RNA–Protein interactions for RNA: ENST00000593251.5

RETREG3-212, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 4

Gene RETREG3, Length 565 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-212ENST00000593251 AEBP2Q6ZN18 517 aaPredicted RBP30.81■■■□□ 2.52
RETREG3-212ENST00000593251 CUL7Q14999 1698 aa30.75■■■□□ 2.51
RETREG3-212ENST00000593251 IGF1RP08069 1367 aa30.75■■■□□ 2.51
RETREG3-212ENST00000593251 KIF27Q86VH2 1401 aa30.73■■■□□ 2.51
RETREG3-212ENST00000593251 ADCY10Q96PN6 1610 aa30.7■■■□□ 2.51
RETREG3-212ENST00000593251 KIAA0586Q9BVV6 1533 aa30.69■■■□□ 2.5
RETREG3-212ENST00000593251 NPM1P06748 294 aaKnown RBP eCLIP30.63■■■□□ 2.49
RETREG3-212ENST00000593251 ABCC10Q5T3U5 1492 aa30.62■■■□□ 2.49
RETREG3-212ENST00000593251 MAPKBP1O60336 1514 aa30.62■■■□□ 2.49
RETREG3-212ENST00000593251 FAM69CQ0P6D2 419 aa30.61■■■□□ 2.49
RETREG3-212ENST00000593251 DIP2BQ9P265 1576 aa30.59■■■□□ 2.49
RETREG3-212ENST00000593251 CARMIL1Q5VZK9 1371 aa30.54■■■□□ 2.48
RETREG3-212ENST00000593251 TSPOAP1O95153 1857 aa30.5■■■□□ 2.47
RETREG3-212ENST00000593251 TTBK1Q5TCY1 1321 aaPredicted RBP30.49■■■□□ 2.47
RETREG3-212ENST00000593251 PTPRGP23470 1445 aa30.45■■■□□ 2.46
RETREG3-212ENST00000593251 IQGAP2Q13576 1575 aa30.44■■■□□ 2.46
RETREG3-212ENST00000593251 CARMIL2Q6F5E8 1435 aa30.39■■■□□ 2.45
RETREG3-212ENST00000593251 TNIKQ9UKE5 1360 aa30.38■■■□□ 2.45
RETREG3-212ENST00000593251 KDM6BO15054 1643 aa30.37■■■□□ 2.45
RETREG3-212ENST00000593251 ABCC2Q92887 1545 aa30.32■■■□□ 2.44
RETREG3-212ENST00000593251 DISP1Q96F81 1524 aa30.29■■■□□ 2.44
RETREG3-212ENST00000593251 RAPGEF2Q9Y4G8 1499 aa30.26■■■□□ 2.44
RETREG3-212ENST00000593251 ASXL2Q76L83 1435 aa30.24■■■□□ 2.43
RETREG3-212ENST00000593251 UHRF1BP1LA0JNW5 1464 aa30.22■■■□□ 2.43
RETREG3-212ENST00000593251 PPRC1Q5VV67 1664 aaKnown RBP30.22■■■□□ 2.43
RETREG3-212ENST00000593251 UACAQ9BZF9 1416 aa30.22■■■□□ 2.43
RETREG3-212ENST00000593251 UGGT2Q9NYU1 1516 aa30.2■■■□□ 2.42
RETREG3-212ENST00000593251 PLB1Q6P1J6 1458 aa30.19■■■□□ 2.42
RETREG3-212ENST00000593251 KIAA0556O60303 1618 aa30.18■■■□□ 2.42
RETREG3-212ENST00000593251 GLI2P10070 1586 aa30.17■■■□□ 2.42
RETREG3-212ENST00000593251 CTTNBP2Q8WZ74 1663 aa30.14■■■□□ 2.42
RETREG3-212ENST00000593251 ZCCHC11Q5TAX3 1644 aaKnown RBP30.14■■■□□ 2.41
RETREG3-212ENST00000593251 KDM5BQ9UGL1 1544 aa30.11■■■□□ 2.41
RETREG3-212ENST00000593251 KDM4FA0A1W2PPD8 638 aa30.1■■■□□ 2.41
RETREG3-212ENST00000593251 EPRSP07814 1512 aaKnown RBP30.06■■■□□ 2.4
RETREG3-212ENST00000593251 MAP3K4Q9Y6R4 1608 aa30.06■■■□□ 2.4
RETREG3-212ENST00000593251 COL17A1Q9UMD9 1497 aaPredicted RBP29.96■■■□□ 2.39
RETREG3-212ENST00000593251 GOLGA3Q08378 1498 aa29.92■■■□□ 2.38
RETREG3-212ENST00000593251 WDR7Q9Y4E6 1490 aa29.92■■■□□ 2.38
RETREG3-212ENST00000593251 TEX14Q8IWB6 1497 aa29.91■■■□□ 2.38
RETREG3-212ENST00000593251 PRXQ9BXM0 1461 aa29.9■■■□□ 2.38
RETREG3-212ENST00000593251 ABCA8O94911 1581 aa29.89■■■□□ 2.38
RETREG3-212ENST00000593251 ADGRL1O94910 1474 aa29.85■■■□□ 2.37
RETREG3-212ENST00000593251 CFAP43Q8NDM7 1665 aa29.81■■■□□ 2.36
RETREG3-212ENST00000593251 KCNH8Q96L42 1107 aa29.8■■■□□ 2.36
RETREG3-212ENST00000593251 CD109Q6YHK3 1445 aa29.75■■■□□ 2.35
RETREG3-212ENST00000593251 P3H3Q8IVL6 736 aa29.73■■■□□ 2.35
RETREG3-212ENST00000593251 MAGI3Q5TCQ9 1506 aa29.71■■■□□ 2.35
RETREG3-212ENST00000593251 ARID3CA6NKF2 412 aa29.71■■■□□ 2.35
RETREG3-212ENST00000593251 SAMD9Q5K651 1589 aa29.63■■■□□ 2.33
RETREG3-212ENST00000593251 ATP10BO94823 1461 aa29.62■■■□□ 2.33
RETREG3-212ENST00000593251 CSRNP3Q8WYN3 585 aa29.62■■■□□ 2.33
RETREG3-212ENST00000593251 FAM9AQ8IZU1 332 aaPredicted RBP29.58■■■□□ 2.33
RETREG3-212ENST00000593251 RAPGEF6Q8TEU7 1601 aa29.57■■■□□ 2.32
RETREG3-212ENST00000593251 KIF21BO75037 1637 aa29.56■■■□□ 2.32
RETREG3-212ENST00000593251 ABCA9Q8IUA7 1624 aa29.53■■■□□ 2.32
RETREG3-212ENST00000593251 HECW2Q9P2P5 1572 aa29.52■■■□□ 2.32
RETREG3-212ENST00000593251 RANGAP1P46060 587 aaPredicted RBP29.51■■■□□ 2.31
RETREG3-212ENST00000593251 ARAP3Q8WWN8 1544 aa29.5■■■□□ 2.31
RETREG3-212ENST00000593251 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.45■■■□□ 2.31
RETREG3-212ENST00000593251 HNRNPUL2Q1KMD3 747 aaKnown RBP29.45■■■□□ 2.31
RETREG3-212ENST00000593251 EEA1Q15075 1411 aa29.43■■■□□ 2.3
RETREG3-212ENST00000593251 FHOD3Q2V2M9 1422 aa29.43■■■□□ 2.3
RETREG3-212ENST00000593251 NUP153P49790 1475 aaKnown RBP29.42■■■□□ 2.3
RETREG3-212ENST00000593251 ILDR1Q86SU0 546 aaPredicted RBP29.36■■■□□ 2.29
RETREG3-212ENST00000593251 RAPGEF3O95398 923 aa29.35■■■□□ 2.29
RETREG3-212ENST00000593251 PHLDB1Q86UU1 1377 aa29.35■■■□□ 2.29
RETREG3-212ENST00000593251 NEO1Q92859 1461 aa29.34■■■□□ 2.29
RETREG3-212ENST00000593251 FRMPD1Q5SYB0 1578 aa29.32■■■□□ 2.28
RETREG3-212ENST00000593251 ADAMTSL3P82987 1691 aa29.28■■■□□ 2.28
RETREG3-212ENST00000593251 EFCAB5A4FU69 1503 aa29.25■■■□□ 2.27
RETREG3-212ENST00000593251 PLEKHD1A6NEE1 506 aa29.23■■■□□ 2.27
RETREG3-212ENST00000593251 BCORL1Q5H9F3 1711 aa29.22■■■□□ 2.27
RETREG3-212ENST00000593251 RICTORQ6R327 1708 aa29.21■■■□□ 2.27
RETREG3-212ENST00000593251 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP29.2■■■□□ 2.276e-6■■■■■ 38.2
RETREG3-212ENST00000593251 TTC37Q6PGP7 1564 aa29.2■■■□□ 2.26
RETREG3-212ENST00000593251 PTPRMP28827 1452 aa29.19■■■□□ 2.26
RETREG3-212ENST00000593251 EHMT2Q96KQ7 1210 aa29.19■■■□□ 2.26
RETREG3-212ENST00000593251 CDK13Q14004 1512 aaKnown RBP29.17■■■□□ 2.26
RETREG3-212ENST00000593251 MADDQ8WXG6 1647 aa29.16■■■□□ 2.26
RETREG3-212ENST00000593251 AKNAQ7Z591 1439 aa29.16■■■□□ 2.26
RETREG3-212ENST00000593251 CFAP74Q9C0B2 1584 aa29.16■■■□□ 2.26
RETREG3-212ENST00000593251 ARID4BQ4LE39 1312 aaPredicted RBP29.16■■■□□ 2.26
RETREG3-212ENST00000593251 FANCAO15360 1455 aa29.15■■■□□ 2.26
RETREG3-212ENST00000593251 DENND4BO75064 1496 aaPredicted RBP29.15■■■□□ 2.26
RETREG3-212ENST00000593251 ARHGEF40Q8TER5 1519 aa29.15■■■□□ 2.26
RETREG3-212ENST00000593251 RIMS1Q86UR5 1692 aaKnown RBP29.08■■■□□ 2.25
RETREG3-212ENST00000593251 UBTFP17480 764 aaKnown RBP29.06■■■□□ 2.24
RETREG3-212ENST00000593251 SIGLEC1Q9BZZ2 1709 aa29.05■■■□□ 2.24
RETREG3-212ENST00000593251 ATP1B4Q9UN42 357 aaPredicted RBP29.03■■■□□ 2.24
RETREG3-212ENST00000593251 ZMYM4Q5VZL5 1548 aa29.03■■■□□ 2.24
RETREG3-212ENST00000593251 HECW1Q76N89 1606 aa29.02■■■□□ 2.24
RETREG3-212ENST00000593251 ZFYVE16Q7Z3T8 1539 aa29.01■■■□□ 2.23
RETREG3-212ENST00000593251 ARHGAP35Q9NRY4 1499 aa29■■■□□ 2.23
RETREG3-212ENST00000593251 YEATS2Q9ULM3 1422 aa29■■■□□ 2.23
RETREG3-212ENST00000593251 MYO5CQ9NQX4 1742 aa28.98■■■□□ 2.23
RETREG3-212ENST00000593251 FMN1Q68DA7 1419 aa28.97■■■□□ 2.23
RETREG3-212ENST00000593251 PCF11O94913 1555 aaKnown RBP28.96■■■□□ 2.23
RETREG3-212ENST00000593251 PLCH2O75038 1416 aa28.96■■■□□ 2.23
RETREG3-212ENST00000593251 CHIC1Q5VXU3 224 aa28.95■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms