RNA–Protein interactions for RNA: ENST00000583804.2

TOP3A-216, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 5

Gene TOP3A, Length 1,465 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-216ENST00000583804 LOC105371045A0A1W2PR82 267 aa17.83■□□□□ 0.45
TOP3A-216ENST00000583804 GOLGA3Q08378 1498 aa17.83■□□□□ 0.44
TOP3A-216ENST00000583804 CEP170Q5SW79 1584 aa17.82■□□□□ 0.44
TOP3A-216ENST00000583804 KIAA0586Q9BVV6 1533 aa17.77■□□□□ 0.44
TOP3A-216ENST00000583804 CLASP1Q7Z460 1538 aa17.75■□□□□ 0.43
TOP3A-216ENST00000583804 JPH4Q96JJ6 628 aa17.75■□□□□ 0.43
TOP3A-216ENST00000583804 RANGAP1P46060 587 aaPredicted RBP17.74■□□□□ 0.43
TOP3A-216ENST00000583804 CTTNBP2Q8WZ74 1663 aa17.71■□□□□ 0.43
TOP3A-216ENST00000583804 IQGAP2Q13576 1575 aa17.7■□□□□ 0.42
TOP3A-216ENST00000583804 TNIKQ9UKE5 1360 aa17.67■□□□□ 0.42
TOP3A-216ENST00000583804 PRG4Q92954 1404 aaPredicted RBP17.65■□□□□ 0.42
TOP3A-216ENST00000583804 SHROOM2Q13796 1616 aa17.63■□□□□ 0.41
TOP3A-216ENST00000583804 UGGT2Q9NYU1 1516 aa17.61■□□□□ 0.41
TOP3A-216ENST00000583804 P3H3Q8IVL6 736 aa17.61■□□□□ 0.41
TOP3A-216ENST00000583804 CARMIL2Q6F5E8 1435 aa17.6■□□□□ 0.41
TOP3A-216ENST00000583804 TTBK1Q5TCY1 1321 aaPredicted RBP17.59■□□□□ 0.41
TOP3A-216ENST00000583804 ERCC6L2Q5T890 1561 aa17.58■□□□□ 0.4
TOP3A-216ENST00000583804 ARHGEF11O15085 1522 aa17.58■□□□□ 0.4
TOP3A-216ENST00000583804 DISP1Q96F81 1524 aa17.56■□□□□ 0.4
TOP3A-216ENST00000583804 CLIP1P30622 1438 aa17.53■□□□□ 0.4
TOP3A-216ENST00000583804 RIMBP3CA6NJZ7 1639 aa17.53■□□□□ 0.4
TOP3A-216ENST00000583804 RIMBP3BA6NNM3 1639 aa17.53■□□□□ 0.4
TOP3A-216ENST00000583804 RIMBP3Q9UFD9 1639 aa17.53■□□□□ 0.4
TOP3A-216ENST00000583804 CEP162Q5TB80 1403 aa17.53■□□□□ 0.4
TOP3A-216ENST00000583804 KIAA0556O60303 1618 aa17.53■□□□□ 0.4
TOP3A-216ENST00000583804 SAMD9Q5K651 1589 aa17.51■□□□□ 0.39
TOP3A-216ENST00000583804 EFCAB5A4FU69 1503 aa17.5■□□□□ 0.39
TOP3A-216ENST00000583804 ARHGAP35Q9NRY4 1499 aa17.5■□□□□ 0.39
TOP3A-216ENST00000583804 CYB5RLQ6IPT4 315 aa17.5■□□□□ 0.39
TOP3A-216ENST00000583804 PTPRGP23470 1445 aa17.49■□□□□ 0.39
TOP3A-216ENST00000583804 FHOD3Q2V2M9 1422 aa17.49■□□□□ 0.39
TOP3A-216ENST00000583804 ARAP1Q96P48 1450 aa17.46■□□□□ 0.39
TOP3A-216ENST00000583804 ATP1B4Q9UN42 357 aaPredicted RBP17.38■□□□□ 0.37
TOP3A-216ENST00000583804 FMN1Q68DA7 1419 aa17.38■□□□□ 0.37
TOP3A-216ENST00000583804 UACAQ9BZF9 1416 aa17.37■□□□□ 0.37
TOP3A-216ENST00000583804 PLB1Q6P1J6 1458 aa17.36■□□□□ 0.37
TOP3A-216ENST00000583804 ARID3CA6NKF2 412 aa17.33■□□□□ 0.37
TOP3A-216ENST00000583804 NPM1P06748 294 aaKnown RBP eCLIP17.31■□□□□ 0.36
TOP3A-216ENST00000583804 ABCA8O94911 1581 aa17.31■□□□□ 0.36
TOP3A-216ENST00000583804 RAPGEF6Q8TEU7 1601 aa17.29■□□□□ 0.36
TOP3A-216ENST00000583804 ABCC2Q92887 1545 aa17.29■□□□□ 0.36
TOP3A-216ENST00000583804 UHRF1BP1LA0JNW5 1464 aa17.29■□□□□ 0.36
TOP3A-216ENST00000583804 VPS8Q8N3P4 1428 aa17.29■□□□□ 0.36
TOP3A-216ENST00000583804 ADCY10Q96PN6 1610 aa17.28■□□□□ 0.36
TOP3A-216ENST00000583804 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.28■□□□□ 0.36
TOP3A-216ENST00000583804 HNRNPUL2Q1KMD3 747 aaKnown RBP17.28■□□□□ 0.36
TOP3A-216ENST00000583804 CASKIN1Q8WXD9 1431 aa17.28■□□□□ 0.36
TOP3A-216ENST00000583804 PCF11O94913 1555 aaKnown RBP17.25■□□□□ 0.35
TOP3A-216ENST00000583804 NUP153P49790 1475 aaKnown RBP17.25■□□□□ 0.35
TOP3A-216ENST00000583804 FYCO1Q9BQS8 1478 aa17.23■□□□□ 0.35
TOP3A-216ENST00000583804 HECW1Q76N89 1606 aa17.23■□□□□ 0.35
TOP3A-216ENST00000583804 ATP10BO94823 1461 aa17.22■□□□□ 0.35
TOP3A-216ENST00000583804 KDM5BQ9UGL1 1544 aa17.21■□□□□ 0.35
TOP3A-216ENST00000583804 EPRSP07814 1512 aaKnown RBP17.19■□□□□ 0.34
TOP3A-216ENST00000583804 APLP2Q06481 763 aa17.19■□□□□ 0.34
TOP3A-216ENST00000583804 ZCCHC11Q5TAX3 1644 aaKnown RBP17.18■□□□□ 0.34
TOP3A-216ENST00000583804 CDK13Q14004 1512 aaKnown RBP17.18■□□□□ 0.34
TOP3A-216ENST00000583804 PLEKHD1A6NEE1 506 aa17.16■□□□□ 0.34
TOP3A-216ENST00000583804 CDK11AQ9UQ88 783 aaPredicted RBP17.16■□□□□ 0.34
TOP3A-216ENST00000583804 CCDC18Q5T9S5 1454 aa17.16■□□□□ 0.34
TOP3A-216ENST00000583804 PPARGC1BQ86YN6 1023 aaKnown RBP17.15■□□□□ 0.34
TOP3A-216ENST00000583804 ASXL2Q76L83 1435 aa17.13■□□□□ 0.33
TOP3A-216ENST00000583804 LRRIQ1Q96JM4 1722 aa17.13■□□□□ 0.33
TOP3A-216ENST00000583804 KCNH8Q96L42 1107 aa17.12■□□□□ 0.33
TOP3A-216ENST00000583804 MAPKBP1O60336 1514 aa17.09■□□□□ 0.33
TOP3A-216ENST00000583804 WDR7Q9Y4E6 1490 aa17.08■□□□□ 0.32
TOP3A-216ENST00000583804 TIAM1Q13009 1591 aa17.07■□□□□ 0.32
TOP3A-216ENST00000583804 MTUS2Q5JR59 1369 aa17.07■□□□□ 0.32
TOP3A-216ENST00000583804 TRHP20396 242 aaPredicted RBP17.05■□□□□ 0.32
TOP3A-216ENST00000583804 KANK4Q5T7N3 995 aaPredicted RBP17.05■□□□□ 0.32
TOP3A-216ENST00000583804 MAP3K1Q13233 1512 aa17.05■□□□□ 0.32
TOP3A-216ENST00000583804 TROQ12816 1431 aaPredicted RBP17.05■□□□□ 0.32
TOP3A-216ENST00000583804 CFAP43Q8NDM7 1665 aa17.04■□□□□ 0.32
TOP3A-216ENST00000583804 FAM69CQ0P6D2 419 aa17.04■□□□□ 0.32
TOP3A-216ENST00000583804 MAGI3Q5TCQ9 1506 aa17.03■□□□□ 0.32
TOP3A-216ENST00000583804 LRRC9Q6ZRR7 1453 aa17.01■□□□□ 0.31
TOP3A-216ENST00000583804 ABCC10Q5T3U5 1492 aa17.01■□□□□ 0.31
TOP3A-216ENST00000583804 EHBP1L1Q8N3D4 1523 aa16.98■□□□□ 0.31
TOP3A-216ENST00000583804 DIP2BQ9P265 1576 aa16.97■□□□□ 0.31
TOP3A-216ENST00000583804 KIF14Q15058 1648 aa16.96■□□□□ 0.3
TOP3A-216ENST00000583804 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.93■□□□□ 0.3
TOP3A-216ENST00000583804 GLI2P10070 1586 aa16.93■□□□□ 0.3
TOP3A-216ENST00000583804 CD109Q6YHK3 1445 aa16.92■□□□□ 0.3
TOP3A-216ENST00000583804 NCOA2Q15596 1464 aa16.92■□□□□ 0.3
TOP3A-216ENST00000583804 SUPT6HQ7KZ85 1726 aaKnown RBP16.91■□□□□ 0.3
TOP3A-216ENST00000583804 CCNB3Q8WWL7 1395 aa16.9■□□□□ 0.3
TOP3A-216ENST00000583804 KIF13AQ9H1H9 1805 aa16.9■□□□□ 0.3
TOP3A-216ENST00000583804 ABCA9Q8IUA7 1624 aa16.9■□□□□ 0.3
TOP3A-216ENST00000583804 TTC37Q6PGP7 1564 aa16.9■□□□□ 0.3
TOP3A-216ENST00000583804 MAP3K4Q9Y6R4 1608 aa16.86■□□□□ 0.29
TOP3A-216ENST00000583804 CFDP1Q9UEE9 299 aaPredicted RBP16.86■□□□□ 0.29
TOP3A-216ENST00000583804 GPATCH8Q9UKJ3 1502 aaKnown RBP16.85■□□□□ 0.29
TOP3A-216ENST00000583804 PLCH2O75038 1416 aa16.85■□□□□ 0.29
TOP3A-216ENST00000583804 EFCAB2Q5VUJ9 269 aa16.85■□□□□ 0.29
TOP3A-216ENST00000583804 ZNF777Q9ULD5 760 aaPredicted RBP16.85■□□□□ 0.29
TOP3A-216ENST00000583804 TSPOAP1O95153 1857 aa16.85■□□□□ 0.29
TOP3A-216ENST00000583804 PHLDB1Q86UU1 1377 aa16.84■□□□□ 0.29
TOP3A-216ENST00000583804 MYO5CQ9NQX4 1742 aa16.83■□□□□ 0.28
TOP3A-216ENST00000583804 ARHGAP5Q13017 1502 aa16.82■□□□□ 0.28
TOP3A-216ENST00000583804 MYOM3Q5VTT5 1437 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms