RNA–Protein interactions for RNA: ENST00000586813.5

TRAF4-216, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 789 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-216ENST00000586813 KIF27Q86VH2 1401 aa34■■■■□ 3.03
TRAF4-216ENST00000586813 IGF1RP08069 1367 aa33.95■■■■□ 3.02
TRAF4-216ENST00000586813 KIF13AQ9H1H9 1805 aa33.95■■■■□ 3.02
TRAF4-216ENST00000586813 KIAA0586Q9BVV6 1533 aa33.9■■■■□ 3.02
TRAF4-216ENST00000586813 ADCY10Q96PN6 1610 aa33.82■■■■□ 3
TRAF4-216ENST00000586813 MAPKBP1O60336 1514 aa33.76■■■■□ 3
TRAF4-216ENST00000586813 CARMIL1Q5VZK9 1371 aa33.73■■■□□ 2.99
TRAF4-216ENST00000586813 ABCC10Q5T3U5 1492 aa33.69■■■□□ 2.98
TRAF4-216ENST00000586813 DIP2BQ9P265 1576 aa33.68■■■□□ 2.98
TRAF4-216ENST00000586813 NPM1P06748 294 aaKnown RBP eCLIP33.67■■■□□ 2.98
TRAF4-216ENST00000586813 IQGAP2Q13576 1575 aa33.64■■■□□ 2.98
TRAF4-216ENST00000586813 FAM69CQ0P6D2 419 aa33.58■■■□□ 2.97
TRAF4-216ENST00000586813 AEBP2Q6ZN18 517 aaPredicted RBP33.58■■■□□ 2.97
TRAF4-216ENST00000586813 PTPRGP23470 1445 aa33.55■■■□□ 2.96
TRAF4-216ENST00000586813 CARMIL2Q6F5E8 1435 aa33.55■■■□□ 2.96
TRAF4-216ENST00000586813 TNIKQ9UKE5 1360 aa33.51■■■□□ 2.96
TRAF4-216ENST00000586813 RAPGEF2Q9Y4G8 1499 aa33.46■■■□□ 2.95
TRAF4-216ENST00000586813 TSPOAP1O95153 1857 aa33.46■■■□□ 2.95
TRAF4-216ENST00000586813 ABCC2Q92887 1545 aa33.44■■■□□ 2.94
TRAF4-216ENST00000586813 DISP1Q96F81 1524 aa33.44■■■□□ 2.94
TRAF4-216ENST00000586813 TTBK1Q5TCY1 1321 aaPredicted RBP33.43■■■□□ 2.94
TRAF4-216ENST00000586813 UGGT2Q9NYU1 1516 aa33.39■■■□□ 2.94
TRAF4-216ENST00000586813 KDM6BO15054 1643 aa33.38■■■□□ 2.93
TRAF4-216ENST00000586813 UHRF1BP1LA0JNW5 1464 aa33.37■■■□□ 2.93
TRAF4-216ENST00000586813 KIAA0556O60303 1618 aa33.34■■■□□ 2.93
TRAF4-216ENST00000586813 CTTNBP2Q8WZ74 1663 aa33.33■■■□□ 2.93
TRAF4-216ENST00000586813 UACAQ9BZF9 1416 aa33.33■■■□□ 2.93
TRAF4-216ENST00000586813 ASXL2Q76L83 1435 aa33.3■■■□□ 2.92
TRAF4-216ENST00000586813 PLB1Q6P1J6 1458 aa33.29■■■□□ 2.92
TRAF4-216ENST00000586813 GLI2P10070 1586 aa33.27■■■□□ 2.92
TRAF4-216ENST00000586813 PPRC1Q5VV67 1664 aaKnown RBP33.24■■■□□ 2.91
TRAF4-216ENST00000586813 KDM5BQ9UGL1 1544 aa33.23■■■□□ 2.91
TRAF4-216ENST00000586813 ZCCHC11Q5TAX3 1644 aaKnown RBP33.22■■■□□ 2.91
TRAF4-216ENST00000586813 MAP3K4Q9Y6R4 1608 aa33.13■■■□□ 2.89
TRAF4-216ENST00000586813 PRXQ9BXM0 1461 aa33.12■■■□□ 2.89
TRAF4-216ENST00000586813 EPRSP07814 1512 aaKnown RBP33.12■■■□□ 2.89
TRAF4-216ENST00000586813 GOLGA3Q08378 1498 aa33.1■■■□□ 2.89
TRAF4-216ENST00000586813 ABCA8O94911 1581 aa33.01■■■□□ 2.88
TRAF4-216ENST00000586813 WDR7Q9Y4E6 1490 aa33■■■□□ 2.87
TRAF4-216ENST00000586813 TEX14Q8IWB6 1497 aa32.97■■■□□ 2.87
TRAF4-216ENST00000586813 KDM4FA0A1W2PPD8 638 aa32.94■■■□□ 2.86
TRAF4-216ENST00000586813 COL17A1Q9UMD9 1497 aaPredicted RBP32.91■■■□□ 2.86
TRAF4-216ENST00000586813 CFAP43Q8NDM7 1665 aa32.88■■■□□ 2.85
TRAF4-216ENST00000586813 SAMD9Q5K651 1589 aa32.8■■■□□ 2.84
TRAF4-216ENST00000586813 MAGI3Q5TCQ9 1506 aa32.78■■■□□ 2.84
TRAF4-216ENST00000586813 CSRNP3Q8WYN3 585 aa32.77■■■□□ 2.84
TRAF4-216ENST00000586813 ADGRL1O94910 1474 aa32.76■■■□□ 2.84
TRAF4-216ENST00000586813 CD109Q6YHK3 1445 aa32.76■■■□□ 2.83
TRAF4-216ENST00000586813 KCNH8Q96L42 1107 aa32.72■■■□□ 2.83
TRAF4-216ENST00000586813 EEA1Q15075 1411 aa32.71■■■□□ 2.83
TRAF4-216ENST00000586813 P3H3Q8IVL6 736 aa32.71■■■□□ 2.83
TRAF4-216ENST00000586813 FAM9AQ8IZU1 332 aaPredicted RBP32.68■■■□□ 2.82
TRAF4-216ENST00000586813 ATP10BO94823 1461 aa32.67■■■□□ 2.82
TRAF4-216ENST00000586813 RAPGEF6Q8TEU7 1601 aa32.67■■■□□ 2.82
TRAF4-216ENST00000586813 ARID3CA6NKF2 412 aa32.63■■■□□ 2.81
TRAF4-216ENST00000586813 ABCA9Q8IUA7 1624 aa32.6■■■□□ 2.81
TRAF4-216ENST00000586813 KIF21BO75037 1637 aa32.53■■■□□ 2.8
TRAF4-216ENST00000586813 ARAP3Q8WWN8 1544 aa32.52■■■□□ 2.8
TRAF4-216ENST00000586813 NUP153P49790 1475 aaKnown RBP32.51■■■□□ 2.79
TRAF4-216ENST00000586813 FHOD3Q2V2M9 1422 aa32.5■■■□□ 2.79
TRAF4-216ENST00000586813 RANGAP1P46060 587 aaPredicted RBP32.46■■■□□ 2.79
TRAF4-216ENST00000586813 EFCAB5A4FU69 1503 aa32.45■■■□□ 2.78
TRAF4-216ENST00000586813 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.4■■■□□ 2.78
TRAF4-216ENST00000586813 HNRNPUL2Q1KMD3 747 aaKnown RBP32.4■■■□□ 2.78
TRAF4-216ENST00000586813 PHLDB1Q86UU1 1377 aa32.4■■■□□ 2.78
TRAF4-216ENST00000586813 NEO1Q92859 1461 aa32.38■■■□□ 2.77
TRAF4-216ENST00000586813 HECW2Q9P2P5 1572 aa32.35■■■□□ 2.77
TRAF4-216ENST00000586813 FRMPD1Q5SYB0 1578 aa32.32■■■□□ 2.77
TRAF4-216ENST00000586813 RAPGEF3O95398 923 aa32.25■■■□□ 2.75
TRAF4-216ENST00000586813 CFAP74Q9C0B2 1584 aa32.24■■■□□ 2.75
TRAF4-216ENST00000586813 PLEKHD1A6NEE1 506 aa32.24■■■□□ 2.75
TRAF4-216ENST00000586813 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP32.24■■■□□ 2.752e-6■■■□□ 16.3
TRAF4-216ENST00000586813 TTC37Q6PGP7 1564 aa32.23■■■□□ 2.75
TRAF4-216ENST00000586813 RICTORQ6R327 1708 aa32.21■■■□□ 2.75
TRAF4-216ENST00000586813 ADAMTSL3P82987 1691 aa32.21■■■□□ 2.75
TRAF4-216ENST00000586813 CDK13Q14004 1512 aaKnown RBP32.21■■■□□ 2.75
TRAF4-216ENST00000586813 FANCAO15360 1455 aa32.16■■■□□ 2.74
TRAF4-216ENST00000586813 ARHGEF40Q8TER5 1519 aa32.16■■■□□ 2.74
TRAF4-216ENST00000586813 BCORL1Q5H9F3 1711 aa32.14■■■□□ 2.74
TRAF4-216ENST00000586813 HECW1Q76N89 1606 aa32.14■■■□□ 2.74
TRAF4-216ENST00000586813 DENND4BO75064 1496 aaPredicted RBP32.13■■■□□ 2.73
TRAF4-216ENST00000586813 UBTFP17480 764 aaKnown RBP32.13■■■□□ 2.73
TRAF4-216ENST00000586813 AKNAQ7Z591 1439 aa32.13■■■□□ 2.73
TRAF4-216ENST00000586813 CHIC1Q5VXU3 224 aa32.12■■■□□ 2.73
TRAF4-216ENST00000586813 EHMT2Q96KQ7 1210 aa32.12■■■□□ 2.73
TRAF4-216ENST00000586813 ARHGAP35Q9NRY4 1499 aa32.11■■■□□ 2.73
TRAF4-216ENST00000586813 FMN1Q68DA7 1419 aa32.1■■■□□ 2.73
TRAF4-216ENST00000586813 PTPRMP28827 1452 aa32.08■■■□□ 2.73
TRAF4-216ENST00000586813 MADDQ8WXG6 1647 aa32.07■■■□□ 2.72
TRAF4-216ENST00000586813 ZMYM4Q5VZL5 1548 aa32.06■■■□□ 2.72
TRAF4-216ENST00000586813 MYO5CQ9NQX4 1742 aa32.02■■■□□ 2.72
TRAF4-216ENST00000586813 ARID4BQ4LE39 1312 aaPredicted RBP32■■■□□ 2.71
TRAF4-216ENST00000586813 LRRIQ1Q96JM4 1722 aa31.99■■■□□ 2.71
TRAF4-216ENST00000586813 ZFYVE16Q7Z3T8 1539 aa31.98■■■□□ 2.71
TRAF4-216ENST00000586813 PLCH2O75038 1416 aa31.98■■■□□ 2.71
TRAF4-216ENST00000586813 KIF14Q15058 1648 aa31.97■■■□□ 2.71
TRAF4-216ENST00000586813 RIMS1Q86UR5 1692 aaKnown RBP31.96■■■□□ 2.71
TRAF4-216ENST00000586813 ILDR1Q86SU0 546 aaPredicted RBP31.96■■■□□ 2.71
TRAF4-216ENST00000586813 SIGLEC1Q9BZZ2 1709 aa31.96■■■□□ 2.71
TRAF4-216ENST00000586813 ATP1B4Q9UN42 357 aaPredicted RBP31.96■■■□□ 2.71
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms