RNA–Protein interactions for RNA: ENST00000576033.5

CCDC40-215, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 466 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-215ENST00000576033 SHROOM2Q13796 1616 aa13.35□□□□□ -0.27
CCDC40-215ENST00000576033 CTTNBP2Q8WZ74 1663 aa13.32□□□□□ -0.28
CCDC40-215ENST00000576033 PRXQ9BXM0 1461 aa13.31□□□□□ -0.28
CCDC40-215ENST00000576033 RAPGEF2Q9Y4G8 1499 aa13.31□□□□□ -0.28
CCDC40-215ENST00000576033 ARAP1Q96P48 1450 aa13.3□□□□□ -0.28
CCDC40-215ENST00000576033 EHMT2Q96KQ7 1210 aa13.27□□□□□ -0.29
CCDC40-215ENST00000576033 IQGAP2Q13576 1575 aa13.27□□□□□ -0.29
CCDC40-215ENST00000576033 KIF21BO75037 1637 aa13.25□□□□□ -0.29
CCDC40-215ENST00000576033 KIAA0586Q9BVV6 1533 aa13.24□□□□□ -0.29
CCDC40-215ENST00000576033 EEA1Q15075 1411 aa13.24□□□□□ -0.29
CCDC40-215ENST00000576033 CSRNP3Q8WYN3 585 aa13.23□□□□□ -0.29
CCDC40-215ENST00000576033 PRG4Q92954 1404 aaPredicted RBP13.22□□□□□ -0.29
CCDC40-215ENST00000576033 DISP1Q96F81 1524 aa13.18□□□□□ -0.3
CCDC40-215ENST00000576033 KIAA0556O60303 1618 aa13.17□□□□□ -0.3
CCDC40-215ENST00000576033 JPH4Q96JJ6 628 aa13.17□□□□□ -0.3
CCDC40-215ENST00000576033 UGGT2Q9NYU1 1516 aa13.17□□□□□ -0.3
CCDC40-215ENST00000576033 CYB5RLQ6IPT4 315 aa13.16□□□□□ -0.3
CCDC40-215ENST00000576033 GOLGA3Q08378 1498 aa13.14□□□□□ -0.31
CCDC40-215ENST00000576033 TTBK1Q5TCY1 1321 aaPredicted RBP13.13□□□□□ -0.31
CCDC40-215ENST00000576033 RANGAP1P46060 587 aaPredicted RBP13.12□□□□□ -0.31
CCDC40-215ENST00000576033 ADCY10Q96PN6 1610 aa13.12□□□□□ -0.31
CCDC40-215ENST00000576033 SAMD9Q5K651 1589 aa13.11□□□□□ -0.31
CCDC40-215ENST00000576033 P3H3Q8IVL6 736 aa13.05□□□□□ -0.32
CCDC40-215ENST00000576033 FHOD3Q2V2M9 1422 aa13.05□□□□□ -0.32
CCDC40-215ENST00000576033 CARMIL2Q6F5E8 1435 aa13.05□□□□□ -0.32
CCDC40-215ENST00000576033 TNIKQ9UKE5 1360 aa13.04□□□□□ -0.32
CCDC40-215ENST00000576033 UBTFP17480 764 aaKnown RBP13.03□□□□□ -0.32
CCDC40-215ENST00000576033 PLB1Q6P1J6 1458 aa13.03□□□□□ -0.32
CCDC40-215ENST00000576033 PTPRGP23470 1445 aa13.02□□□□□ -0.33
CCDC40-215ENST00000576033 ARHGAP35Q9NRY4 1499 aa13.01□□□□□ -0.33
CCDC40-215ENST00000576033 ABCA8O94911 1581 aa13□□□□□ -0.33
CCDC40-215ENST00000576033 ZCCHC11Q5TAX3 1644 aaKnown RBP12.99□□□□□ -0.33
CCDC40-215ENST00000576033 EFCAB5A4FU69 1503 aa12.99□□□□□ -0.33
CCDC40-215ENST00000576033 ABCC2Q92887 1545 aa12.99□□□□□ -0.33
CCDC40-215ENST00000576033 LOC105371045A0A1W2PR82 267 aa12.99□□□□□ -0.33
CCDC40-215ENST00000576033 RAPGEF6Q8TEU7 1601 aa12.96□□□□□ -0.33
CCDC40-215ENST00000576033 LRRIQ1Q96JM4 1722 aa12.96□□□□□ -0.34
CCDC40-215ENST00000576033 UACAQ9BZF9 1416 aa12.96□□□□□ -0.34
CCDC40-215ENST00000576033 KIF13AQ9H1H9 1805 aa12.95□□□□□ -0.34
CCDC40-215ENST00000576033 ARID3CA6NKF2 412 aa12.94□□□□□ -0.34
CCDC40-215ENST00000576033 PCF11O94913 1555 aaKnown RBP12.94□□□□□ -0.34
CCDC40-215ENST00000576033 UHRF1BP1LA0JNW5 1464 aa12.93□□□□□ -0.34
CCDC40-215ENST00000576033 MAPKBP1O60336 1514 aa12.91□□□□□ -0.34
CCDC40-215ENST00000576033 NUP153P49790 1475 aaKnown RBP12.91□□□□□ -0.34
CCDC40-215ENST00000576033 DIP2BQ9P265 1576 aa12.9□□□□□ -0.34
CCDC40-215ENST00000576033 CLIP1P30622 1438 aa12.9□□□□□ -0.34
CCDC40-215ENST00000576033 CEP162Q5TB80 1403 aa12.9□□□□□ -0.34
CCDC40-215ENST00000576033 KDM5BQ9UGL1 1544 aa12.9□□□□□ -0.34
CCDC40-215ENST00000576033 CDK13Q14004 1512 aaKnown RBP12.89□□□□□ -0.35
CCDC40-215ENST00000576033 ASXL2Q76L83 1435 aa12.87□□□□□ -0.35
CCDC40-215ENST00000576033 ATP10BO94823 1461 aa12.85□□□□□ -0.35
CCDC40-215ENST00000576033 HECW1Q76N89 1606 aa12.85□□□□□ -0.35
CCDC40-215ENST00000576033 TRHP20396 242 aaPredicted RBP12.85□□□□□ -0.35
CCDC40-215ENST00000576033 TSPOAP1O95153 1857 aa12.85□□□□□ -0.35
CCDC40-215ENST00000576033 ABCC10Q5T3U5 1492 aa12.83□□□□□ -0.36
CCDC40-215ENST00000576033 PPRC1Q5VV67 1664 aaKnown RBP12.82□□□□□ -0.36
CCDC40-215ENST00000576033 WDR7Q9Y4E6 1490 aa12.81□□□□□ -0.36
CCDC40-215ENST00000576033 FMN1Q68DA7 1419 aa12.8□□□□□ -0.36
CCDC40-215ENST00000576033 EPRSP07814 1512 aaKnown RBP12.8□□□□□ -0.36
CCDC40-215ENST00000576033 NPM1P06748 294 aaKnown RBP eCLIP12.79□□□□□ -0.36
CCDC40-215ENST00000576033 MAGI3Q5TCQ9 1506 aa12.78□□□□□ -0.36
CCDC40-215ENST00000576033 MAP3K4Q9Y6R4 1608 aa12.78□□□□□ -0.36
CCDC40-215ENST00000576033 ATP1B4Q9UN42 357 aaPredicted RBP12.78□□□□□ -0.36
CCDC40-215ENST00000576033 KIF14Q15058 1648 aa12.77□□□□□ -0.36
CCDC40-215ENST00000576033 CASKIN1Q8WXD9 1431 aa12.77□□□□□ -0.37
CCDC40-215ENST00000576033 FYCO1Q9BQS8 1478 aa12.77□□□□□ -0.37
CCDC40-215ENST00000576033 FAM69CQ0P6D2 419 aa12.76□□□□□ -0.37
CCDC40-215ENST00000576033 GLI2P10070 1586 aa12.76□□□□□ -0.37
CCDC40-215ENST00000576033 TTC37Q6PGP7 1564 aa12.76□□□□□ -0.37
CCDC40-215ENST00000576033 CFAP43Q8NDM7 1665 aa12.74□□□□□ -0.37
CCDC40-215ENST00000576033 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.74□□□□□ -0.37
CCDC40-215ENST00000576033 HNRNPUL2Q1KMD3 747 aaKnown RBP12.74□□□□□ -0.37
CCDC40-215ENST00000576033 ABCA9Q8IUA7 1624 aa12.73□□□□□ -0.37
CCDC40-215ENST00000576033 KCNH8Q96L42 1107 aa12.72□□□□□ -0.37
CCDC40-215ENST00000576033 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.71□□□□□ -0.38
CCDC40-215ENST00000576033 VPS8Q8N3P4 1428 aa12.71□□□□□ -0.38
CCDC40-215ENST00000576033 CCDC18Q5T9S5 1454 aa12.69□□□□□ -0.38
CCDC40-215ENST00000576033 TIAM1Q13009 1591 aa12.67□□□□□ -0.38
CCDC40-215ENST00000576033 MYO5CQ9NQX4 1742 aa12.65□□□□□ -0.38
CCDC40-215ENST00000576033 TROQ12816 1431 aaPredicted RBP12.65□□□□□ -0.38
CCDC40-215ENST00000576033 KDM6BO15054 1643 aa12.65□□□□□ -0.38
CCDC40-215ENST00000576033 CD109Q6YHK3 1445 aa12.64□□□□□ -0.39
CCDC40-215ENST00000576033 CDC42BPAQ5VT25 1732 aa12.64□□□□□ -0.39
CCDC40-215ENST00000576033 COL17A1Q9UMD9 1497 aaPredicted RBP12.63□□□□□ -0.39
CCDC40-215ENST00000576033 CDC42BPBQ9Y5S2 1711 aa12.62□□□□□ -0.39
CCDC40-215ENST00000576033 PREX2Q70Z35 1606 aa12.62□□□□□ -0.39
CCDC40-215ENST00000576033 EHBP1L1Q8N3D4 1523 aa12.62□□□□□ -0.39
CCDC40-215ENST00000576033 PLEKHD1A6NEE1 506 aa12.61□□□□□ -0.39
CCDC40-215ENST00000576033 FRMPD1Q5SYB0 1578 aa12.6□□□□□ -0.39
CCDC40-215ENST00000576033 TEX14Q8IWB6 1497 aa12.58□□□□□ -0.4
CCDC40-215ENST00000576033 LRRC9Q6ZRR7 1453 aa12.57□□□□□ -0.4
CCDC40-215ENST00000576033 SUPT6HQ7KZ85 1726 aaKnown RBP12.57□□□□□ -0.4
CCDC40-215ENST00000576033 KANK4Q5T7N3 995 aaPredicted RBP12.56□□□□□ -0.4
CCDC40-215ENST00000576033 FANCAO15360 1455 aa12.56□□□□□ -0.4
CCDC40-215ENST00000576033 RICTORQ6R327 1708 aa12.56□□□□□ -0.4
CCDC40-215ENST00000576033 ARHGAP5Q13017 1502 aa12.56□□□□□ -0.4
CCDC40-215ENST00000576033 CFAP74Q9C0B2 1584 aa12.56□□□□□ -0.4
CCDC40-215ENST00000576033 MTUS2Q5JR59 1369 aa12.56□□□□□ -0.4
CCDC40-215ENST00000576033 SAMD9LQ8IVG5 1584 aa12.55□□□□□ -0.4
CCDC40-215ENST00000576033 PLCH2O75038 1416 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms