RNA–Protein interactions for RNA: ENST00000594724.5

USE1-205, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 3

Gene USE1, Length 744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-205ENST00000594724 SHROOM2Q13796 1616 aa25.15■■□□□ 1.62
USE1-205ENST00000594724 PRG4Q92954 1404 aaPredicted RBP25.11■■□□□ 1.61
USE1-205ENST00000594724 KIAA0586Q9BVV6 1533 aa25.07■■□□□ 1.6
USE1-205ENST00000594724 TRHP20396 242 aaPredicted RBP25.03■■□□□ 1.6
USE1-205ENST00000594724 RAPGEF2Q9Y4G8 1499 aa24.98■■□□□ 1.59
USE1-205ENST00000594724 IQGAP2Q13576 1575 aa24.87■■□□□ 1.57
USE1-205ENST00000594724 TTBK1Q5TCY1 1321 aaPredicted RBP24.84■■□□□ 1.57
USE1-205ENST00000594724 PRXQ9BXM0 1461 aa24.83■■□□□ 1.56
USE1-205ENST00000594724 CARMIL2Q6F5E8 1435 aa24.81■■□□□ 1.56
USE1-205ENST00000594724 CSRNP3Q8WYN3 585 aa24.81■■□□□ 1.56
USE1-205ENST00000594724 CHIC1Q5VXU3 224 aa24.78■■□□□ 1.56
USE1-205ENST00000594724 PTPRGP23470 1445 aa24.78■■□□□ 1.56
USE1-205ENST00000594724 FAM9AQ8IZU1 332 aaPredicted RBP24.76■■□□□ 1.55
USE1-205ENST00000594724 TNIKQ9UKE5 1360 aa24.76■■□□□ 1.55
USE1-205ENST00000594724 NPM1P06748 294 aaKnown RBP eCLIP24.74■■□□□ 1.55
USE1-205ENST00000594724 DISP1Q96F81 1524 aa24.74■■□□□ 1.55
USE1-205ENST00000594724 UGGT2Q9NYU1 1516 aa24.73■■□□□ 1.55
USE1-205ENST00000594724 ADCY10Q96PN6 1610 aa24.72■■□□□ 1.55
USE1-205ENST00000594724 EEA1Q15075 1411 aa24.69■■□□□ 1.54
USE1-205ENST00000594724 CTTNBP2Q8WZ74 1663 aa24.69■■□□□ 1.54
USE1-205ENST00000594724 KIAA0556O60303 1618 aa24.63■■□□□ 1.53
USE1-205ENST00000594724 UACAQ9BZF9 1416 aa24.59■■□□□ 1.53
USE1-205ENST00000594724 MAPKBP1O60336 1514 aa24.57■■□□□ 1.52
USE1-205ENST00000594724 GOLGA3Q08378 1498 aa24.57■■□□□ 1.52
USE1-205ENST00000594724 FAM69CQ0P6D2 419 aa24.56■■□□□ 1.52
USE1-205ENST00000594724 ABCC2Q92887 1545 aa24.55■■□□□ 1.52
USE1-205ENST00000594724 UHRF1BP1LA0JNW5 1464 aa24.54■■□□□ 1.52
USE1-205ENST00000594724 ABCC10Q5T3U5 1492 aa24.53■■□□□ 1.52
USE1-205ENST00000594724 P3H3Q8IVL6 736 aa24.53■■□□□ 1.52
USE1-205ENST00000594724 KIF13AQ9H1H9 1805 aa24.53■■□□□ 1.52
USE1-205ENST00000594724 EHMT2Q96KQ7 1210 aa24.5■■□□□ 1.51
USE1-205ENST00000594724 RANGAP1P46060 587 aaPredicted RBP24.49■■□□□ 1.51
USE1-205ENST00000594724 PLB1Q6P1J6 1458 aa24.47■■□□□ 1.51
USE1-205ENST00000594724 DIP2BQ9P265 1576 aa24.46■■□□□ 1.51
USE1-205ENST00000594724 KIF21BO75037 1637 aa24.46■■□□□ 1.51
USE1-205ENST00000594724 ASXL2Q76L83 1435 aa24.44■■□□□ 1.5
USE1-205ENST00000594724 KDM5BQ9UGL1 1544 aa24.44■■□□□ 1.5
USE1-205ENST00000594724 ABCA8O94911 1581 aa24.39■■□□□ 1.5
USE1-205ENST00000594724 ZCCHC11Q5TAX3 1644 aaKnown RBP24.39■■□□□ 1.49
USE1-205ENST00000594724 UBTFP17480 764 aaKnown RBP24.38■■□□□ 1.49
USE1-205ENST00000594724 SAMD9Q5K651 1589 aa24.37■■□□□ 1.49
USE1-205ENST00000594724 ARID3CA6NKF2 412 aa24.33■■□□□ 1.49
USE1-205ENST00000594724 FHOD3Q2V2M9 1422 aa24.3■■□□□ 1.48
USE1-205ENST00000594724 TSPOAP1O95153 1857 aa24.3■■□□□ 1.48
USE1-205ENST00000594724 EPRSP07814 1512 aaKnown RBP24.29■■□□□ 1.48
USE1-205ENST00000594724 GLI2P10070 1586 aa24.27■■□□□ 1.48
USE1-205ENST00000594724 WDR7Q9Y4E6 1490 aa24.26■■□□□ 1.47
USE1-205ENST00000594724 KCNH8Q96L42 1107 aa24.25■■□□□ 1.47
USE1-205ENST00000594724 ATP10BO94823 1461 aa24.23■■□□□ 1.47
USE1-205ENST00000594724 RAPGEF6Q8TEU7 1601 aa24.21■■□□□ 1.47
USE1-205ENST00000594724 EFCAB5A4FU69 1503 aa24.21■■□□□ 1.47
USE1-205ENST00000594724 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.18■■□□□ 1.46
USE1-205ENST00000594724 HNRNPUL2Q1KMD3 747 aaKnown RBP24.18■■□□□ 1.46
USE1-205ENST00000594724 PPRC1Q5VV67 1664 aaKnown RBP24.16■■□□□ 1.46
USE1-205ENST00000594724 NUP153P49790 1475 aaKnown RBP24.15■■□□□ 1.46
USE1-205ENST00000594724 MAP3K4Q9Y6R4 1608 aa24.15■■□□□ 1.46
USE1-205ENST00000594724 KDM6BO15054 1643 aa24.14■■□□□ 1.46
USE1-205ENST00000594724 ARHGAP35Q9NRY4 1499 aa24.13■■□□□ 1.45
USE1-205ENST00000594724 CD109Q6YHK3 1445 aa24.1■■□□□ 1.45
USE1-205ENST00000594724 TEX14Q8IWB6 1497 aa24.07■■□□□ 1.44
USE1-205ENST00000594724 ATP1B4Q9UN42 357 aaPredicted RBP24.06■■□□□ 1.44
USE1-205ENST00000594724 FMN1Q68DA7 1419 aa24.03■■□□□ 1.44
USE1-205ENST00000594724 CFAP43Q8NDM7 1665 aa24.03■■□□□ 1.44
USE1-205ENST00000594724 COL17A1Q9UMD9 1497 aaPredicted RBP24.03■■□□□ 1.44
USE1-205ENST00000594724 PLEKHD1A6NEE1 506 aa24.02■■□□□ 1.44
USE1-205ENST00000594724 MAGI3Q5TCQ9 1506 aa24■■□□□ 1.43
USE1-205ENST00000594724 CDK13Q14004 1512 aaKnown RBP23.98■■□□□ 1.43
USE1-205ENST00000594724 ABCA9Q8IUA7 1624 aa23.95■■□□□ 1.43
USE1-205ENST00000594724 AEBP2Q6ZN18 517 aaPredicted RBP23.92■■□□□ 1.42
USE1-205ENST00000594724 HECW1Q76N89 1606 aa23.92■■□□□ 1.42
USE1-205ENST00000594724 CLIP1P30622 1438 aa23.91■■□□□ 1.42
USE1-205ENST00000594724 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.84■■□□□ 1.41
USE1-205ENST00000594724 CDK11AQ9UQ88 783 aaPredicted RBP23.84■■□□□ 1.41
USE1-205ENST00000594724 LOC105371045A0A1W2PR82 267 aa23.83■■□□□ 1.41
USE1-205ENST00000594724 CASKIN1Q8WXD9 1431 aa23.83■■□□□ 1.4
USE1-205ENST00000594724 PCF11O94913 1555 aaKnown RBP23.82■■□□□ 1.4
USE1-205ENST00000594724 ARAP3Q8WWN8 1544 aa23.81■■□□□ 1.4
USE1-205ENST00000594724 PHLDB1Q86UU1 1377 aa23.8■■□□□ 1.4
USE1-205ENST00000594724 LRRIQ1Q96JM4 1722 aa23.8■■□□□ 1.4
USE1-205ENST00000594724 TTC37Q6PGP7 1564 aa23.79■■□□□ 1.4
USE1-205ENST00000594724 KDM4FA0A1W2PPD8 638 aa23.79■■□□□ 1.4
USE1-205ENST00000594724 NEO1Q92859 1461 aa23.79■■□□□ 1.4
USE1-205ENST00000594724 RAPGEF3O95398 923 aa23.78■■□□□ 1.4
USE1-205ENST00000594724 TROQ12816 1431 aaPredicted RBP23.76■■□□□ 1.39
USE1-205ENST00000594724 CEP162Q5TB80 1403 aa23.75■■□□□ 1.39
USE1-205ENST00000594724 FANCAO15360 1455 aa23.74■■□□□ 1.39
USE1-205ENST00000594724 AKNAQ7Z591 1439 aa23.73■■□□□ 1.39
USE1-205ENST00000594724 CCDC18Q5T9S5 1454 aa23.73■■□□□ 1.39
USE1-205ENST00000594724 FYCO1Q9BQS8 1478 aa23.73■■□□□ 1.39
USE1-205ENST00000594724 KIF14Q15058 1648 aa23.72■■□□□ 1.39
USE1-205ENST00000594724 PLCH2O75038 1416 aa23.71■■□□□ 1.39
USE1-205ENST00000594724 DENND4BO75064 1496 aaPredicted RBP23.66■■□□□ 1.38
USE1-205ENST00000594724 EFCAB2Q5VUJ9 269 aa23.65■■□□□ 1.38
USE1-205ENST00000594724 CFAP74Q9C0B2 1584 aa23.65■■□□□ 1.38
USE1-205ENST00000594724 ADGRL1O94910 1474 aa23.64■■□□□ 1.38
USE1-205ENST00000594724 FRMPD1Q5SYB0 1578 aa23.64■■□□□ 1.37
USE1-205ENST00000594724 MYO5CQ9NQX4 1742 aa23.62■■□□□ 1.37
USE1-205ENST00000594724 SCAPERQ9BY12 1400 aa23.6■■□□□ 1.37
USE1-205ENST00000594724 RICTORQ6R327 1708 aa23.58■■□□□ 1.37
USE1-205ENST00000594724 ARHGAP5Q13017 1502 aa23.58■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms