RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 PRXQ9BXM0 1461 aa14.17□□□□□ -0.14
NUP88-211ENST00000575976 RAPGEF2Q9Y4G8 1499 aa14.17□□□□□ -0.14
NUP88-211ENST00000575976 ARAP1Q96P48 1450 aa14.14□□□□□ -0.15
NUP88-211ENST00000575976 NUP160Q12769 1436 aa14.13□□□□□ -0.15
NUP88-211ENST00000575976 CEP170Q5SW79 1584 aa14.12□□□□□ -0.15
NUP88-211ENST00000575976 EHMT2Q96KQ7 1210 aa14.08□□□□□ -0.16
NUP88-211ENST00000575976 CLASP1Q7Z460 1538 aa14.08□□□□□ -0.16
NUP88-211ENST00000575976 KIF21BO75037 1637 aa14.07□□□□□ -0.16
NUP88-211ENST00000575976 KIAA0586Q9BVV6 1533 aa14.05□□□□□ -0.16
NUP88-211ENST00000575976 JPH4Q96JJ6 628 aa14.03□□□□□ -0.16
NUP88-211ENST00000575976 GOLGA3Q08378 1498 aa14.03□□□□□ -0.16
NUP88-211ENST00000575976 UBTFP17480 764 aaKnown RBP14.01□□□□□ -0.17
NUP88-211ENST00000575976 IQGAP2Q13576 1575 aa13.98□□□□□ -0.17
NUP88-211ENST00000575976 ILDR1Q86SU0 546 aaPredicted RBP13.97□□□□□ -0.17
NUP88-211ENST00000575976 CTTNBP2Q8WZ74 1663 aa13.97□□□□□ -0.17
NUP88-211ENST00000575976 SHROOM2Q13796 1616 aa13.97□□□□□ -0.17
NUP88-211ENST00000575976 LOC105371045A0A1W2PR82 267 aa13.96□□□□□ -0.17
NUP88-211ENST00000575976 PRG4Q92954 1404 aaPredicted RBP13.96□□□□□ -0.18
NUP88-211ENST00000575976 ERCC6L2Q5T890 1561 aa13.94□□□□□ -0.18
NUP88-211ENST00000575976 RANGAP1P46060 587 aaPredicted RBP13.93□□□□□ -0.18
NUP88-211ENST00000575976 UGGT2Q9NYU1 1516 aa13.93□□□□□ -0.18
NUP88-211ENST00000575976 TNIKQ9UKE5 1360 aa13.91□□□□□ -0.18
NUP88-211ENST00000575976 DISP1Q96F81 1524 aa13.9□□□□□ -0.19
NUP88-211ENST00000575976 CARMIL2Q6F5E8 1435 aa13.89□□□□□ -0.19
NUP88-211ENST00000575976 P3H3Q8IVL6 736 aa13.88□□□□□ -0.19
NUP88-211ENST00000575976 TTBK1Q5TCY1 1321 aaPredicted RBP13.86□□□□□ -0.19
NUP88-211ENST00000575976 KIAA0556O60303 1618 aa13.85□□□□□ -0.19
NUP88-211ENST00000575976 SAMD9Q5K651 1589 aa13.83□□□□□ -0.2
NUP88-211ENST00000575976 PTPRGP23470 1445 aa13.82□□□□□ -0.2
NUP88-211ENST00000575976 ARHGAP35Q9NRY4 1499 aa13.8□□□□□ -0.2
NUP88-211ENST00000575976 FHOD3Q2V2M9 1422 aa13.8□□□□□ -0.2
NUP88-211ENST00000575976 EFCAB5A4FU69 1503 aa13.8□□□□□ -0.2
NUP88-211ENST00000575976 CLIP1P30622 1438 aa13.79□□□□□ -0.2
NUP88-211ENST00000575976 CEP162Q5TB80 1403 aa13.77□□□□□ -0.21
NUP88-211ENST00000575976 UACAQ9BZF9 1416 aa13.73□□□□□ -0.21
NUP88-211ENST00000575976 PLB1Q6P1J6 1458 aa13.73□□□□□ -0.21
NUP88-211ENST00000575976 ABCA8O94911 1581 aa13.7□□□□□ -0.22
NUP88-211ENST00000575976 UHRF1BP1LA0JNW5 1464 aa13.69□□□□□ -0.22
NUP88-211ENST00000575976 ADCY10Q96PN6 1610 aa13.68□□□□□ -0.22
NUP88-211ENST00000575976 FMN1Q68DA7 1419 aa13.68□□□□□ -0.22
NUP88-211ENST00000575976 ABCC2Q92887 1545 aa13.68□□□□□ -0.22
NUP88-211ENST00000575976 KDM4FA0A1W2PPD8 638 aa13.66□□□□□ -0.22
NUP88-211ENST00000575976 NPM1P06748 294 aaKnown RBP eCLIP13.66□□□□□ -0.22
NUP88-211ENST00000575976 RAPGEF6Q8TEU7 1601 aa13.65□□□□□ -0.22
NUP88-211ENST00000575976 ARID3CA6NKF2 412 aa13.65□□□□□ -0.22
NUP88-211ENST00000575976 ATP1B4Q9UN42 357 aaPredicted RBP13.65□□□□□ -0.22
NUP88-211ENST00000575976 KIF13AQ9H1H9 1805 aa13.64□□□□□ -0.23
NUP88-211ENST00000575976 KDM5BQ9UGL1 1544 aa13.63□□□□□ -0.23
NUP88-211ENST00000575976 NUP153P49790 1475 aaKnown RBP13.62□□□□□ -0.23
NUP88-211ENST00000575976 ATP10BO94823 1461 aa13.61□□□□□ -0.23
NUP88-211ENST00000575976 CASKIN1Q8WXD9 1431 aa13.61□□□□□ -0.23
NUP88-211ENST00000575976 PCF11O94913 1555 aaKnown RBP13.6□□□□□ -0.23
NUP88-211ENST00000575976 VPS8Q8N3P4 1428 aa13.59□□□□□ -0.23
NUP88-211ENST00000575976 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.59□□□□□ -0.23
NUP88-211ENST00000575976 HNRNPUL2Q1KMD3 747 aaKnown RBP13.59□□□□□ -0.23
NUP88-211ENST00000575976 ZCCHC11Q5TAX3 1644 aaKnown RBP13.59□□□□□ -0.23
NUP88-211ENST00000575976 HECW1Q76N89 1606 aa13.57□□□□□ -0.24
NUP88-211ENST00000575976 FYCO1Q9BQS8 1478 aa13.57□□□□□ -0.24
NUP88-211ENST00000575976 FAM69CQ0P6D2 419 aa13.57□□□□□ -0.24
NUP88-211ENST00000575976 EPRSP07814 1512 aaKnown RBP13.56□□□□□ -0.24
NUP88-211ENST00000575976 CDK13Q14004 1512 aaKnown RBP13.56□□□□□ -0.24
NUP88-211ENST00000575976 ASXL2Q76L83 1435 aa13.56□□□□□ -0.24
NUP88-211ENST00000575976 MAPKBP1O60336 1514 aa13.55□□□□□ -0.24
NUP88-211ENST00000575976 ABCC10Q5T3U5 1492 aa13.53□□□□□ -0.24
NUP88-211ENST00000575976 LRRIQ1Q96JM4 1722 aa13.53□□□□□ -0.24
NUP88-211ENST00000575976 PLEKHD1A6NEE1 506 aa13.52□□□□□ -0.25
NUP88-211ENST00000575976 KDM6BO15054 1643 aa13.51□□□□□ -0.25
NUP88-211ENST00000575976 CCDC18Q5T9S5 1454 aa13.51□□□□□ -0.25
NUP88-211ENST00000575976 WDR7Q9Y4E6 1490 aa13.51□□□□□ -0.25
NUP88-211ENST00000575976 KCNH8Q96L42 1107 aa13.5□□□□□ -0.25
NUP88-211ENST00000575976 CDK11AQ9UQ88 783 aaPredicted RBP13.5□□□□□ -0.25
NUP88-211ENST00000575976 TROQ12816 1431 aaPredicted RBP13.46□□□□□ -0.26
NUP88-211ENST00000575976 DIP2BQ9P265 1576 aa13.45□□□□□ -0.26
NUP88-211ENST00000575976 MAGI3Q5TCQ9 1506 aa13.45□□□□□ -0.26
NUP88-211ENST00000575976 APLP2Q06481 763 aa13.45□□□□□ -0.26
NUP88-211ENST00000575976 TIAM1Q13009 1591 aa13.44□□□□□ -0.26
NUP88-211ENST00000575976 KANK4Q5T7N3 995 aaPredicted RBP13.43□□□□□ -0.26
NUP88-211ENST00000575976 MAP3K1Q13233 1512 aa13.43□□□□□ -0.26
NUP88-211ENST00000575976 MTUS2Q5JR59 1369 aa13.43□□□□□ -0.26
NUP88-211ENST00000575976 GLI2P10070 1586 aa13.42□□□□□ -0.26
NUP88-211ENST00000575976 CFAP43Q8NDM7 1665 aa13.42□□□□□ -0.26
NUP88-211ENST00000575976 TSPOAP1O95153 1857 aa13.42□□□□□ -0.26
NUP88-211ENST00000575976 LRRC9Q6ZRR7 1453 aa13.4□□□□□ -0.26
NUP88-211ENST00000575976 FBXO41Q8TF61 875 aa13.39□□□□□ -0.27
NUP88-211ENST00000575976 KIF14Q15058 1648 aa13.39□□□□□ -0.27
NUP88-211ENST00000575976 EHBP1L1Q8N3D4 1523 aa13.39□□□□□ -0.27
NUP88-211ENST00000575976 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.39□□□□□ -0.27
NUP88-211ENST00000575976 CD109Q6YHK3 1445 aa13.38□□□□□ -0.27
NUP88-211ENST00000575976 HECW2Q9P2P5 1572 aa13.37□□□□□ -0.27
NUP88-211ENST00000575976 ABCA9Q8IUA7 1624 aa13.37□□□□□ -0.27
NUP88-211ENST00000575976 MAP3K4Q9Y6R4 1608 aa13.36□□□□□ -0.27
NUP88-211ENST00000575976 PPARGC1BQ86YN6 1023 aaKnown RBP13.35□□□□□ -0.27
NUP88-211ENST00000575976 TTC37Q6PGP7 1564 aa13.35□□□□□ -0.27
NUP88-211ENST00000575976 ADGRL1O94910 1474 aa13.35□□□□□ -0.27
NUP88-211ENST00000575976 PLCH2O75038 1416 aa13.32□□□□□ -0.28
NUP88-211ENST00000575976 NCOA2Q15596 1464 aa13.32□□□□□ -0.28
NUP88-211ENST00000575976 PPRC1Q5VV67 1664 aaKnown RBP13.31□□□□□ -0.28
NUP88-211ENST00000575976 SUPT6HQ7KZ85 1726 aaKnown RBP13.31□□□□□ -0.28
NUP88-211ENST00000575976 CCNB3Q8WWL7 1395 aa13.31□□□□□ -0.28
NUP88-211ENST00000575976 GPATCH8Q9UKJ3 1502 aaKnown RBP13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms