RNA–Protein interactions for RNA: ENST00000584655.5

RFFL-212, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 2 BASIC

Gene RFFL, Length 4,039 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-212ENST00000584655 SENP3Q9H4L4 574 aaPredicted RBP15.09■□□□□ 0.01
RFFL-212ENST00000584655 MYT1LQ9UL68 1186 aa15.09■□□□□ 0.01
RFFL-212ENST00000584655 TOP2BQ02880 1626 aa15.08■□□□□ 0.01
RFFL-212ENST00000584655 KCNH8Q96L42 1107 aa15.08■□□□□ 0
RFFL-212ENST00000584655 FOXD1Q16676 465 aa15.07■□□□□ 0
RFFL-212ENST00000584655 ZNF326Q5BKZ1 582 aaKnown RBP15.07■□□□□ 0
RFFL-212ENST00000584655 MTUS2Q5JR59 1369 aa15.06■□□□□ 0
RFFL-212ENST00000584655 KIF21BO75037 1637 aa15.06■□□□□ 0
RFFL-212ENST00000584655 TOPBP1Q92547 1522 aa15.05■□□□□ -0
RFFL-212ENST00000584655 URB2Q14146 1524 aaKnown RBP15.02■□□□□ -0
RFFL-212ENST00000584655 PRXQ9BXM0 1461 aa15.02□□□□□ -0.01
RFFL-212ENST00000584655 SENP3-EIF4A1A0A087X0R7 540 aa15.01□□□□□ -0.01
RFFL-212ENST00000584655 ARHGAP35Q9NRY4 1499 aa15□□□□□ -0.01
RFFL-212ENST00000584655 ZNF608Q9ULD9 1512 aaPredicted RBP15□□□□□ -0.01
RFFL-212ENST00000584655 GAPVD1Q14C86 1478 aa14.97□□□□□ -0.01
RFFL-212ENST00000584655 ZNF644Q9H582 1327 aaPredicted RBP14.96□□□□□ -0.01
RFFL-212ENST00000584655 ZNF316A6NFI3 1004 aaPredicted RBP14.95□□□□□ -0.02
RFFL-212ENST00000584655 MIER1Q8N108 512 aa14.94□□□□□ -0.02
RFFL-212ENST00000584655 CCNB3Q8WWL7 1395 aa14.93□□□□□ -0.02
RFFL-212ENST00000584655 PHLDB1Q86UU1 1377 aa14.92□□□□□ -0.02
RFFL-212ENST00000584655 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.91□□□□□ -0.02
RFFL-212ENST00000584655 JPH4Q96JJ6 628 aa14.89□□□□□ -0.03
RFFL-212ENST00000584655 DDX10Q13206 875 aaKnown RBP14.88□□□□□ -0.03
RFFL-212ENST00000584655 RAB3GAP2Q9H2M9 1393 aa14.85□□□□□ -0.03
RFFL-212ENST00000584655 CFDP1Q9UEE9 299 aaPredicted RBP14.81□□□□□ -0.04
RFFL-212ENST00000584655 KDM2AQ9Y2K7 1162 aa14.81□□□□□ -0.04
RFFL-212ENST00000584655 BIVM-ERCC5R4GMW8 1640 aa14.8□□□□□ -0.04
RFFL-212ENST00000584655 DNMBPQ6XZF7 1577 aa14.79□□□□□ -0.04
RFFL-212ENST00000584655 KIF21AQ7Z4S6 1674 aa14.78□□□□□ -0.04
RFFL-212ENST00000584655 PLPPR3Q6T4P5 718 aa14.77□□□□□ -0.04
RFFL-212ENST00000584655 HNRNPMP52272 730 aaKnown RBP eCLIP14.76□□□□□ -0.052e-6■■■■□ 21.2
RFFL-212ENST00000584655 PLEKHD1A6NEE1 506 aa14.76□□□□□ -0.05
RFFL-212ENST00000584655 SNAPC4Q5SXM2 1469 aa14.75□□□□□ -0.05
RFFL-212ENST00000584655 ABCA10Q8WWZ4 1543 aa14.75□□□□□ -0.05
RFFL-212ENST00000584655 DHX57Q6P158 1386 aaKnown RBP14.75□□□□□ -0.05
RFFL-212ENST00000584655 RGL3Q3MIN7 710 aa14.74□□□□□ -0.05
RFFL-212ENST00000584655 FHAD1B1AJZ9 1412 aa14.74□□□□□ -0.05
RFFL-212ENST00000584655 CDK11AQ9UQ88 783 aaPredicted RBP14.74□□□□□ -0.05
RFFL-212ENST00000584655 MRC2Q9UBG0 1479 aa14.73□□□□□ -0.05
RFFL-212ENST00000584655 SLC4A1APQ9BWU0 796 aaKnown RBP14.73□□□□□ -0.05
RFFL-212ENST00000584655 GTF3C3Q9Y5Q9 886 aa14.71□□□□□ -0.05
RFFL-212ENST00000584655 CDK13Q14004 1512 aaKnown RBP14.71□□□□□ -0.06
RFFL-212ENST00000584655 ERICH3Q5RHP9 1530 aa14.71□□□□□ -0.06
RFFL-212ENST00000584655 SCAF1Q9H7N4 1312 aaKnown RBP14.7□□□□□ -0.06
RFFL-212ENST00000584655 LAMC3Q9Y6N6 1575 aa14.69□□□□□ -0.06
RFFL-212ENST00000584655 LRRC9Q6ZRR7 1453 aa14.68□□□□□ -0.06
RFFL-212ENST00000584655 BCANQ96GW7 911 aa14.67□□□□□ -0.06
RFFL-212ENST00000584655 TONSLQ96HA7 1378 aa14.66□□□□□ -0.06
RFFL-212ENST00000584655 FMN1Q68DA7 1419 aa14.66□□□□□ -0.06
RFFL-212ENST00000584655 PCF11O94913 1555 aaKnown RBP14.65□□□□□ -0.06
RFFL-212ENST00000584655 CENPBP07199 599 aaPredicted RBP14.65□□□□□ -0.06
RFFL-212ENST00000584655 PRG4Q92954 1404 aaPredicted RBP14.65□□□□□ -0.06
RFFL-212ENST00000584655 GRIN2BQ13224 1484 aa14.64□□□□□ -0.07
RFFL-212ENST00000584655 SETD5Q9C0A6 1442 aa14.64□□□□□ -0.07
RFFL-212ENST00000584655 PLB1Q6P1J6 1458 aa14.64□□□□□ -0.07
RFFL-212ENST00000584655 PRDM2Q13029 1718 aa14.62□□□□□ -0.07
RFFL-212ENST00000584655 TSPY4P0CV99 314 aa14.62□□□□□ -0.07
RFFL-212ENST00000584655 TSPY10P0CW01 314 aa14.62□□□□□ -0.07
RFFL-212ENST00000584655 CHGAP10645 457 aaKnown RBP14.59□□□□□ -0.07
RFFL-212ENST00000584655 CYB5RLQ6IPT4 315 aa14.58□□□□□ -0.07
RFFL-212ENST00000584655 PTPRKQ15262 1439 aa14.57□□□□□ -0.08
RFFL-212ENST00000584655 OSCARQ8IYS5 282 aa14.57□□□□□ -0.08
RFFL-212ENST00000584655 MPHOSPH9Q99550 1183 aa14.57□□□□□ -0.08
RFFL-212ENST00000584655 NCOA2Q15596 1464 aa14.57□□□□□ -0.08
RFFL-212ENST00000584655 FGD6Q6ZV73 1430 aa14.55□□□□□ -0.08
RFFL-212ENST00000584655 CASKIN1Q8WXD9 1431 aa14.55□□□□□ -0.08
RFFL-212ENST00000584655 PKD2Q13563 968 aa14.55□□□□□ -0.08
RFFL-212ENST00000584655 TIAM1Q13009 1591 aa14.55□□□□□ -0.08
RFFL-212ENST00000584655 SALL2Q9Y467 1007 aaPredicted RBP14.55□□□□□ -0.08
RFFL-212ENST00000584655 ACIN1Q9UKV3 1341 aaKnown RBP14.55□□□□□ -0.08
RFFL-212ENST00000584655 PTPRGP23470 1445 aa14.54□□□□□ -0.08
RFFL-212ENST00000584655 IFT140Q96RY7 1462 aa14.53□□□□□ -0.08
RFFL-212ENST00000584655 L3MBTL2Q969R5 705 aa14.53□□□□□ -0.08
RFFL-212ENST00000584655 PELP1Q8IZL8 1130 aaKnown RBP14.52□□□□□ -0.08
RFFL-212ENST00000584655 RRBP1Q9P2E9 1410 aaKnown RBP14.51□□□□□ -0.09
RFFL-212ENST00000584655 NUTM2DQ5VT03 806 aaPredicted RBP14.5□□□□□ -0.09
RFFL-212ENST00000584655 AFAP1Q8N556 730 aa14.5□□□□□ -0.09
RFFL-212ENST00000584655 NPM1P06748 294 aaKnown RBP eCLIP14.49□□□□□ -0.09
RFFL-212ENST00000584655 CARMIL2Q6F5E8 1435 aa14.49□□□□□ -0.09
RFFL-212ENST00000584655 GRIN2AQ12879 1464 aa14.49□□□□□ -0.09
RFFL-212ENST00000584655 IRX6P78412 446 aaPredicted RBP14.48□□□□□ -0.09
RFFL-212ENST00000584655 FAM9BQ8IZU0 186 aa14.47□□□□□ -0.09
RFFL-212ENST00000584655 PPP1R15AO75807 674 aaPredicted RBP14.47□□□□□ -0.09
RFFL-212ENST00000584655 DCAF11Q8TEB1 546 aa14.47□□□□□ -0.09
RFFL-212ENST00000584655 MLECQ14165 292 aa14.46□□□□□ -0.09
RFFL-212ENST00000584655 MYOM3Q5VTT5 1437 aa14.46□□□□□ -0.1
RFFL-212ENST00000584655 THOC2Q8NI27 1593 aaKnown RBP14.45□□□□□ -0.1
RFFL-212ENST00000584655 EPRSP07814 1512 aaKnown RBP14.45□□□□□ -0.1
RFFL-212ENST00000584655 IQGAP2Q13576 1575 aa14.44□□□□□ -0.1
RFFL-212ENST00000584655 CCDC18Q5T9S5 1454 aa14.44□□□□□ -0.1
RFFL-212ENST00000584655 HSPA5P11021 654 aaKnown RBP14.44□□□□□ -0.1
RFFL-212ENST00000584655 NUP155O75694 1391 aa14.44□□□□□ -0.1
RFFL-212ENST00000584655 FYCO1Q9BQS8 1478 aa14.44□□□□□ -0.1
RFFL-212ENST00000584655 GGT6Q6P531 493 aa14.44□□□□□ -0.1
RFFL-212ENST00000584655 ANP32CO43423 234 aa14.43□□□□□ -0.1
RFFL-212ENST00000584655 TARBP1Q13395 1621 aaKnown RBP14.43□□□□□ -0.1
RFFL-212ENST00000584655 EIF4G3O43432 1585 aaKnown RBP14.41□□□□□ -0.1
RFFL-212ENST00000584655 MAGI3Q5TCQ9 1506 aa14.41□□□□□ -0.1
RFFL-212ENST00000584655 KIAA0586Q9BVV6 1533 aa14.4□□□□□ -0.1
RFFL-212ENST00000584655 ARHGEF11O15085 1522 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms