RNA–Protein interactions for RNA: ENST00000583708.5

UBBP4-201, Transcript of ubiquitin B pseudogene 4, humanhuman

BASIC

Gene UBBP4, Length 689 nt, Biotype transcribed unprocessed pseudogene, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBBP4-201ENST00000583708 GOLGA3Q08378 1498 aa15.19■□□□□ 0.02
UBBP4-201ENST00000583708 CEP170Q5SW79 1584 aa15.17■□□□□ 0.02
UBBP4-201ENST00000583708 UBTFP17480 764 aaKnown RBP15.14■□□□□ 0.01
UBBP4-201ENST00000583708 CARMIL2Q6F5E8 1435 aa15.11■□□□□ 0.01
UBBP4-201ENST00000583708 IQGAP2Q13576 1575 aa15.11■□□□□ 0.01
UBBP4-201ENST00000583708 SHROOM2Q13796 1616 aa15.09■□□□□ 0.01
UBBP4-201ENST00000583708 TNIKQ9UKE5 1360 aa15.09■□□□□ 0.01
UBBP4-201ENST00000583708 UGGT2Q9NYU1 1516 aa15.08■□□□□ 0.01
UBBP4-201ENST00000583708 PRG4Q92954 1404 aaPredicted RBP15.07■□□□□ 0
UBBP4-201ENST00000583708 CTTNBP2Q8WZ74 1663 aa15.05■□□□□ -0
UBBP4-201ENST00000583708 ARHGEF11O15085 1522 aa15.03■□□□□ -0
UBBP4-201ENST00000583708 EFCAB5A4FU69 1503 aa14.99□□□□□ -0.01
UBBP4-201ENST00000583708 DISP1Q96F81 1524 aa14.98□□□□□ -0.01
UBBP4-201ENST00000583708 PTPRGP23470 1445 aa14.98□□□□□ -0.01
UBBP4-201ENST00000583708 LOC105371045A0A1W2PR82 267 aa14.96□□□□□ -0.01
UBBP4-201ENST00000583708 RIMBP3CA6NJZ7 1639 aa14.95□□□□□ -0.02
UBBP4-201ENST00000583708 RIMBP3BA6NNM3 1639 aa14.95□□□□□ -0.02
UBBP4-201ENST00000583708 RIMBP3Q9UFD9 1639 aa14.95□□□□□ -0.02
UBBP4-201ENST00000583708 EHMT2Q96KQ7 1210 aa14.94□□□□□ -0.02
UBBP4-201ENST00000583708 KIAA0556O60303 1618 aa14.93□□□□□ -0.02
UBBP4-201ENST00000583708 CYB5RLQ6IPT4 315 aa14.93□□□□□ -0.02
UBBP4-201ENST00000583708 SAMD9Q5K651 1589 aa14.93□□□□□ -0.02
UBBP4-201ENST00000583708 CLIP1P30622 1438 aa14.92□□□□□ -0.02
UBBP4-201ENST00000583708 ARAP1Q96P48 1450 aa14.91□□□□□ -0.02
UBBP4-201ENST00000583708 ERCC6L2Q5T890 1561 aa14.9□□□□□ -0.02
UBBP4-201ENST00000583708 FMN1Q68DA7 1419 aa14.89□□□□□ -0.03
UBBP4-201ENST00000583708 UHRF1BP1LA0JNW5 1464 aa14.88□□□□□ -0.03
UBBP4-201ENST00000583708 ARHGAP35Q9NRY4 1499 aa14.88□□□□□ -0.03
UBBP4-201ENST00000583708 CEP162Q5TB80 1403 aa14.87□□□□□ -0.03
UBBP4-201ENST00000583708 UACAQ9BZF9 1416 aa14.87□□□□□ -0.03
UBBP4-201ENST00000583708 NPM1P06748 294 aaKnown RBP eCLIP14.86□□□□□ -0.03
UBBP4-201ENST00000583708 RANGAP1P46060 587 aaPredicted RBP14.86□□□□□ -0.03
UBBP4-201ENST00000583708 P3H3Q8IVL6 736 aa14.86□□□□□ -0.03
UBBP4-201ENST00000583708 FHOD3Q2V2M9 1422 aa14.83□□□□□ -0.04
UBBP4-201ENST00000583708 ABCC2Q92887 1545 aa14.79□□□□□ -0.04
UBBP4-201ENST00000583708 ABCA8O94911 1581 aa14.78□□□□□ -0.04
UBBP4-201ENST00000583708 TTBK1Q5TCY1 1321 aaPredicted RBP14.78□□□□□ -0.04
UBBP4-201ENST00000583708 CASKIN1Q8WXD9 1431 aa14.76□□□□□ -0.05
UBBP4-201ENST00000583708 KDM5BQ9UGL1 1544 aa14.76□□□□□ -0.05
UBBP4-201ENST00000583708 PLB1Q6P1J6 1458 aa14.76□□□□□ -0.05
UBBP4-201ENST00000583708 CDK11AQ9UQ88 783 aaPredicted RBP14.75□□□□□ -0.05
UBBP4-201ENST00000583708 RAPGEF6Q8TEU7 1601 aa14.73□□□□□ -0.05
UBBP4-201ENST00000583708 FYCO1Q9BQS8 1478 aa14.72□□□□□ -0.05
UBBP4-201ENST00000583708 ADCY10Q96PN6 1610 aa14.72□□□□□ -0.05
UBBP4-201ENST00000583708 VPS8Q8N3P4 1428 aa14.72□□□□□ -0.05
UBBP4-201ENST00000583708 ATP10BO94823 1461 aa14.69□□□□□ -0.06
UBBP4-201ENST00000583708 NUP153P49790 1475 aaKnown RBP14.69□□□□□ -0.06
UBBP4-201ENST00000583708 CCDC18Q5T9S5 1454 aa14.69□□□□□ -0.06
UBBP4-201ENST00000583708 PLEKHD1A6NEE1 506 aa14.69□□□□□ -0.06
UBBP4-201ENST00000583708 MAPKBP1O60336 1514 aa14.69□□□□□ -0.06
UBBP4-201ENST00000583708 HECW1Q76N89 1606 aa14.68□□□□□ -0.06
UBBP4-201ENST00000583708 ATP1B4Q9UN42 357 aaPredicted RBP14.68□□□□□ -0.06
UBBP4-201ENST00000583708 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.66□□□□□ -0.06
UBBP4-201ENST00000583708 HNRNPUL2Q1KMD3 747 aaKnown RBP14.66□□□□□ -0.06
UBBP4-201ENST00000583708 EPRSP07814 1512 aaKnown RBP14.66□□□□□ -0.06
UBBP4-201ENST00000583708 APLP2Q06481 763 aa14.65□□□□□ -0.06
UBBP4-201ENST00000583708 MAP3K1Q13233 1512 aa14.64□□□□□ -0.07
UBBP4-201ENST00000583708 ASXL2Q76L83 1435 aa14.63□□□□□ -0.07
UBBP4-201ENST00000583708 ZCCHC11Q5TAX3 1644 aaKnown RBP14.62□□□□□ -0.07
UBBP4-201ENST00000583708 WDR7Q9Y4E6 1490 aa14.61□□□□□ -0.07
UBBP4-201ENST00000583708 PCF11O94913 1555 aaKnown RBP14.6□□□□□ -0.07
UBBP4-201ENST00000583708 ABCC10Q5T3U5 1492 aa14.59□□□□□ -0.07
UBBP4-201ENST00000583708 TROQ12816 1431 aaPredicted RBP14.58□□□□□ -0.08
UBBP4-201ENST00000583708 GLI2P10070 1586 aa14.56□□□□□ -0.08
UBBP4-201ENST00000583708 ARID3CA6NKF2 412 aa14.56□□□□□ -0.08
UBBP4-201ENST00000583708 FAM69CQ0P6D2 419 aa14.55□□□□□ -0.08
UBBP4-201ENST00000583708 MTUS2Q5JR59 1369 aa14.55□□□□□ -0.08
UBBP4-201ENST00000583708 TRHP20396 242 aaPredicted RBP14.54□□□□□ -0.08
UBBP4-201ENST00000583708 KCNH8Q96L42 1107 aa14.54□□□□□ -0.08
UBBP4-201ENST00000583708 CDK13Q14004 1512 aaKnown RBP14.54□□□□□ -0.08
UBBP4-201ENST00000583708 TIAM1Q13009 1591 aa14.51□□□□□ -0.09
UBBP4-201ENST00000583708 PHLDB1Q86UU1 1377 aa14.5□□□□□ -0.09
UBBP4-201ENST00000583708 DIP2BQ9P265 1576 aa14.49□□□□□ -0.09
UBBP4-201ENST00000583708 LRRC9Q6ZRR7 1453 aa14.49□□□□□ -0.09
UBBP4-201ENST00000583708 EHBP1L1Q8N3D4 1523 aa14.48□□□□□ -0.09
UBBP4-201ENST00000583708 CD109Q6YHK3 1445 aa14.48□□□□□ -0.09
UBBP4-201ENST00000583708 MAGI3Q5TCQ9 1506 aa14.46□□□□□ -0.09
UBBP4-201ENST00000583708 CFAP43Q8NDM7 1665 aa14.46□□□□□ -0.09
UBBP4-201ENST00000583708 LRRIQ1Q96JM4 1722 aa14.46□□□□□ -0.1
UBBP4-201ENST00000583708 TEX14Q8IWB6 1497 aa14.45□□□□□ -0.1
UBBP4-201ENST00000583708 KIF14Q15058 1648 aa14.45□□□□□ -0.1
UBBP4-201ENST00000583708 ABCA9Q8IUA7 1624 aa14.45□□□□□ -0.1
UBBP4-201ENST00000583708 ARAP3Q8WWN8 1544 aa14.45□□□□□ -0.1
UBBP4-201ENST00000583708 PLCH2O75038 1416 aa14.44□□□□□ -0.1
UBBP4-201ENST00000583708 EFCAB2Q5VUJ9 269 aa14.44□□□□□ -0.1
UBBP4-201ENST00000583708 KANK4Q5T7N3 995 aaPredicted RBP14.43□□□□□ -0.1
UBBP4-201ENST00000583708 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.42□□□□□ -0.1
UBBP4-201ENST00000583708 CCNB3Q8WWL7 1395 aa14.42□□□□□ -0.1
UBBP4-201ENST00000583708 MAP3K4Q9Y6R4 1608 aa14.41□□□□□ -0.1
UBBP4-201ENST00000583708 NEO1Q92859 1461 aa14.4□□□□□ -0.1
UBBP4-201ENST00000583708 KIF13AQ9H1H9 1805 aa14.4□□□□□ -0.1
UBBP4-201ENST00000583708 NCOA2Q15596 1464 aa14.39□□□□□ -0.11
UBBP4-201ENST00000583708 SUPT6HQ7KZ85 1726 aaKnown RBP14.39□□□□□ -0.11
UBBP4-201ENST00000583708 GPATCH8Q9UKJ3 1502 aaKnown RBP14.38□□□□□ -0.11
UBBP4-201ENST00000583708 CFDP1Q9UEE9 299 aaPredicted RBP14.38□□□□□ -0.11
UBBP4-201ENST00000583708 RSPH4AQ5TD94 716 aa14.37□□□□□ -0.11
UBBP4-201ENST00000583708 MIA2Q96PC5 1412 aa14.37□□□□□ -0.11
UBBP4-201ENST00000583708 PLEKHH2Q8IVE3 1493 aa14.36□□□□□ -0.11
UBBP4-201ENST00000583708 FANCAO15360 1455 aa14.35□□□□□ -0.11
UBBP4-201ENST00000583708 CFAP74Q9C0B2 1584 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms