RNA–Protein interactions for RNA: ENST00000580569.1

RFFL-207, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 5

Gene RFFL, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-207ENST00000580569 GRIN2BQ13224 1484 aa13.2□□□□□ -0.3
RFFL-207ENST00000580569 PBRM1Q86U86 1689 aa13.19□□□□□ -0.3
RFFL-207ENST00000580569 GAPVD1Q14C86 1478 aa13.19□□□□□ -0.3
RFFL-207ENST00000580569 FGD5Q6ZNL6 1462 aa13.19□□□□□ -0.3
RFFL-207ENST00000580569 AMER1Q5JTC6 1135 aaPredicted RBP13.17□□□□□ -0.3
RFFL-207ENST00000580569 CUX1P39880 1505 aa13.13□□□□□ -0.31
RFFL-207ENST00000580569 KIF13AQ9H1H9 1805 aa13.12□□□□□ -0.31
RFFL-207ENST00000580569 ABCA5Q8WWZ7 1642 aa13.1□□□□□ -0.31
RFFL-207ENST00000580569 ERCC6L2Q5T890 1561 aa13.07□□□□□ -0.32
RFFL-207ENST00000580569 SHROOM2Q13796 1616 aa13.06□□□□□ -0.32
RFFL-207ENST00000580569 MAPK8IP2Q13387 824 aaPredicted RBP13.06□□□□□ -0.32
RFFL-207ENST00000580569 ABCA10Q8WWZ4 1543 aa13.05□□□□□ -0.32
RFFL-207ENST00000580569 CEP170Q5SW79 1584 aa13.04□□□□□ -0.32
RFFL-207ENST00000580569 GRIN2AQ12879 1464 aa13.04□□□□□ -0.32
RFFL-207ENST00000580569 NUP160Q12769 1436 aa13.03□□□□□ -0.32
RFFL-207ENST00000580569 ADAMTS12P58397 1594 aa13□□□□□ -0.33
RFFL-207ENST00000580569 RNF216Q9NWF9 866 aaPredicted RBP12.98□□□□□ -0.33
RFFL-207ENST00000580569 MSH5O43196 834 aa12.93□□□□□ -0.34
RFFL-207ENST00000580569 FHAD1B1AJZ9 1412 aa12.92□□□□□ -0.34
RFFL-207ENST00000580569 ABCC10Q5T3U5 1492 aa12.91□□□□□ -0.34
RFFL-207ENST00000580569 MAPKBP1O60336 1514 aa12.91□□□□□ -0.34
RFFL-207ENST00000580569 ERICH3Q5RHP9 1530 aa12.91□□□□□ -0.34
RFFL-207ENST00000580569 LOC105371045A0A1W2PR82 267 aa12.9□□□□□ -0.34
RFFL-207ENST00000580569 BIVM-ERCC5R4GMW8 1640 aa12.9□□□□□ -0.34
RFFL-207ENST00000580569 DIP2BQ9P265 1576 aa12.9□□□□□ -0.35
RFFL-207ENST00000580569 WRNQ14191 1432 aaPredicted RBP eCLIP12.89□□□□□ -0.35
RFFL-207ENST00000580569 TOP2BQ02880 1626 aa12.88□□□□□ -0.35
RFFL-207ENST00000580569 PRG4Q92954 1404 aaPredicted RBP12.87□□□□□ -0.35
RFFL-207ENST00000580569 KDM6BO15054 1643 aa12.86□□□□□ -0.35
RFFL-207ENST00000580569 KDM4FA0A1W2PPD8 638 aa12.85□□□□□ -0.35
RFFL-207ENST00000580569 FAM69CQ0P6D2 419 aa12.84□□□□□ -0.35
RFFL-207ENST00000580569 TSPOAP1O95153 1857 aa12.84□□□□□ -0.35
RFFL-207ENST00000580569 ADCY10Q96PN6 1610 aa12.84□□□□□ -0.35
RFFL-207ENST00000580569 RUSC2Q8N2Y8 1516 aa12.83□□□□□ -0.35
RFFL-207ENST00000580569 FKBP8Q14318 412 aa12.83□□□□□ -0.36
RFFL-207ENST00000580569 JPH4Q96JJ6 628 aa12.83□□□□□ -0.36
RFFL-207ENST00000580569 SLC4A2P04920 1241 aa12.81□□□□□ -0.36
RFFL-207ENST00000580569 NPM1P06748 294 aaKnown RBP eCLIP12.8□□□□□ -0.36
RFFL-207ENST00000580569 ILDR1Q86SU0 546 aaPredicted RBP12.8□□□□□ -0.36
RFFL-207ENST00000580569 FAM9AQ8IZU1 332 aaPredicted RBP12.74□□□□□ -0.37
RFFL-207ENST00000580569 EEA1Q15075 1411 aa12.73□□□□□ -0.37
RFFL-207ENST00000580569 PPRC1Q5VV67 1664 aaKnown RBP12.73□□□□□ -0.37
RFFL-207ENST00000580569 ATXN8OSP0DMR3 200 aa12.71□□□□□ -0.37
RFFL-207ENST00000580569 KIAA0586Q9BVV6 1533 aa12.71□□□□□ -0.38
RFFL-207ENST00000580569 GLI2P10070 1586 aa12.7□□□□□ -0.38
RFFL-207ENST00000580569 HOXD11P31277 338 aaPredicted RBP12.7□□□□□ -0.38
RFFL-207ENST00000580569 MYCNP04198 464 aaPredicted RBP12.68□□□□□ -0.38
RFFL-207ENST00000580569 ADGRL1O94910 1474 aa12.67□□□□□ -0.38
RFFL-207ENST00000580569 CUL7Q14999 1698 aa12.67□□□□□ -0.38
RFFL-207ENST00000580569 KIF21BO75037 1637 aa12.65□□□□□ -0.38
RFFL-207ENST00000580569 HECW2Q9P2P5 1572 aa12.64□□□□□ -0.39
RFFL-207ENST00000580569 ABCC2Q92887 1545 aa12.64□□□□□ -0.39
RFFL-207ENST00000580569 DMRT2Q9Y5R5 561 aa12.64□□□□□ -0.39
RFFL-207ENST00000580569 PLB1Q6P1J6 1458 aa12.64□□□□□ -0.39
RFFL-207ENST00000580569 MAP3K4Q9Y6R4 1608 aa12.62□□□□□ -0.39
RFFL-207ENST00000580569 PTPRGP23470 1445 aa12.62□□□□□ -0.39
RFFL-207ENST00000580569 ASXL2Q76L83 1435 aa12.61□□□□□ -0.39
RFFL-207ENST00000580569 UHRF1BP1LA0JNW5 1464 aa12.6□□□□□ -0.39
RFFL-207ENST00000580569 IGF1RP08069 1367 aa12.59□□□□□ -0.39
RFFL-207ENST00000580569 COL17A1Q9UMD9 1497 aaPredicted RBP12.59□□□□□ -0.39
RFFL-207ENST00000580569 TNIKQ9UKE5 1360 aa12.58□□□□□ -0.4
RFFL-207ENST00000580569 CARMIL2Q6F5E8 1435 aa12.57□□□□□ -0.4
RFFL-207ENST00000580569 GOLGA3Q08378 1498 aa12.56□□□□□ -0.4
RFFL-207ENST00000580569 TEX14Q8IWB6 1497 aa12.56□□□□□ -0.4
RFFL-207ENST00000580569 EPRSP07814 1512 aaKnown RBP12.55□□□□□ -0.4
RFFL-207ENST00000580569 KDM5BQ9UGL1 1544 aa12.55□□□□□ -0.4
RFFL-207ENST00000580569 KIF27Q86VH2 1401 aa12.54□□□□□ -0.4
RFFL-207ENST00000580569 IQGAP2Q13576 1575 aa12.54□□□□□ -0.4
RFFL-207ENST00000580569 UACAQ9BZF9 1416 aa12.53□□□□□ -0.4
RFFL-207ENST00000580569 ZCCHC11Q5TAX3 1644 aaKnown RBP12.52□□□□□ -0.4
RFFL-207ENST00000580569 DISP1Q96F81 1524 aa12.5□□□□□ -0.41
RFFL-207ENST00000580569 PRXQ9BXM0 1461 aa12.49□□□□□ -0.41
RFFL-207ENST00000580569 CEP162Q5TB80 1403 aa12.49□□□□□ -0.41
RFFL-207ENST00000580569 CARMIL1Q5VZK9 1371 aa12.49□□□□□ -0.41
RFFL-207ENST00000580569 CFAP43Q8NDM7 1665 aa12.48□□□□□ -0.41
RFFL-207ENST00000580569 RAPGEF2Q9Y4G8 1499 aa12.46□□□□□ -0.41
RFFL-207ENST00000580569 FBXO41Q8TF61 875 aa12.46□□□□□ -0.41
RFFL-207ENST00000580569 UGGT2Q9NYU1 1516 aa12.46□□□□□ -0.42
RFFL-207ENST00000580569 PCGF6Q9BYE7 350 aa12.45□□□□□ -0.42
RFFL-207ENST00000580569 MAGI3Q5TCQ9 1506 aa12.45□□□□□ -0.42
RFFL-207ENST00000580569 TTBK1Q5TCY1 1321 aaPredicted RBP12.44□□□□□ -0.42
RFFL-207ENST00000580569 TRIM26Q12899 539 aaPredicted RBP12.44□□□□□ -0.42
RFFL-207ENST00000580569 WDR7Q9Y4E6 1490 aa12.44□□□□□ -0.42
RFFL-207ENST00000580569 KIAA0556O60303 1618 aa12.44□□□□□ -0.42
RFFL-207ENST00000580569 ADAMTSL3P82987 1691 aa12.39□□□□□ -0.43
RFFL-207ENST00000580569 CD109Q6YHK3 1445 aa12.38□□□□□ -0.43
RFFL-207ENST00000580569 UBTFP17480 764 aaKnown RBP12.38□□□□□ -0.43
RFFL-207ENST00000580569 ARAP3Q8WWN8 1544 aa12.37□□□□□ -0.43
RFFL-207ENST00000580569 CTTNBP2Q8WZ74 1663 aa12.37□□□□□ -0.43
RFFL-207ENST00000580569 ABCA8O94911 1581 aa12.35□□□□□ -0.43
RFFL-207ENST00000580569 ATF5Q9Y2D1 282 aaPredicted RBP12.35□□□□□ -0.43
RFFL-207ENST00000580569 CLIP1P30622 1438 aa12.34□□□□□ -0.43
RFFL-207ENST00000580569 PTPRMP28827 1452 aa12.34□□□□□ -0.43
RFFL-207ENST00000580569 BCORL1Q5H9F3 1711 aa12.32□□□□□ -0.44
RFFL-207ENST00000580569 HRCP23327 699 aa12.32□□□□□ -0.44
RFFL-207ENST00000580569 PHLDB1Q86UU1 1377 aa12.3□□□□□ -0.44
RFFL-207ENST00000580569 PCF11O94913 1555 aaKnown RBP12.3□□□□□ -0.44
RFFL-207ENST00000580569 ABCA9Q8IUA7 1624 aa12.29□□□□□ -0.44
RFFL-207ENST00000580569 VPS8Q8N3P4 1428 aa12.29□□□□□ -0.44
RFFL-207ENST00000580569 LMTK3Q96Q04 1460 aa12.27□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms