RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 RUSC2Q8N2Y8 1516 aa25.23■■□□□ 1.63
SMARCE1-216ENST00000580419 JPH4Q96JJ6 628 aa25.22■■□□□ 1.63
SMARCE1-216ENST00000580419 KIAA0586Q9BVV6 1533 aa25.19■■□□□ 1.62
SMARCE1-216ENST00000580419 PRG4Q92954 1404 aaPredicted RBP25.19■■□□□ 1.62
SMARCE1-216ENST00000580419 CARMIL1Q5VZK9 1371 aa25.09■■□□□ 1.61
SMARCE1-216ENST00000580419 MAPKBP1O60336 1514 aa24.95■■□□□ 1.58
SMARCE1-216ENST00000580419 IQGAP2Q13576 1575 aa24.92■■□□□ 1.58
SMARCE1-216ENST00000580419 RAPGEF2Q9Y4G8 1499 aa24.91■■□□□ 1.58
SMARCE1-216ENST00000580419 CARMIL2Q6F5E8 1435 aa24.91■■□□□ 1.58
SMARCE1-216ENST00000580419 KIF13AQ9H1H9 1805 aa24.91■■□□□ 1.58
SMARCE1-216ENST00000580419 ADCY10Q96PN6 1610 aa24.9■■□□□ 1.58
SMARCE1-216ENST00000580419 NPM1P06748 294 aaKnown RBP eCLIP24.88■■□□□ 1.57
SMARCE1-216ENST00000580419 ABCC10Q5T3U5 1492 aa24.86■■□□□ 1.57
SMARCE1-216ENST00000580419 TNIKQ9UKE5 1360 aa24.86■■□□□ 1.57
SMARCE1-216ENST00000580419 PTPRGP23470 1445 aa24.85■■□□□ 1.57
SMARCE1-216ENST00000580419 UGGT2Q9NYU1 1516 aa24.83■■□□□ 1.57
SMARCE1-216ENST00000580419 UHRF1BP1LA0JNW5 1464 aa24.78■■□□□ 1.56
SMARCE1-216ENST00000580419 DISP1Q96F81 1524 aa24.78■■□□□ 1.56
SMARCE1-216ENST00000580419 DIP2BQ9P265 1576 aa24.76■■□□□ 1.55
SMARCE1-216ENST00000580419 PRXQ9BXM0 1461 aa24.74■■□□□ 1.55
SMARCE1-216ENST00000580419 ABCC2Q92887 1545 aa24.74■■□□□ 1.55
SMARCE1-216ENST00000580419 CTTNBP2Q8WZ74 1663 aa24.7■■□□□ 1.54
SMARCE1-216ENST00000580419 FAM69CQ0P6D2 419 aa24.7■■□□□ 1.54
SMARCE1-216ENST00000580419 UACAQ9BZF9 1416 aa24.69■■□□□ 1.54
SMARCE1-216ENST00000580419 KIAA0556O60303 1618 aa24.68■■□□□ 1.54
SMARCE1-216ENST00000580419 PLB1Q6P1J6 1458 aa24.66■■□□□ 1.54
SMARCE1-216ENST00000580419 GOLGA3Q08378 1498 aa24.64■■□□□ 1.54
SMARCE1-216ENST00000580419 KDM5BQ9UGL1 1544 aa24.64■■□□□ 1.53
SMARCE1-216ENST00000580419 GLI2P10070 1586 aa24.62■■□□□ 1.53
SMARCE1-216ENST00000580419 EEA1Q15075 1411 aa24.59■■□□□ 1.53
SMARCE1-216ENST00000580419 ASXL2Q76L83 1435 aa24.58■■□□□ 1.53
SMARCE1-216ENST00000580419 CSRNP3Q8WYN3 585 aa24.52■■□□□ 1.52
SMARCE1-216ENST00000580419 ZCCHC11Q5TAX3 1644 aaKnown RBP24.49■■□□□ 1.51
SMARCE1-216ENST00000580419 ABCA8O94911 1581 aa24.47■■□□□ 1.51
SMARCE1-216ENST00000580419 TSPOAP1O95153 1857 aa24.47■■□□□ 1.51
SMARCE1-216ENST00000580419 KDM6BO15054 1643 aa24.46■■□□□ 1.51
SMARCE1-216ENST00000580419 TTBK1Q5TCY1 1321 aaPredicted RBP24.46■■□□□ 1.51
SMARCE1-216ENST00000580419 EPRSP07814 1512 aaKnown RBP24.45■■□□□ 1.51
SMARCE1-216ENST00000580419 PPRC1Q5VV67 1664 aaKnown RBP24.43■■□□□ 1.5
SMARCE1-216ENST00000580419 MAP3K4Q9Y6R4 1608 aa24.43■■□□□ 1.5
SMARCE1-216ENST00000580419 WDR7Q9Y4E6 1490 aa24.41■■□□□ 1.5
SMARCE1-216ENST00000580419 FAM9AQ8IZU1 332 aaPredicted RBP24.41■■□□□ 1.5
SMARCE1-216ENST00000580419 SAMD9Q5K651 1589 aa24.38■■□□□ 1.49
SMARCE1-216ENST00000580419 TEX14Q8IWB6 1497 aa24.38■■□□□ 1.49
SMARCE1-216ENST00000580419 KIF21BO75037 1637 aa24.31■■□□□ 1.48
SMARCE1-216ENST00000580419 CFAP43Q8NDM7 1665 aa24.3■■□□□ 1.48
SMARCE1-216ENST00000580419 MAGI3Q5TCQ9 1506 aa24.29■■□□□ 1.48
SMARCE1-216ENST00000580419 ATP10BO94823 1461 aa24.23■■□□□ 1.47
SMARCE1-216ENST00000580419 EFCAB5A4FU69 1503 aa24.21■■□□□ 1.47
SMARCE1-216ENST00000580419 CD109Q6YHK3 1445 aa24.21■■□□□ 1.47
SMARCE1-216ENST00000580419 RAPGEF6Q8TEU7 1601 aa24.21■■□□□ 1.47
SMARCE1-216ENST00000580419 COL17A1Q9UMD9 1497 aaPredicted RBP24.2■■□□□ 1.47
SMARCE1-216ENST00000580419 PHLDB1Q86UU1 1377 aa24.16■■□□□ 1.46
SMARCE1-216ENST00000580419 CHIC1Q5VXU3 224 aa24.14■■□□□ 1.45
SMARCE1-216ENST00000580419 ABCA9Q8IUA7 1624 aa24.13■■□□□ 1.45
SMARCE1-216ENST00000580419 P3H3Q8IVL6 736 aa24.13■■□□□ 1.45
SMARCE1-216ENST00000580419 NUP153P49790 1475 aaKnown RBP24.12■■□□□ 1.45
SMARCE1-216ENST00000580419 KDM4FA0A1W2PPD8 638 aa24.11■■□□□ 1.45
SMARCE1-216ENST00000580419 KCNH8Q96L42 1107 aa24.11■■□□□ 1.45
SMARCE1-216ENST00000580419 ARAP3Q8WWN8 1544 aa24.1■■□□□ 1.45
SMARCE1-216ENST00000580419 FHOD3Q2V2M9 1422 aa24.07■■□□□ 1.44
SMARCE1-216ENST00000580419 NEO1Q92859 1461 aa24.03■■□□□ 1.44
SMARCE1-216ENST00000580419 PLEKHD1A6NEE1 506 aa23.98■■□□□ 1.43
SMARCE1-216ENST00000580419 FMN1Q68DA7 1419 aa23.98■■□□□ 1.43
SMARCE1-216ENST00000580419 ADGRL1O94910 1474 aa23.96■■□□□ 1.43
SMARCE1-216ENST00000580419 UBTFP17480 764 aaKnown RBP23.94■■□□□ 1.42
SMARCE1-216ENST00000580419 ARID3CA6NKF2 412 aa23.93■■□□□ 1.42
SMARCE1-216ENST00000580419 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.92■■□□□ 1.42
SMARCE1-216ENST00000580419 HNRNPUL2Q1KMD3 747 aaKnown RBP23.92■■□□□ 1.42
SMARCE1-216ENST00000580419 ARHGAP35Q9NRY4 1499 aa23.92■■□□□ 1.42
SMARCE1-216ENST00000580419 CFAP74Q9C0B2 1584 aa23.88■■□□□ 1.41
SMARCE1-216ENST00000580419 RANGAP1P46060 587 aaPredicted RBP23.88■■□□□ 1.41
SMARCE1-216ENST00000580419 HECW1Q76N89 1606 aa23.88■■□□□ 1.41
SMARCE1-216ENST00000580419 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.86■■□□□ 1.41
SMARCE1-216ENST00000580419 CDK11AQ9UQ88 783 aaPredicted RBP23.82■■□□□ 1.4
SMARCE1-216ENST00000580419 CDK13Q14004 1512 aaKnown RBP23.8■■□□□ 1.4
SMARCE1-216ENST00000580419 FRMPD1Q5SYB0 1578 aa23.8■■□□□ 1.4
SMARCE1-216ENST00000580419 FANCAO15360 1455 aa23.8■■□□□ 1.4
SMARCE1-216ENST00000580419 AKNAQ7Z591 1439 aa23.79■■□□□ 1.4
SMARCE1-216ENST00000580419 TTC37Q6PGP7 1564 aa23.78■■□□□ 1.4
SMARCE1-216ENST00000580419 RICTORQ6R327 1708 aa23.78■■□□□ 1.4
SMARCE1-216ENST00000580419 DENND4BO75064 1496 aaPredicted RBP23.77■■□□□ 1.4
SMARCE1-216ENST00000580419 PLCH2O75038 1416 aa23.76■■□□□ 1.39
SMARCE1-216ENST00000580419 RAPGEF3O95398 923 aa23.75■■□□□ 1.39
SMARCE1-216ENST00000580419 ZMYM4Q5VZL5 1548 aa23.74■■□□□ 1.39
SMARCE1-216ENST00000580419 MAGI2Q86UL8 1455 aa23.74■■□□□ 1.39
SMARCE1-216ENST00000580419 TROQ12816 1431 aaPredicted RBP23.72■■□□□ 1.39
SMARCE1-216ENST00000580419 CASKIN1Q8WXD9 1431 aa23.71■■□□□ 1.39
SMARCE1-216ENST00000580419 ADAMTSL3P82987 1691 aa23.7■■□□□ 1.39
SMARCE1-216ENST00000580419 ARHGEF40Q8TER5 1519 aa23.7■■□□□ 1.38
SMARCE1-216ENST00000580419 CCDC18Q5T9S5 1454 aa23.7■■□□□ 1.38
SMARCE1-216ENST00000580419 MYO5CQ9NQX4 1742 aa23.7■■□□□ 1.38
SMARCE1-216ENST00000580419 CLIP1P30622 1438 aa23.68■■□□□ 1.38
SMARCE1-216ENST00000580419 KIF14Q15058 1648 aa23.68■■□□□ 1.38
SMARCE1-216ENST00000580419 LRRIQ1Q96JM4 1722 aa23.66■■□□□ 1.38
SMARCE1-216ENST00000580419 EFCAB2Q5VUJ9 269 aa23.65■■□□□ 1.38
SMARCE1-216ENST00000580419 BCORL1Q5H9F3 1711 aa23.64■■□□□ 1.38
SMARCE1-216ENST00000580419 FYCO1Q9BQS8 1478 aa23.64■■□□□ 1.38
SMARCE1-216ENST00000580419 POGZQ7Z3K3 1410 aa23.63■■□□□ 1.37
SMARCE1-216ENST00000580419 EHMT2Q96KQ7 1210 aa23.62■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 7 ms