RNA–Protein interactions for RNA: ENST00000594399.1

USE1-204, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 2

Gene USE1, Length 613 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-204ENST00000594399 EHMT2Q96KQ7 1210 aa17.68■□□□□ 0.42
USE1-204ENST00000594399 RIMBP3CA6NJZ7 1639 aa17.67■□□□□ 0.42
USE1-204ENST00000594399 RIMBP3BA6NNM3 1639 aa17.67■□□□□ 0.42
USE1-204ENST00000594399 RIMBP3Q9UFD9 1639 aa17.67■□□□□ 0.42
USE1-204ENST00000594399 ARHGEF11O15085 1522 aa17.67■□□□□ 0.42
USE1-204ENST00000594399 UBTFP17480 764 aaKnown RBP17.63■□□□□ 0.41
USE1-204ENST00000594399 CLASP1Q7Z460 1538 aa17.62■□□□□ 0.41
USE1-204ENST00000594399 KIAA0586Q9BVV6 1533 aa17.62■□□□□ 0.41
USE1-204ENST00000594399 IQGAP2Q13576 1575 aa17.62■□□□□ 0.41
USE1-204ENST00000594399 LOC105371045A0A1W2PR82 267 aa17.6■□□□□ 0.41
USE1-204ENST00000594399 TNIKQ9UKE5 1360 aa17.6■□□□□ 0.41
USE1-204ENST00000594399 CYB5RLQ6IPT4 315 aa17.55■□□□□ 0.4
USE1-204ENST00000594399 SHROOM2Q13796 1616 aa17.54■□□□□ 0.4
USE1-204ENST00000594399 UGGT2Q9NYU1 1516 aa17.52■□□□□ 0.4
USE1-204ENST00000594399 ARAP1Q96P48 1450 aa17.5■□□□□ 0.39
USE1-204ENST00000594399 CEP162Q5TB80 1403 aa17.49■□□□□ 0.39
USE1-204ENST00000594399 EFCAB5A4FU69 1503 aa17.49■□□□□ 0.39
USE1-204ENST00000594399 SAMD9Q5K651 1589 aa17.49■□□□□ 0.39
USE1-204ENST00000594399 KIAA0556O60303 1618 aa17.46■□□□□ 0.39
USE1-204ENST00000594399 CLIP1P30622 1438 aa17.46■□□□□ 0.39
USE1-204ENST00000594399 JPH4Q96JJ6 628 aa17.45■□□□□ 0.38
USE1-204ENST00000594399 DISP1Q96F81 1524 aa17.44■□□□□ 0.38
USE1-204ENST00000594399 RANGAP1P46060 587 aaPredicted RBP17.44■□□□□ 0.38
USE1-204ENST00000594399 PRG4Q92954 1404 aaPredicted RBP17.43■□□□□ 0.38
USE1-204ENST00000594399 ARHGAP35Q9NRY4 1499 aa17.43■□□□□ 0.38
USE1-204ENST00000594399 CARMIL2Q6F5E8 1435 aa17.42■□□□□ 0.38
USE1-204ENST00000594399 ERCC6L2Q5T890 1561 aa17.4■□□□□ 0.38
USE1-204ENST00000594399 FHOD3Q2V2M9 1422 aa17.36■□□□□ 0.37
USE1-204ENST00000594399 P3H3Q8IVL6 736 aa17.32■□□□□ 0.36
USE1-204ENST00000594399 FMN1Q68DA7 1419 aa17.29■□□□□ 0.36
USE1-204ENST00000594399 TRHP20396 242 aaPredicted RBP17.28■□□□□ 0.36
USE1-204ENST00000594399 PTPRGP23470 1445 aa17.27■□□□□ 0.35
USE1-204ENST00000594399 VPS8Q8N3P4 1428 aa17.25■□□□□ 0.35
USE1-204ENST00000594399 PCF11O94913 1555 aaKnown RBP17.24■□□□□ 0.35
USE1-204ENST00000594399 TTBK1Q5TCY1 1321 aaPredicted RBP17.23■□□□□ 0.35
USE1-204ENST00000594399 RAPGEF6Q8TEU7 1601 aa17.23■□□□□ 0.35
USE1-204ENST00000594399 ABCA8O94911 1581 aa17.22■□□□□ 0.35
USE1-204ENST00000594399 FYCO1Q9BQS8 1478 aa17.21■□□□□ 0.35
USE1-204ENST00000594399 HECW1Q76N89 1606 aa17.21■□□□□ 0.35
USE1-204ENST00000594399 PLB1Q6P1J6 1458 aa17.2■□□□□ 0.34
USE1-204ENST00000594399 CASKIN1Q8WXD9 1431 aa17.19■□□□□ 0.34
USE1-204ENST00000594399 ABCC2Q92887 1545 aa17.18■□□□□ 0.34
USE1-204ENST00000594399 UACAQ9BZF9 1416 aa17.18■□□□□ 0.34
USE1-204ENST00000594399 UHRF1BP1LA0JNW5 1464 aa17.16■□□□□ 0.34
USE1-204ENST00000594399 ADCY10Q96PN6 1610 aa17.15■□□□□ 0.34
USE1-204ENST00000594399 NUP153P49790 1475 aaKnown RBP17.14■□□□□ 0.33
USE1-204ENST00000594399 CCDC18Q5T9S5 1454 aa17.12■□□□□ 0.33
USE1-204ENST00000594399 LRRIQ1Q96JM4 1722 aa17.11■□□□□ 0.33
USE1-204ENST00000594399 CFAP43Q8NDM7 1665 aa17.1■□□□□ 0.33
USE1-204ENST00000594399 NPM1P06748 294 aaKnown RBP eCLIP17.1■□□□□ 0.33
USE1-204ENST00000594399 EPRSP07814 1512 aaKnown RBP17.1■□□□□ 0.33
USE1-204ENST00000594399 ATP1B4Q9UN42 357 aaPredicted RBP17.08■□□□□ 0.32
USE1-204ENST00000594399 ZCCHC11Q5TAX3 1644 aaKnown RBP17.07■□□□□ 0.32
USE1-204ENST00000594399 CDK13Q14004 1512 aaKnown RBP17.07■□□□□ 0.32
USE1-204ENST00000594399 KDM5BQ9UGL1 1544 aa17.07■□□□□ 0.32
USE1-204ENST00000594399 TIAM1Q13009 1591 aa17.06■□□□□ 0.32
USE1-204ENST00000594399 MAP3K1Q13233 1512 aa17.05■□□□□ 0.32
USE1-204ENST00000594399 ATP10BO94823 1461 aa17.04■□□□□ 0.32
USE1-204ENST00000594399 ARID3CA6NKF2 412 aa17.03■□□□□ 0.32
USE1-204ENST00000594399 APLP2Q06481 763 aa17.01■□□□□ 0.31
USE1-204ENST00000594399 MAPKBP1O60336 1514 aa16.98■□□□□ 0.31
USE1-204ENST00000594399 EHBP1L1Q8N3D4 1523 aa16.98■□□□□ 0.31
USE1-204ENST00000594399 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.98■□□□□ 0.31
USE1-204ENST00000594399 HNRNPUL2Q1KMD3 747 aaKnown RBP16.98■□□□□ 0.31
USE1-204ENST00000594399 MAGI3Q5TCQ9 1506 aa16.96■□□□□ 0.31
USE1-204ENST00000594399 LRRC9Q6ZRR7 1453 aa16.95■□□□□ 0.3
USE1-204ENST00000594399 CDK11AQ9UQ88 783 aaPredicted RBP16.95■□□□□ 0.3
USE1-204ENST00000594399 MTUS2Q5JR59 1369 aa16.94■□□□□ 0.3
USE1-204ENST00000594399 ABCC10Q5T3U5 1492 aa16.93■□□□□ 0.3
USE1-204ENST00000594399 WDR7Q9Y4E6 1490 aa16.93■□□□□ 0.3
USE1-204ENST00000594399 FAM69CQ0P6D2 419 aa16.93■□□□□ 0.3
USE1-204ENST00000594399 TROQ12816 1431 aaPredicted RBP16.93■□□□□ 0.3
USE1-204ENST00000594399 ASXL2Q76L83 1435 aa16.93■□□□□ 0.3
USE1-204ENST00000594399 KIF14Q15058 1648 aa16.92■□□□□ 0.3
USE1-204ENST00000594399 KIF13AQ9H1H9 1805 aa16.91■□□□□ 0.3
USE1-204ENST00000594399 PLEKHD1A6NEE1 506 aa16.9■□□□□ 0.3
USE1-204ENST00000594399 SUPT6HQ7KZ85 1726 aaKnown RBP16.9■□□□□ 0.3
USE1-204ENST00000594399 KANK4Q5T7N3 995 aaPredicted RBP16.88■□□□□ 0.29
USE1-204ENST00000594399 DIP2BQ9P265 1576 aa16.87■□□□□ 0.29
USE1-204ENST00000594399 NCOA2Q15596 1464 aa16.84■□□□□ 0.29
USE1-204ENST00000594399 TTC37Q6PGP7 1564 aa16.82■□□□□ 0.28
USE1-204ENST00000594399 ABCA9Q8IUA7 1624 aa16.81■□□□□ 0.28
USE1-204ENST00000594399 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.81■□□□□ 0.28
USE1-204ENST00000594399 PPARGC1BQ86YN6 1023 aaKnown RBP16.81■□□□□ 0.28
USE1-204ENST00000594399 GLI2P10070 1586 aa16.8■□□□□ 0.28
USE1-204ENST00000594399 ITSN2Q9NZM3 1697 aa16.79■□□□□ 0.28
USE1-204ENST00000594399 KCNH8Q96L42 1107 aa16.79■□□□□ 0.28
USE1-204ENST00000594399 MYO5CQ9NQX4 1742 aa16.78■□□□□ 0.28
USE1-204ENST00000594399 PREX2Q70Z35 1606 aa16.77■□□□□ 0.27
USE1-204ENST00000594399 CDC42BPAQ5VT25 1732 aa16.76■□□□□ 0.27
USE1-204ENST00000594399 CCNB3Q8WWL7 1395 aa16.76■□□□□ 0.27
USE1-204ENST00000594399 MAP3K4Q9Y6R4 1608 aa16.75■□□□□ 0.27
USE1-204ENST00000594399 PHLDB1Q86UU1 1377 aa16.75■□□□□ 0.27
USE1-204ENST00000594399 TSPOAP1O95153 1857 aa16.74■□□□□ 0.27
USE1-204ENST00000594399 MYOM3Q5VTT5 1437 aa16.74■□□□□ 0.27
USE1-204ENST00000594399 GPATCH8Q9UKJ3 1502 aaKnown RBP16.73■□□□□ 0.27
USE1-204ENST00000594399 ARAP3Q8WWN8 1544 aa16.72■□□□□ 0.27
USE1-204ENST00000594399 CDC42BPBQ9Y5S2 1711 aa16.7■□□□□ 0.26
USE1-204ENST00000594399 ARHGAP5Q13017 1502 aa16.7■□□□□ 0.26
USE1-204ENST00000594399 PLCH2O75038 1416 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms