RNA–Protein interactions for RNA: ENST00000573827.1

SMG6-214, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-214ENST00000573827 PRG4Q92954 1404 aaPredicted RBP30.16■■■□□ 2.42
SMG6-214ENST00000573827 CARMIL1Q5VZK9 1371 aa30.13■■■□□ 2.41
SMG6-214ENST00000573827 KIAA0586Q9BVV6 1533 aa30.12■■■□□ 2.41
SMG6-214ENST00000573827 TRHP20396 242 aaPredicted RBP30.07■■■□□ 2.4
SMG6-214ENST00000573827 RAPGEF2Q9Y4G8 1499 aa29.88■■■□□ 2.37
SMG6-214ENST00000573827 IQGAP2Q13576 1575 aa29.84■■■□□ 2.37
SMG6-214ENST00000573827 ADCY10Q96PN6 1610 aa29.81■■■□□ 2.36
SMG6-214ENST00000573827 DISP1Q96F81 1524 aa29.76■■■□□ 2.36
SMG6-214ENST00000573827 PRXQ9BXM0 1461 aa29.75■■■□□ 2.35
SMG6-214ENST00000573827 PTPRGP23470 1445 aa29.73■■■□□ 2.35
SMG6-214ENST00000573827 UGGT2Q9NYU1 1516 aa29.73■■■□□ 2.35
SMG6-214ENST00000573827 TNIKQ9UKE5 1360 aa29.72■■■□□ 2.35
SMG6-214ENST00000573827 CARMIL2Q6F5E8 1435 aa29.71■■■□□ 2.35
SMG6-214ENST00000573827 MAPKBP1O60336 1514 aa29.71■■■□□ 2.35
SMG6-214ENST00000573827 KIF13AQ9H1H9 1805 aa29.68■■■□□ 2.34
SMG6-214ENST00000573827 ABCC10Q5T3U5 1492 aa29.63■■■□□ 2.33
SMG6-214ENST00000573827 KIAA0556O60303 1618 aa29.6■■■□□ 2.33
SMG6-214ENST00000573827 NPM1P06748 294 aaKnown RBP eCLIP29.59■■■□□ 2.33
SMG6-214ENST00000573827 UHRF1BP1LA0JNW5 1464 aa29.58■■■□□ 2.33
SMG6-214ENST00000573827 CTTNBP2Q8WZ74 1663 aa29.58■■■□□ 2.33
SMG6-214ENST00000573827 DIP2BQ9P265 1576 aa29.56■■■□□ 2.32
SMG6-214ENST00000573827 ABCC2Q92887 1545 aa29.56■■■□□ 2.32
SMG6-214ENST00000573827 TTBK1Q5TCY1 1321 aaPredicted RBP29.54■■■□□ 2.32
SMG6-214ENST00000573827 UACAQ9BZF9 1416 aa29.54■■■□□ 2.32
SMG6-214ENST00000573827 CSRNP3Q8WYN3 585 aa29.52■■■□□ 2.32
SMG6-214ENST00000573827 FAM69CQ0P6D2 419 aa29.51■■■□□ 2.31
SMG6-214ENST00000573827 EEA1Q15075 1411 aa29.45■■■□□ 2.31
SMG6-214ENST00000573827 KDM5BQ9UGL1 1544 aa29.45■■■□□ 2.3
SMG6-214ENST00000573827 GOLGA3Q08378 1498 aa29.42■■■□□ 2.3
SMG6-214ENST00000573827 ASXL2Q76L83 1435 aa29.41■■■□□ 2.3
SMG6-214ENST00000573827 PLB1Q6P1J6 1458 aa29.37■■■□□ 2.29
SMG6-214ENST00000573827 CHIC1Q5VXU3 224 aa29.34■■■□□ 2.29
SMG6-214ENST00000573827 ABCA8O94911 1581 aa29.34■■■□□ 2.29
SMG6-214ENST00000573827 ZCCHC11Q5TAX3 1644 aaKnown RBP29.32■■■□□ 2.28
SMG6-214ENST00000573827 GLI2P10070 1586 aa29.32■■■□□ 2.28
SMG6-214ENST00000573827 SAMD9Q5K651 1589 aa29.28■■■□□ 2.28
SMG6-214ENST00000573827 EPRSP07814 1512 aaKnown RBP29.26■■■□□ 2.27
SMG6-214ENST00000573827 FAM9AQ8IZU1 332 aaPredicted RBP29.25■■■□□ 2.27
SMG6-214ENST00000573827 PPRC1Q5VV67 1664 aaKnown RBP29.23■■■□□ 2.27
SMG6-214ENST00000573827 KIF21BO75037 1637 aa29.23■■■□□ 2.27
SMG6-214ENST00000573827 TSPOAP1O95153 1857 aa29.23■■■□□ 2.27
SMG6-214ENST00000573827 WDR7Q9Y4E6 1490 aa29.18■■■□□ 2.26
SMG6-214ENST00000573827 P3H3Q8IVL6 736 aa29.18■■■□□ 2.26
SMG6-214ENST00000573827 MAP3K4Q9Y6R4 1608 aa29.16■■■□□ 2.26
SMG6-214ENST00000573827 KDM6BO15054 1643 aa29.13■■■□□ 2.25
SMG6-214ENST00000573827 ATP10BO94823 1461 aa29.09■■■□□ 2.25
SMG6-214ENST00000573827 FHOD3Q2V2M9 1422 aa29.05■■■□□ 2.24
SMG6-214ENST00000573827 COL17A1Q9UMD9 1497 aaPredicted RBP29.04■■■□□ 2.24
SMG6-214ENST00000573827 RAPGEF6Q8TEU7 1601 aa29.02■■■□□ 2.24
SMG6-214ENST00000573827 NUP153P49790 1475 aaKnown RBP29■■■□□ 2.23
SMG6-214ENST00000573827 EFCAB5A4FU69 1503 aa28.99■■■□□ 2.23
SMG6-214ENST00000573827 RANGAP1P46060 587 aaPredicted RBP28.98■■■□□ 2.23
SMG6-214ENST00000573827 TEX14Q8IWB6 1497 aa28.97■■■□□ 2.23
SMG6-214ENST00000573827 ARID3CA6NKF2 412 aa28.97■■■□□ 2.23
SMG6-214ENST00000573827 MAGI3Q5TCQ9 1506 aa28.96■■■□□ 2.23
SMG6-214ENST00000573827 KCNH8Q96L42 1107 aa28.95■■■□□ 2.22
SMG6-214ENST00000573827 CFAP43Q8NDM7 1665 aa28.95■■■□□ 2.22
SMG6-214ENST00000573827 CD109Q6YHK3 1445 aa28.94■■■□□ 2.22
SMG6-214ENST00000573827 UBTFP17480 764 aaKnown RBP28.87■■■□□ 2.21
SMG6-214ENST00000573827 EHMT2Q96KQ7 1210 aa28.86■■■□□ 2.21
SMG6-214ENST00000573827 ARHGAP35Q9NRY4 1499 aa28.85■■■□□ 2.21
SMG6-214ENST00000573827 ABCA9Q8IUA7 1624 aa28.84■■■□□ 2.21
SMG6-214ENST00000573827 AEBP2Q6ZN18 517 aaPredicted RBP28.84■■■□□ 2.21
SMG6-214ENST00000573827 KDM4FA0A1W2PPD8 638 aa28.79■■■□□ 2.2
SMG6-214ENST00000573827 ARAP3Q8WWN8 1544 aa28.73■■■□□ 2.19
SMG6-214ENST00000573827 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.72■■■□□ 2.19
SMG6-214ENST00000573827 HNRNPUL2Q1KMD3 747 aaKnown RBP28.72■■■□□ 2.19
SMG6-214ENST00000573827 FMN1Q68DA7 1419 aa28.71■■■□□ 2.19
SMG6-214ENST00000573827 CDK13Q14004 1512 aaKnown RBP28.7■■■□□ 2.19
SMG6-214ENST00000573827 PLEKHD1A6NEE1 506 aa28.67■■■□□ 2.18
SMG6-214ENST00000573827 PHLDB1Q86UU1 1377 aa28.65■■■□□ 2.18
SMG6-214ENST00000573827 NEO1Q92859 1461 aa28.65■■■□□ 2.18
SMG6-214ENST00000573827 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.63■■■□□ 2.17
SMG6-214ENST00000573827 HECW1Q76N89 1606 aa28.61■■■□□ 2.17
SMG6-214ENST00000573827 ADGRL1O94910 1474 aa28.59■■■□□ 2.17
SMG6-214ENST00000573827 TTC37Q6PGP7 1564 aa28.59■■■□□ 2.17
SMG6-214ENST00000573827 FRMPD1Q5SYB0 1578 aa28.54■■■□□ 2.16
SMG6-214ENST00000573827 LRRIQ1Q96JM4 1722 aa28.53■■■□□ 2.16
SMG6-214ENST00000573827 RAPGEF3O95398 923 aa28.52■■■□□ 2.16
SMG6-214ENST00000573827 CASKIN1Q8WXD9 1431 aa28.5■■■□□ 2.15
SMG6-214ENST00000573827 FANCAO15360 1455 aa28.48■■■□□ 2.15
SMG6-214ENST00000573827 PCF11O94913 1555 aaKnown RBP28.48■■■□□ 2.15
SMG6-214ENST00000573827 AKNAQ7Z591 1439 aa28.47■■■□□ 2.15
SMG6-214ENST00000573827 ATP1B4Q9UN42 357 aaPredicted RBP28.47■■■□□ 2.15
SMG6-214ENST00000573827 CLIP1P30622 1438 aa28.46■■■□□ 2.15
SMG6-214ENST00000573827 PLCH2O75038 1416 aa28.45■■■□□ 2.15
SMG6-214ENST00000573827 TROQ12816 1431 aaPredicted RBP28.45■■■□□ 2.15
SMG6-214ENST00000573827 KIF14Q15058 1648 aa28.44■■■□□ 2.14
SMG6-214ENST00000573827 CFAP74Q9C0B2 1584 aa28.41■■■□□ 2.14
SMG6-214ENST00000573827 DENND4BO75064 1496 aaPredicted RBP28.41■■■□□ 2.14
SMG6-214ENST00000573827 RICTORQ6R327 1708 aa28.41■■■□□ 2.14
SMG6-214ENST00000573827 CDK11AQ9UQ88 783 aaPredicted RBP28.41■■■□□ 2.14
SMG6-214ENST00000573827 FYCO1Q9BQS8 1478 aa28.38■■■□□ 2.13
SMG6-214ENST00000573827 CCDC18Q5T9S5 1454 aa28.37■■■□□ 2.13
SMG6-214ENST00000573827 ZMYM4Q5VZL5 1548 aa28.34■■■□□ 2.13
SMG6-214ENST00000573827 MYO5CQ9NQX4 1742 aa28.32■■■□□ 2.12
SMG6-214ENST00000573827 ARHGEF40Q8TER5 1519 aa28.32■■■□□ 2.12
SMG6-214ENST00000573827 POGZQ7Z3K3 1410 aa28.29■■■□□ 2.12
SMG6-214ENST00000573827 SCAPERQ9BY12 1400 aa28.29■■■□□ 2.12
SMG6-214ENST00000573827 EFCAB2Q5VUJ9 269 aa28.27■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms