RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 KIAA0586Q9BVV6 1533 aa28.05■■■□□ 2.08
NUP88-210ENST00000574867 IQGAP2Q13576 1575 aa27.99■■■□□ 2.07
NUP88-210ENST00000574867 SHROOM2Q13796 1616 aa27.96■■■□□ 2.07
NUP88-210ENST00000574867 UBTFP17480 764 aaKnown RBP27.87■■■□□ 2.05
NUP88-210ENST00000574867 EHMT2Q96KQ7 1210 aa27.86■■■□□ 2.05
NUP88-210ENST00000574867 UGGT2Q9NYU1 1516 aa27.85■■■□□ 2.05
NUP88-210ENST00000574867 JPH4Q96JJ6 628 aa27.85■■■□□ 2.05
NUP88-210ENST00000574867 DNAJC5Q9H3Z4 198 aa27.84■■■□□ 2.05
NUP88-210ENST00000574867 ARHGEF11O15085 1522 aa27.81■■■□□ 2.04
NUP88-210ENST00000574867 PRG4Q92954 1404 aaPredicted RBP27.8■■■□□ 2.04
NUP88-210ENST00000574867 TNIKQ9UKE5 1360 aa27.77■■■□□ 2.04
NUP88-210ENST00000574867 RIMBP3CA6NJZ7 1639 aa27.76■■■□□ 2.03
NUP88-210ENST00000574867 RIMBP3BA6NNM3 1639 aa27.76■■■□□ 2.03
NUP88-210ENST00000574867 RIMBP3Q9UFD9 1639 aa27.76■■■□□ 2.03
NUP88-210ENST00000574867 CARMIL2Q6F5E8 1435 aa27.74■■■□□ 2.03
NUP88-210ENST00000574867 ERCC6L2Q5T890 1561 aa27.73■■■□□ 2.03
NUP88-210ENST00000574867 KIAA0556O60303 1618 aa27.72■■■□□ 2.03
NUP88-210ENST00000574867 DISP1Q96F81 1524 aa27.72■■■□□ 2.03
NUP88-210ENST00000574867 SAMD9Q5K651 1589 aa27.71■■■□□ 2.03
NUP88-210ENST00000574867 EFCAB5A4FU69 1503 aa27.69■■■□□ 2.02
NUP88-210ENST00000574867 LOC105371045A0A1W2PR82 267 aa27.67■■■□□ 2.02
NUP88-210ENST00000574867 ARAP1Q96P48 1450 aa27.61■■■□□ 2.01
NUP88-210ENST00000574867 RANGAP1P46060 587 aaPredicted RBP27.59■■■□□ 2.01
NUP88-210ENST00000574867 ARHGAP35Q9NRY4 1499 aa27.56■■■□□ 2
NUP88-210ENST00000574867 CLIP1P30622 1438 aa27.55■■■□□ 2
NUP88-210ENST00000574867 CEP162Q5TB80 1403 aa27.54■■■□□ 2
NUP88-210ENST00000574867 PTPRGP23470 1445 aa27.52■■■□□ 2
NUP88-210ENST00000574867 FHOD3Q2V2M9 1422 aa27.49■■□□□ 1.99
NUP88-210ENST00000574867 P3H3Q8IVL6 736 aa27.48■■□□□ 1.99
NUP88-210ENST00000574867 CYB5RLQ6IPT4 315 aa27.43■■□□□ 1.98
NUP88-210ENST00000574867 TTBK1Q5TCY1 1321 aaPredicted RBP27.4■■□□□ 1.98
NUP88-210ENST00000574867 FMN1Q68DA7 1419 aa27.4■■□□□ 1.98
NUP88-210ENST00000574867 UACAQ9BZF9 1416 aa27.37■■□□□ 1.97
NUP88-210ENST00000574867 ABCA8O94911 1581 aa27.37■■□□□ 1.97
NUP88-210ENST00000574867 UHRF1BP1LA0JNW5 1464 aa27.35■■□□□ 1.97
NUP88-210ENST00000574867 ABCC2Q92887 1545 aa27.35■■□□□ 1.97
NUP88-210ENST00000574867 ADCY10Q96PN6 1610 aa27.35■■□□□ 1.97
NUP88-210ENST00000574867 PLB1Q6P1J6 1458 aa27.34■■□□□ 1.97
NUP88-210ENST00000574867 RAPGEF6Q8TEU7 1601 aa27.34■■□□□ 1.97
NUP88-210ENST00000574867 HECW1Q76N89 1606 aa27.24■■□□□ 1.95
NUP88-210ENST00000574867 PCF11O94913 1555 aaKnown RBP27.24■■□□□ 1.95
NUP88-210ENST00000574867 CASKIN1Q8WXD9 1431 aa27.21■■□□□ 1.95
NUP88-210ENST00000574867 FYCO1Q9BQS8 1478 aa27.21■■□□□ 1.95
NUP88-210ENST00000574867 KDM5BQ9UGL1 1544 aa27.21■■□□□ 1.95
NUP88-210ENST00000574867 NUP153P49790 1475 aaKnown RBP27.21■■□□□ 1.95
NUP88-210ENST00000574867 VPS8Q8N3P4 1428 aa27.2■■□□□ 1.94
NUP88-210ENST00000574867 ZCCHC11Q5TAX3 1644 aaKnown RBP27.17■■□□□ 1.94
NUP88-210ENST00000574867 NPM1P06748 294 aaKnown RBP eCLIP27.15■■□□□ 1.94
NUP88-210ENST00000574867 MAPKBP1O60336 1514 aa27.11■■□□□ 1.93
NUP88-210ENST00000574867 EPRSP07814 1512 aaKnown RBP27.1■■□□□ 1.93
NUP88-210ENST00000574867 ATP10BO94823 1461 aa27.1■■□□□ 1.93
NUP88-210ENST00000574867 CCDC18Q5T9S5 1454 aa27.1■■□□□ 1.93
NUP88-210ENST00000574867 LRRIQ1Q96JM4 1722 aa27.09■■□□□ 1.93
NUP88-210ENST00000574867 ATP1B4Q9UN42 357 aaPredicted RBP27.07■■□□□ 1.92
NUP88-210ENST00000574867 CDK13Q14004 1512 aaKnown RBP27.05■■□□□ 1.92
NUP88-210ENST00000574867 ARID3CA6NKF2 412 aa27.03■■□□□ 1.92
NUP88-210ENST00000574867 ASXL2Q76L83 1435 aa27.01■■□□□ 1.91
NUP88-210ENST00000574867 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.99■■□□□ 1.91
NUP88-210ENST00000574867 HNRNPUL2Q1KMD3 747 aaKnown RBP26.99■■□□□ 1.91
NUP88-210ENST00000574867 CFAP43Q8NDM7 1665 aa26.98■■□□□ 1.91
NUP88-210ENST00000574867 WDR7Q9Y4E6 1490 aa26.98■■□□□ 1.91
NUP88-210ENST00000574867 MAP3K1Q13233 1512 aa26.93■■□□□ 1.9
NUP88-210ENST00000574867 CDK11AQ9UQ88 783 aaPredicted RBP26.93■■□□□ 1.9
NUP88-210ENST00000574867 TIAM1Q13009 1591 aa26.93■■□□□ 1.9
NUP88-210ENST00000574867 PLEKHD1A6NEE1 506 aa26.89■■□□□ 1.9
NUP88-210ENST00000574867 DIP2BQ9P265 1576 aa26.89■■□□□ 1.89
NUP88-210ENST00000574867 ABCC10Q5T3U5 1492 aa26.88■■□□□ 1.89
NUP88-210ENST00000574867 TROQ12816 1431 aaPredicted RBP26.86■■□□□ 1.89
NUP88-210ENST00000574867 MAGI3Q5TCQ9 1506 aa26.85■■□□□ 1.89
NUP88-210ENST00000574867 APLP2Q06481 763 aa26.85■■□□□ 1.89
NUP88-210ENST00000574867 EHBP1L1Q8N3D4 1523 aa26.84■■□□□ 1.89
NUP88-210ENST00000574867 GLI2P10070 1586 aa26.84■■□□□ 1.89
NUP88-210ENST00000574867 KIF13AQ9H1H9 1805 aa26.82■■□□□ 1.88
NUP88-210ENST00000574867 KIF14Q15058 1648 aa26.82■■□□□ 1.88
NUP88-210ENST00000574867 MTUS2Q5JR59 1369 aa26.81■■□□□ 1.88
NUP88-210ENST00000574867 LRRC9Q6ZRR7 1453 aa26.78■■□□□ 1.88
NUP88-210ENST00000574867 ABCA9Q8IUA7 1624 aa26.77■■□□□ 1.88
NUP88-210ENST00000574867 KCNH8Q96L42 1107 aa26.77■■□□□ 1.88
NUP88-210ENST00000574867 FAM69CQ0P6D2 419 aa26.74■■□□□ 1.87
NUP88-210ENST00000574867 MAP3K4Q9Y6R4 1608 aa26.73■■□□□ 1.87
NUP88-210ENST00000574867 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.73■■□□□ 1.87
NUP88-210ENST00000574867 TRHP20396 242 aaPredicted RBP26.72■■□□□ 1.87
NUP88-210ENST00000574867 SUPT6HQ7KZ85 1726 aaKnown RBP26.71■■□□□ 1.87
NUP88-210ENST00000574867 TTC37Q6PGP7 1564 aa26.71■■□□□ 1.87
NUP88-210ENST00000574867 KANK4Q5T7N3 995 aaPredicted RBP26.67■■□□□ 1.86
NUP88-210ENST00000574867 MYO5CQ9NQX4 1742 aa26.65■■□□□ 1.86
NUP88-210ENST00000574867 CD109Q6YHK3 1445 aa26.64■■□□□ 1.86
NUP88-210ENST00000574867 NCOA2Q15596 1464 aa26.63■■□□□ 1.85
NUP88-210ENST00000574867 ARAP3Q8WWN8 1544 aa26.6■■□□□ 1.85
NUP88-210ENST00000574867 TSPOAP1O95153 1857 aa26.6■■□□□ 1.85
NUP88-210ENST00000574867 PPRC1Q5VV67 1664 aaKnown RBP26.59■■□□□ 1.85
NUP88-210ENST00000574867 PREX2Q70Z35 1606 aa26.59■■□□□ 1.85
NUP88-210ENST00000574867 CDC42BPAQ5VT25 1732 aa26.58■■□□□ 1.85
NUP88-210ENST00000574867 ITSN2Q9NZM3 1697 aa26.58■■□□□ 1.85
NUP88-210ENST00000574867 TEX14Q8IWB6 1497 aa26.58■■□□□ 1.85
NUP88-210ENST00000574867 CCNB3Q8WWL7 1395 aa26.56■■□□□ 1.84
NUP88-210ENST00000574867 PLCH2O75038 1416 aa26.56■■□□□ 1.84
NUP88-210ENST00000574867 CFAP74Q9C0B2 1584 aa26.55■■□□□ 1.84
NUP88-210ENST00000574867 GPATCH8Q9UKJ3 1502 aaKnown RBP26.53■■□□□ 1.84
NUP88-210ENST00000574867 CDC42BPBQ9Y5S2 1711 aa26.52■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms