KDM6BO15054 1643 aa27.59■■■□□ 2.01
USHBP1-206ENST00000596436 UHRF1BP1LA0JNW5 1464 aa27.57■■■□□ 2
USHBP1-206ENST00000596436 DISP1Q96F81 1524 aa27.55■■■□□ 2
USHBP1-206ENST00000596436 TSPOAP1O95153 1857 aa27.53■■■□□ 2
USHBP1-206ENST00000596436 GLI2P10070 1586 aa27.51■■□□□ 1.99
USHBP1-206ENST00000596436 UGGT2Q9NYU1 1516 aa27.5■■□□□ 1.99
USHBP1-206ENST00000596436 PLB1Q6P1J6 1458 aa27.49■■□□□ 1.99
USHBP1-206ENST00000596436 RAPGEF2Q9Y4G8 1499 aa27.48■■□□□ 1.99
USHBP1-206ENST00000596436 ASXL2Q76L83 1435 aa27.48■■□□□ 1.99
USHBP1-206ENST00000596436 PPRC1Q5VV67 1664 aaKnown RBP27.47■■□□□ 1.99
USHBP1-206ENST00000596436 UACAQ9BZF9 1416 aa27.47■■□□□ 1.99
USHBP1-206ENST00000596436 KDM5BQ9UGL1 1544 aa27.43■■□□□ 1.98
USHBP1-206ENST00000596436 KIAA0556O60303 1618 aa27.41■■□□□ 1.98
USHBP1-206ENST00000596436 TTBK1Q5TCY1 1321 aaPredicted RBP27.4■■□□□ 1.98
USHBP1-206ENST00000596436 KDM4FA0A1W2PPD8 638 aa27.37■■□□□ 1.97
USHBP1-206ENST00000596436 MAP3K4Q9Y6R4 1608 aa27.35■■□□□ 1.97
USHBP1-206ENST00000596436 EPRSP07814 1512 aaKnown RBP27.35■■□□□ 1.97
USHBP1-206ENST00000596436 ZCCHC11Q5TAX3 1644 aaKnown RBP27.34■■□□□ 1.97
USHBP1-206ENST00000596436 CTTNBP2Q8WZ74 1663 aa27.31■■□□□ 1.96
USHBP1-206ENST00000596436 COL17A1Q9UMD9 1497 aaPredicted RBP27.25■■□□□ 1.95
USHBP1-206ENST00000596436 TEX14Q8IWB6 1497 aa27.22■■□□□ 1.95
USHBP1-206ENST00000596436 PRXQ9BXM0 1461 aa27.21■■□□□ 1.95
USHBP1-206ENST00000596436 WDR7Q9Y4E6 1490 aa27.2■■□□□ 1.95
USHBP1-206ENST00000596436 GOLGA3Q08378 1498 aa27.19■■□□□ 1.94
USHBP1-206ENST00000596436 ABCA8O94911 1581 aa27.19■■□□□ 1.94
USHBP1-206ENST00000596436 ADGRL1O94910 1474 aa27.13■■□□□ 1.93
USHBP1-206ENST00000596436 CFAP43Q8NDM7 1665 aa27.1■■□□□ 1.93
USHBP1-206ENST00000596436 MAGI3Q5TCQ9 1506 aa27.09■■□□□ 1.93
USHBP1-206ENST00000596436 CD109Q6YHK3 1445 aa27.01■■□□□ 1.91
USHBP1-206ENST00000596436 SAMD9Q5K651 1589 aa26.95■■□□□ 1.9
USHBP1-206ENST00000596436 ATP10BO94823 1461 aa26.92■■□□□ 1.9
USHBP1-206ENST00000596436 KCNH8Q96L42 1107 aa26.91■■□□□ 1.9
USHBP1-206ENST00000596436 ARAP3Q8WWN8 1544 aa26.89■■□□□ 1.89
USHBP1-206ENST00000596436 ABCA9Q8IUA7 1624 aa26.87■■□□□ 1.89
USHBP1-206ENST00000596436 CSRNP3Q8WYN3 585 aa26.84■■□□□ 1.89
USHBP1-206ENST00000596436 HECW2Q9P2P5 1572 aa26.83■■□□□ 1.89
USHBP1-206ENST00000596436 RAPGEF6Q8TEU7 1601 aa26.83■■□□□ 1.88
USHBP1-206ENST00000596436 P3H3Q8IVL6 736 aa26.8■■□□□ 1.88
USHBP1-206ENST00000596436 PHLDB1Q86UU1 1377 aa26.79■■□□□ 1.88
USHBP1-206ENST00000596436 KIF21BO75037 1637 aa26.79■■□□□ 1.88
USHBP1-206ENST00000596436 FAM9AQ8IZU1 332 aaPredicted RBP26.78■■□□□ 1.88
USHBP1-206ENST00000596436 EEA1Q15075 1411 aa26.77■■□□□ 1.88
USHBP1-206ENST00000596436 CHIC1Q5VXU3 224 aa26.77■■□□□ 1.88
USHBP1-206ENST00000596436 NUP153P49790 1475 aaKnown RBP26.74■■□□□ 1.87
USHBP1-206ENST00000596436 ARID3CA6NKF2 412 aa26.73■■□□□ 1.87
USHBP1-206ENST00000596436 NEO1Q92859 1461 aa26.73■■□□□ 1.87
USHBP1-206ENST00000596436 FRMPD1Q5SYB0 1578 aa26.67■■□□□ 1.86
USHBP1-206ENST00000596436 ILDR1Q86SU0 546 aaPredicted RBP26.66■■□□□ 1.86
USHBP1-206ENST00000596436 FHOD3Q2V2M9 1422 aa26.65■■□□□ 1.86
USHBP1-206ENST00000596436 ADAMTSL3P82987 1691 aa26.64■■□□□ 1.86
USHBP1-206ENST00000596436 EFCAB5A4FU69 1503 aa26.61■■□□□ 1.85
USHBP1-206ENST00000596436 RAPGEF3O95398 923 aa26.58■■□□□ 1.85
USHBP1-206ENST00000596436 PTPRMP28827 1452 aa26.55■■□□□ 1.84
USHBP1-206ENST00000596436 BCORL1Q5H9F3 1711 aa26.55■■□□□ 1.84
USHBP1-206ENST00000596436 RICTORQ6R327 1708 aa26.54■■□□□ 1.84
USHBP1-206ENST00000596436 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.54■■□□□ 1.84
USHBP1-206ENST00000596436 HNRNPUL2Q1KMD3 747 aaKnown RBP26.54■■□□□ 1.84
USHBP1-206ENST00000596436 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.53■■□□□ 1.84
USHBP1-206ENST00000596436 ARHGEF40Q8TER5 1519 aa26.52■■□□□ 1.84
USHBP1-206ENST00000596436 CFAP74Q9C0B2 1584 aa26.51■■□□□ 1.83
USHBP1-206ENST00000596436 PLEKHD1A6NEE1 506 aa26.5■■□□□ 1.83
USHBP1-206ENST00000596436 TTC37Q6PGP7 1564 aa26.49■■□□□ 1.83
USHBP1-206ENST00000596436 DENND4BO75064 1496 aaPredicted RBP26.49■■□□□ 1.83
USHBP1-206ENST00000596436 FANCAO15360 1455 aa26.48■■□□□ 1.83
USHBP1-206ENST00000596436 AKNAQ7Z591 1439 aa26.48■■□□□ 1.83
USHBP1-206ENST00000596436 MADDQ8WXG6 1647 aa26.47■■□□□ 1.83
USHBP1-206ENST00000596436 ZMYM4Q5VZL5 1548 aa26.46■■□□□ 1.83
USHBP1-206ENST00000596436 RANGAP1P46060 587 aaPredicted RBP26.46■■□□□ 1.83
USHBP1-206ENST00000596436 CDK13Q14004 1512 aaKnown RBP26.42■■□□□ 1.82
USHBP1-206ENST00000596436 PCF11O94913 1555 aaKnown RBP26.37■■□□□ 1.81
USHBP1-206ENST00000596436 SIGLEC1Q9BZZ2 1709 aa26.36■■□□□ 1.81
USHBP1-206ENST00000596436 MAGI2Q86UL8 1455 aa26.36■■□□□ 1.81
USHBP1-206ENST00000596436 LMTK3Q96Q04 1460 aa26.35■■□□□ 1.81
USHBP1-206ENST00000596436 ZFYVE16Q7Z3T8 1539 aa26.34■■□□□ 1.81
USHBP1-206ENST00000596436 PLCH2O75038 1416 aa26.34■■□□□ 1.81
USHBP1-206ENST00000596436 RIMS1Q86UR5 1692 aaKnown RBP26.34■■□□□ 1.81
USHBP1-206ENST00000596436 HECW1Q76N89 1606 aa26.33■■□□□ 1.81
USHBP1-206ENST00000596436 ARID4BQ4LE39 1312 aaPredicted RBP26.33■■□□□ 1.81
USHBP1-206ENST00000596436 FMN1Q68DA7 1419 aa26.32■■□□□ 1.8
USHBP1-206ENST00000596436 YEATS2Q9ULM3 1422 aa26.32■■□□□ 1.8
USHBP1-206ENST00000596436 ARHGAP35Q9NRY4 1499 aa26.32■■□□□ 1.8
USHBP1-206ENST00000596436 POGZQ7Z3K3 1410 aa26.31■■□□□ 1.8
USHBP1-206ENST00000596436 MYO5CQ9NQX4 1742 aa26.27■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms