RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 CLIP1P30622 1438 aa40.18■■■■■ 4.02
SHMT1-207ENST00000580002 CHD1O14646 1710 aa40.17■■■■■ 4.02
SHMT1-207ENST00000580002 CEP170Q5SW79 1584 aa40.16■■■■■ 4.02
SHMT1-207ENST00000580002 CTTNBP2Q8WZ74 1663 aa40.16■■■■■ 4.02
SHMT1-207ENST00000580002 NUP160Q12769 1436 aa40.1■■■■■ 4.01
SHMT1-207ENST00000580002 KIAA0586Q9BVV6 1533 aa40.04■■■■■ 4
SHMT1-207ENST00000580002 P3H3Q8IVL6 736 aa40.02■■■■■ 4
SHMT1-207ENST00000580002 ARHGAP35Q9NRY4 1499 aa40.01■■■■□ 3.99
SHMT1-207ENST00000580002 IQGAP2Q13576 1575 aa39.99■■■■□ 3.99
SHMT1-207ENST00000580002 ARAP1Q96P48 1450 aa39.91■■■■□ 3.98
SHMT1-207ENST00000580002 JPH4Q96JJ6 628 aa39.87■■■■□ 3.97
SHMT1-207ENST00000580002 FHOD3Q2V2M9 1422 aa39.82■■■■□ 3.96
SHMT1-207ENST00000580002 UGGT2Q9NYU1 1516 aa39.8■■■■□ 3.96
SHMT1-207ENST00000580002 SAMD9Q5K651 1589 aa39.77■■■■□ 3.96
SHMT1-207ENST00000580002 EFCAB5A4FU69 1503 aa39.74■■■■□ 3.95
SHMT1-207ENST00000580002 DISP1Q96F81 1524 aa39.74■■■■□ 3.95
SHMT1-207ENST00000580002 CLASP1Q7Z460 1538 aa39.72■■■■□ 3.95
SHMT1-207ENST00000580002 OSCARQ8IYS5 282 aa39.72■■■■□ 3.95
SHMT1-207ENST00000580002 VPS8Q8N3P4 1428 aa39.69■■■■□ 3.94
SHMT1-207ENST00000580002 TTBK1Q5TCY1 1321 aaPredicted RBP39.65■■■■□ 3.94
SHMT1-207ENST00000580002 PRG4Q92954 1404 aaPredicted RBP39.63■■■■□ 3.93
SHMT1-207ENST00000580002 KIAA0556O60303 1618 aa39.62■■■■□ 3.93
SHMT1-207ENST00000580002 SHROOM2Q13796 1616 aa39.57■■■■□ 3.93
SHMT1-207ENST00000580002 ERCC6L2Q5T890 1561 aa39.55■■■■□ 3.92
SHMT1-207ENST00000580002 PPARGC1BQ86YN6 1023 aaKnown RBP39.54■■■■□ 3.92
SHMT1-207ENST00000580002 CARMIL2Q6F5E8 1435 aa39.51■■■■□ 3.92
SHMT1-207ENST00000580002 ATP1B4Q9UN42 357 aaPredicted RBP39.44■■■■□ 3.9
SHMT1-207ENST00000580002 FMN1Q68DA7 1419 aa39.43■■■■□ 3.9
SHMT1-207ENST00000580002 PCF11O94913 1555 aaKnown RBP39.4■■■■□ 3.9
SHMT1-207ENST00000580002 CASKIN1Q8WXD9 1431 aa39.34■■■■□ 3.89
SHMT1-207ENST00000580002 PTPRGP23470 1445 aa39.29■■■■□ 3.88
SHMT1-207ENST00000580002 PLB1Q6P1J6 1458 aa39.27■■■■□ 3.88
SHMT1-207ENST00000580002 ARID3CA6NKF2 412 aa39.26■■■■□ 3.88
SHMT1-207ENST00000580002 FYCO1Q9BQS8 1478 aa39.25■■■■□ 3.87
SHMT1-207ENST00000580002 APLP2Q06481 763 aa39.25■■■■□ 3.87
SHMT1-207ENST00000580002 KANK4Q5T7N3 995 aaPredicted RBP39.22■■■■□ 3.87
SHMT1-207ENST00000580002 LRRIQ1Q96JM4 1722 aa39.15■■■■□ 3.86
SHMT1-207ENST00000580002 RAPGEF6Q8TEU7 1601 aa39.14■■■■□ 3.86
SHMT1-207ENST00000580002 NUP153P49790 1475 aaKnown RBP39.11■■■■□ 3.85
SHMT1-207ENST00000580002 ABCA8O94911 1581 aa39.11■■■■□ 3.85
SHMT1-207ENST00000580002 TIAM1Q13009 1591 aa39.08■■■■□ 3.85
SHMT1-207ENST00000580002 HECW1Q76N89 1606 aa39.07■■■■□ 3.84
SHMT1-207ENST00000580002 CDK13Q14004 1512 aaKnown RBP39.06■■■■□ 3.84
SHMT1-207ENST00000580002 EPRSP07814 1512 aaKnown RBP39.05■■■■□ 3.84
SHMT1-207ENST00000580002 UACAQ9BZF9 1416 aa39.04■■■■□ 3.84
SHMT1-207ENST00000580002 ARHGEF11O15085 1522 aa39.03■■■■□ 3.84
SHMT1-207ENST00000580002 MAP3K1Q13233 1512 aa39■■■■□ 3.83
SHMT1-207ENST00000580002 CFAP43Q8NDM7 1665 aa38.97■■■■□ 3.83
SHMT1-207ENST00000580002 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP38.95■■■■□ 3.83
SHMT1-207ENST00000580002 HNRNPUL2Q1KMD3 747 aaKnown RBP38.95■■■■□ 3.83
SHMT1-207ENST00000580002 LRRC9Q6ZRR7 1453 aa38.94■■■■□ 3.82
SHMT1-207ENST00000580002 CCDC18Q5T9S5 1454 aa38.92■■■■□ 3.82
SHMT1-207ENST00000580002 ATP10BO94823 1461 aa38.91■■■■□ 3.82
SHMT1-207ENST00000580002 MAGI3Q5TCQ9 1506 aa38.9■■■■□ 3.82
SHMT1-207ENST00000580002 RIMBP3CA6NJZ7 1639 aa38.89■■■■□ 3.82
SHMT1-207ENST00000580002 RIMBP3BA6NNM3 1639 aa38.89■■■■□ 3.82
SHMT1-207ENST00000580002 RIMBP3Q9UFD9 1639 aa38.89■■■■□ 3.82
SHMT1-207ENST00000580002 ABCC2Q92887 1545 aa38.88■■■■□ 3.81
SHMT1-207ENST00000580002 MTUS2Q5JR59 1369 aa38.83■■■■□ 3.81
SHMT1-207ENST00000580002 CYB5RLQ6IPT4 315 aa38.81■■■■□ 3.8
SHMT1-207ENST00000580002 UHRF1BP1LA0JNW5 1464 aa38.8■■■■□ 3.8
SHMT1-207ENST00000580002 ADCY10Q96PN6 1610 aa38.8■■■■□ 3.8
SHMT1-207ENST00000580002 TRIM26Q12899 539 aaPredicted RBP38.71■■■■□ 3.79
SHMT1-207ENST00000580002 KDM5BQ9UGL1 1544 aa38.68■■■■□ 3.78
SHMT1-207ENST00000580002 CDK11AQ9UQ88 783 aaPredicted RBP38.68■■■■□ 3.78
SHMT1-207ENST00000580002 EHBP1L1Q8N3D4 1523 aa38.67■■■■□ 3.78
SHMT1-207ENST00000580002 PLEKHD1A6NEE1 506 aa38.67■■■■□ 3.78
SHMT1-207ENST00000580002 PCGF6Q9BYE7 350 aa38.66■■■■□ 3.78
SHMT1-207ENST00000580002 PHLDB1Q86UU1 1377 aa38.66■■■■□ 3.78
SHMT1-207ENST00000580002 ZCCHC11Q5TAX3 1644 aaKnown RBP38.65■■■■□ 3.78
SHMT1-207ENST00000580002 TROQ12816 1431 aaPredicted RBP38.62■■■■□ 3.77
SHMT1-207ENST00000580002 NCOA2Q15596 1464 aa38.6■■■■□ 3.77
SHMT1-207ENST00000580002 SUPT6HQ7KZ85 1726 aaKnown RBP38.53■■■■□ 3.76
SHMT1-207ENST00000580002 KIF14Q15058 1648 aa38.52■■■■□ 3.76
SHMT1-207ENST00000580002 KCNH8Q96L42 1107 aa38.5■■■■□ 3.75
SHMT1-207ENST00000580002 NPM1P06748 294 aaKnown RBP eCLIP38.48■■■■□ 3.75
SHMT1-207ENST00000580002 ASXL2Q76L83 1435 aa38.4■■■■□ 3.74
SHMT1-207ENST00000580002 RRBP1Q9P2E9 1410 aaKnown RBP38.39■■■■□ 3.74
SHMT1-207ENST00000580002 DNAJC5Q9H3Z4 198 aa38.37■■■■□ 3.73
SHMT1-207ENST00000580002 MYOM3Q5VTT5 1437 aa38.37■■■■□ 3.73
SHMT1-207ENST00000580002 ABCC10Q5T3U5 1492 aa38.36■■■■□ 3.73
SHMT1-207ENST00000580002 CCNB3Q8WWL7 1395 aa38.35■■■■□ 3.73
SHMT1-207ENST00000580002 WDR7Q9Y4E6 1490 aa38.34■■■■□ 3.73
SHMT1-207ENST00000580002 FGD6Q6ZV73 1430 aa38.32■■■■□ 3.73
SHMT1-207ENST00000580002 FAM50AQ14320 339 aaKnown RBP38.3■■■■□ 3.72
SHMT1-207ENST00000580002 GPATCH8Q9UKJ3 1502 aaKnown RBP38.29■■■■□ 3.72
SHMT1-207ENST00000580002 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP38.28■■■■□ 3.72
SHMT1-207ENST00000580002 TTC37Q6PGP7 1564 aa38.24■■■■□ 3.71
SHMT1-207ENST00000580002 ZNF644Q9H582 1327 aaPredicted RBP38.23■■■■□ 3.71
SHMT1-207ENST00000580002 ITGAEP38570 1179 aa38.21■■■■□ 3.71
SHMT1-207ENST00000580002 CFDP1Q9UEE9 299 aaPredicted RBP38.19■■■■□ 3.7
SHMT1-207ENST00000580002 ZNF777Q9ULD5 760 aaPredicted RBP38.16■■■■□ 3.7
SHMT1-207ENST00000580002 CDC42BPAQ5VT25 1732 aa38.16■■■■□ 3.7
SHMT1-207ENST00000580002 MIA2Q96PC5 1412 aa38.15■■■■□ 3.7
SHMT1-207ENST00000580002 PTPN23Q9H3S7 1636 aa38.15■■■■□ 3.7
SHMT1-207ENST00000580002 MAPKBP1O60336 1514 aa38.14■■■■□ 3.7
SHMT1-207ENST00000580002 TCOF1Q13428 1488 aaKnown RBP38.09■■■■□ 3.69
SHMT1-207ENST00000580002 ITSN2Q9NZM3 1697 aa38.07■■■■□ 3.68
SHMT1-207ENST00000580002 CDC42BPBQ9Y5S2 1711 aa38.06■■■■□ 3.68
SHMT1-207ENST00000580002 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP38.05■■■■□ 3.68
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms