RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 DIP2BQ9P265 1576 aa18.28■□□□□ 0.52
LIG3-212ENST00000590181 MAPKBP1O60336 1514 aa18.26■□□□□ 0.51
LIG3-212ENST00000590181 ADCY10Q96PN6 1610 aa18.26■□□□□ 0.51
LIG3-212ENST00000590181 ABCC10Q5T3U5 1492 aa18.21■□□□□ 0.51
LIG3-212ENST00000590181 KDM6BO15054 1643 aa18.2■□□□□ 0.5
LIG3-212ENST00000590181 TSPOAP1O95153 1857 aa18.19■□□□□ 0.5
LIG3-212ENST00000590181 CUL7Q14999 1698 aa18.18■□□□□ 0.5
LIG3-212ENST00000590181 JPH4Q96JJ6 628 aa18.14■□□□□ 0.49
LIG3-212ENST00000590181 FAM69CQ0P6D2 419 aa18.11■□□□□ 0.49
LIG3-212ENST00000590181 KIAA0586Q9BVV6 1533 aa18.09■□□□□ 0.49
LIG3-212ENST00000590181 NPM1P06748 294 aaKnown RBP eCLIP18.08■□□□□ 0.48
LIG3-212ENST00000590181 KIF27Q86VH2 1401 aa18.05■□□□□ 0.48
LIG3-212ENST00000590181 PPRC1Q5VV67 1664 aaKnown RBP18.03■□□□□ 0.48
LIG3-212ENST00000590181 IQGAP2Q13576 1575 aa17.99■□□□□ 0.47
LIG3-212ENST00000590181 ABCC2Q92887 1545 aa17.98■□□□□ 0.47
LIG3-212ENST00000590181 IGF1RP08069 1367 aa17.96■□□□□ 0.47
LIG3-212ENST00000590181 GLI2P10070 1586 aa17.96■□□□□ 0.46
LIG3-212ENST00000590181 PTPRGP23470 1445 aa17.93■□□□□ 0.46
LIG3-212ENST00000590181 KDM4FA0A1W2PPD8 638 aa17.93■□□□□ 0.46
LIG3-212ENST00000590181 CARMIL2Q6F5E8 1435 aa17.92■□□□□ 0.46
LIG3-212ENST00000590181 TNIKQ9UKE5 1360 aa17.91■□□□□ 0.46
LIG3-212ENST00000590181 MAP3K4Q9Y6R4 1608 aa17.9■□□□□ 0.46
LIG3-212ENST00000590181 ASXL2Q76L83 1435 aa17.9■□□□□ 0.46
LIG3-212ENST00000590181 PLB1Q6P1J6 1458 aa17.9■□□□□ 0.46
LIG3-212ENST00000590181 UHRF1BP1LA0JNW5 1464 aa17.88■□□□□ 0.45
LIG3-212ENST00000590181 ADGRL1O94910 1474 aa17.88■□□□□ 0.45
LIG3-212ENST00000590181 ZCCHC11Q5TAX3 1644 aaKnown RBP17.88■□□□□ 0.45
LIG3-212ENST00000590181 TTBK1Q5TCY1 1321 aaPredicted RBP17.88■□□□□ 0.45
LIG3-212ENST00000590181 CARMIL1Q5VZK9 1371 aa17.86■□□□□ 0.45
LIG3-212ENST00000590181 DISP1Q96F81 1524 aa17.85■□□□□ 0.45
LIG3-212ENST00000590181 KIAA0556O60303 1618 aa17.84■□□□□ 0.45
LIG3-212ENST00000590181 UACAQ9BZF9 1416 aa17.82■□□□□ 0.44
LIG3-212ENST00000590181 EPRSP07814 1512 aaKnown RBP17.82■□□□□ 0.44
LIG3-212ENST00000590181 CTTNBP2Q8WZ74 1663 aa17.81■□□□□ 0.44
LIG3-212ENST00000590181 UGGT2Q9NYU1 1516 aa17.81■□□□□ 0.44
LIG3-212ENST00000590181 KDM5BQ9UGL1 1544 aa17.81■□□□□ 0.44
LIG3-212ENST00000590181 TEX14Q8IWB6 1497 aa17.8■□□□□ 0.44
LIG3-212ENST00000590181 HECW2Q9P2P5 1572 aa17.79■□□□□ 0.44
LIG3-212ENST00000590181 COL17A1Q9UMD9 1497 aaPredicted RBP17.75■□□□□ 0.43
LIG3-212ENST00000590181 RAPGEF2Q9Y4G8 1499 aa17.74■□□□□ 0.43
LIG3-212ENST00000590181 CFAP43Q8NDM7 1665 aa17.74■□□□□ 0.43
LIG3-212ENST00000590181 WDR7Q9Y4E6 1490 aa17.73■□□□□ 0.43
LIG3-212ENST00000590181 ILDR1Q86SU0 546 aaPredicted RBP17.71■□□□□ 0.43
LIG3-212ENST00000590181 KIF21BO75037 1637 aa17.68■□□□□ 0.42
LIG3-212ENST00000590181 EEA1Q15075 1411 aa17.65■□□□□ 0.42
LIG3-212ENST00000590181 ABCA8O94911 1581 aa17.65■□□□□ 0.42
LIG3-212ENST00000590181 MAGI3Q5TCQ9 1506 aa17.62■□□□□ 0.41
LIG3-212ENST00000590181 GOLGA3Q08378 1498 aa17.62■□□□□ 0.41
LIG3-212ENST00000590181 PRXQ9BXM0 1461 aa17.61■□□□□ 0.41
LIG3-212ENST00000590181 FAM9AQ8IZU1 332 aaPredicted RBP17.58■□□□□ 0.4
LIG3-212ENST00000590181 CSRNP3Q8WYN3 585 aa17.58■□□□□ 0.4
LIG3-212ENST00000590181 CD109Q6YHK3 1445 aa17.57■□□□□ 0.4
LIG3-212ENST00000590181 ABCA9Q8IUA7 1624 aa17.51■□□□□ 0.39
LIG3-212ENST00000590181 ARAP3Q8WWN8 1544 aa17.49■□□□□ 0.39
LIG3-212ENST00000590181 ADAMTSL3P82987 1691 aa17.48■□□□□ 0.39
LIG3-212ENST00000590181 KCNH8Q96L42 1107 aa17.47■□□□□ 0.39
LIG3-212ENST00000590181 SAMD9Q5K651 1589 aa17.45■□□□□ 0.38
LIG3-212ENST00000590181 RAPGEF6Q8TEU7 1601 aa17.45■□□□□ 0.38
LIG3-212ENST00000590181 FRMPD1Q5SYB0 1578 aa17.45■□□□□ 0.38
LIG3-212ENST00000590181 BCORL1Q5H9F3 1711 aa17.44■□□□□ 0.38
LIG3-212ENST00000590181 MADDQ8WXG6 1647 aa17.43■□□□□ 0.38
LIG3-212ENST00000590181 CHIC1Q5VXU3 224 aa17.41■□□□□ 0.38
LIG3-212ENST00000590181 ARHGEF40Q8TER5 1519 aa17.41■□□□□ 0.38
LIG3-212ENST00000590181 ATP10BO94823 1461 aa17.4■□□□□ 0.38
LIG3-212ENST00000590181 PTPRMP28827 1452 aa17.4■□□□□ 0.38
LIG3-212ENST00000590181 ARID3CA6NKF2 412 aa17.39■□□□□ 0.37
LIG3-212ENST00000590181 RIMS1Q86UR5 1692 aaKnown RBP17.38■□□□□ 0.37
LIG3-212ENST00000590181 NEO1Q92859 1461 aa17.37■□□□□ 0.37
LIG3-212ENST00000590181 PCF11O94913 1555 aaKnown RBP17.37■□□□□ 0.37
LIG3-212ENST00000590181 RICTORQ6R327 1708 aa17.36■□□□□ 0.37
LIG3-212ENST00000590181 CFAP74Q9C0B2 1584 aa17.36■□□□□ 0.37
LIG3-212ENST00000590181 PHLDB1Q86UU1 1377 aa17.34■□□□□ 0.37
LIG3-212ENST00000590181 NUP153P49790 1475 aaKnown RBP17.31■□□□□ 0.36
LIG3-212ENST00000590181 P3H3Q8IVL6 736 aa17.3■□□□□ 0.36
LIG3-212ENST00000590181 LMTK3Q96Q04 1460 aa17.3■□□□□ 0.36
LIG3-212ENST00000590181 FBXO41Q8TF61 875 aa17.29■□□□□ 0.36
LIG3-212ENST00000590181 RAPGEF3O95398 923 aa17.28■□□□□ 0.36
LIG3-212ENST00000590181 TTC37Q6PGP7 1564 aa17.28■□□□□ 0.36
LIG3-212ENST00000590181 SIGLEC1Q9BZZ2 1709 aa17.27■□□□□ 0.35
LIG3-212ENST00000590181 EFCAB5A4FU69 1503 aa17.26■□□□□ 0.35
LIG3-212ENST00000590181 FER1L4A9Z1Z3 1794 aa17.26■□□□□ 0.35
LIG3-212ENST00000590181 ZMYM4Q5VZL5 1548 aa17.26■□□□□ 0.35
LIG3-212ENST00000590181 FHOD3Q2V2M9 1422 aa17.24■□□□□ 0.35
LIG3-212ENST00000590181 ARID4BQ4LE39 1312 aaPredicted RBP17.23■□□□□ 0.35
LIG3-212ENST00000590181 ZFYVE16Q7Z3T8 1539 aa17.23■□□□□ 0.35
LIG3-212ENST00000590181 FANCAO15360 1455 aa17.23■□□□□ 0.35
LIG3-212ENST00000590181 DENND4BO75064 1496 aaPredicted RBP17.23■□□□□ 0.35
LIG3-212ENST00000590181 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.22■□□□□ 0.35
LIG3-212ENST00000590181 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.22■□□□□ 0.35
LIG3-212ENST00000590181 HNRNPUL2Q1KMD3 747 aaKnown RBP17.22■□□□□ 0.35
LIG3-212ENST00000590181 UBTFP17480 764 aaKnown RBP17.21■□□□□ 0.35
LIG3-212ENST00000590181 AKNAQ7Z591 1439 aa17.19■□□□□ 0.34
LIG3-212ENST00000590181 HECW1Q76N89 1606 aa17.17■□□□□ 0.34
LIG3-212ENST00000590181 MYO5CQ9NQX4 1742 aa17.16■□□□□ 0.34
LIG3-212ENST00000590181 POGZQ7Z3K3 1410 aa17.16■□□□□ 0.34
LIG3-212ENST00000590181 PREX1Q8TCU6 1659 aa17.16■□□□□ 0.34
LIG3-212ENST00000590181 CDK13Q14004 1512 aaKnown RBP17.15■□□□□ 0.34
LIG3-212ENST00000590181 YEATS2Q9ULM3 1422 aa17.14■□□□□ 0.33
LIG3-212ENST00000590181 FMN1Q68DA7 1419 aa17.13■□□□□ 0.33
LIG3-212ENST00000590181 RANGAP1P46060 587 aaPredicted RBP17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms