RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 KIF13AQ9H1H9 1805 aa11.95□□□□□ -0.5
VPS53-213ENST00000572334 PRG4Q92954 1404 aaPredicted RBP11.94□□□□□ -0.5
VPS53-213ENST00000572334 JPH4Q96JJ6 628 aa11.92□□□□□ -0.5
VPS53-213ENST00000572334 IGF1RP08069 1367 aa11.92□□□□□ -0.5
VPS53-213ENST00000572334 CUL7Q14999 1698 aa11.9□□□□□ -0.5
VPS53-213ENST00000572334 KIF27Q86VH2 1401 aa11.87□□□□□ -0.51
VPS53-213ENST00000572334 KIAA0586Q9BVV6 1533 aa11.86□□□□□ -0.51
VPS53-213ENST00000572334 ADCY10Q96PN6 1610 aa11.86□□□□□ -0.51
VPS53-213ENST00000572334 MAPKBP1O60336 1514 aa11.82□□□□□ -0.52
VPS53-213ENST00000572334 PHF23Q9BUL5 403 aaPredicted RBP11.82□□□□□ -0.52
VPS53-213ENST00000572334 CARMIL1Q5VZK9 1371 aa11.8□□□□□ -0.52
VPS53-213ENST00000572334 DIP2BQ9P265 1576 aa11.8□□□□□ -0.52
VPS53-213ENST00000572334 ABCC10Q5T3U5 1492 aa11.8□□□□□ -0.52
VPS53-213ENST00000572334 IQGAP2Q13576 1575 aa11.76□□□□□ -0.53
VPS53-213ENST00000572334 TSPOAP1O95153 1857 aa11.74□□□□□ -0.53
VPS53-213ENST00000572334 FAM69CQ0P6D2 419 aa11.74□□□□□ -0.53
VPS53-213ENST00000572334 DISP1Q96F81 1524 aa11.74□□□□□ -0.53
VPS53-213ENST00000572334 PTPRGP23470 1445 aa11.73□□□□□ -0.53
VPS53-213ENST00000572334 TNIKQ9UKE5 1360 aa11.71□□□□□ -0.53
VPS53-213ENST00000572334 NPM1P06748 294 aaKnown RBP eCLIP11.71□□□□□ -0.53
VPS53-213ENST00000572334 ABCC2Q92887 1545 aa11.7□□□□□ -0.54
VPS53-213ENST00000572334 UGGT2Q9NYU1 1516 aa11.7□□□□□ -0.54
VPS53-213ENST00000572334 RAPGEF2Q9Y4G8 1499 aa11.7□□□□□ -0.54
VPS53-213ENST00000572334 PPRC1Q5VV67 1664 aaKnown RBP11.7□□□□□ -0.54
VPS53-213ENST00000572334 UHRF1BP1LA0JNW5 1464 aa11.69□□□□□ -0.54
VPS53-213ENST00000572334 CARMIL2Q6F5E8 1435 aa11.69□□□□□ -0.54
VPS53-213ENST00000572334 CTTNBP2Q8WZ74 1663 aa11.68□□□□□ -0.54
VPS53-213ENST00000572334 KIAA0556O60303 1618 aa11.68□□□□□ -0.54
VPS53-213ENST00000572334 KDM6BO15054 1643 aa11.66□□□□□ -0.54
VPS53-213ENST00000572334 GLI2P10070 1586 aa11.66□□□□□ -0.54
VPS53-213ENST00000572334 TTBK1Q5TCY1 1321 aaPredicted RBP11.65□□□□□ -0.54
VPS53-213ENST00000572334 ASXL2Q76L83 1435 aa11.65□□□□□ -0.54
VPS53-213ENST00000572334 UACAQ9BZF9 1416 aa11.65□□□□□ -0.54
VPS53-213ENST00000572334 KDM5BQ9UGL1 1544 aa11.65□□□□□ -0.55
VPS53-213ENST00000572334 ZCCHC11Q5TAX3 1644 aaKnown RBP11.64□□□□□ -0.55
VPS53-213ENST00000572334 PLB1Q6P1J6 1458 aa11.63□□□□□ -0.55
VPS53-213ENST00000572334 MAP3K4Q9Y6R4 1608 aa11.62□□□□□ -0.55
VPS53-213ENST00000572334 PRXQ9BXM0 1461 aa11.62□□□□□ -0.55
VPS53-213ENST00000572334 EPRSP07814 1512 aaKnown RBP11.6□□□□□ -0.55
VPS53-213ENST00000572334 ABCA8O94911 1581 aa11.58□□□□□ -0.55
VPS53-213ENST00000572334 COL17A1Q9UMD9 1497 aaPredicted RBP11.58□□□□□ -0.56
VPS53-213ENST00000572334 KDM4FA0A1W2PPD8 638 aa11.57□□□□□ -0.56
VPS53-213ENST00000572334 WDR7Q9Y4E6 1490 aa11.54□□□□□ -0.56
VPS53-213ENST00000572334 GOLGA3Q08378 1498 aa11.53□□□□□ -0.56
VPS53-213ENST00000572334 CFAP43Q8NDM7 1665 aa11.51□□□□□ -0.57
VPS53-213ENST00000572334 SAMD9Q5K651 1589 aa11.5□□□□□ -0.57
VPS53-213ENST00000572334 TEX14Q8IWB6 1497 aa11.49□□□□□ -0.57
VPS53-213ENST00000572334 MAGI3Q5TCQ9 1506 aa11.48□□□□□ -0.57
VPS53-213ENST00000572334 ATP10BO94823 1461 aa11.46□□□□□ -0.57
VPS53-213ENST00000572334 CSRNP3Q8WYN3 585 aa11.46□□□□□ -0.57
VPS53-213ENST00000572334 ADGRL1O94910 1474 aa11.45□□□□□ -0.58
VPS53-213ENST00000572334 CD109Q6YHK3 1445 aa11.44□□□□□ -0.58
VPS53-213ENST00000572334 P3H3Q8IVL6 736 aa11.44□□□□□ -0.58
VPS53-213ENST00000572334 RAPGEF6Q8TEU7 1601 aa11.44□□□□□ -0.58
VPS53-213ENST00000572334 KCNH8Q96L42 1107 aa11.43□□□□□ -0.58
VPS53-213ENST00000572334 ABCA9Q8IUA7 1624 aa11.42□□□□□ -0.58
VPS53-213ENST00000572334 EEA1Q15075 1411 aa11.41□□□□□ -0.58
VPS53-213ENST00000572334 ARID3CA6NKF2 412 aa11.4□□□□□ -0.58
VPS53-213ENST00000572334 NUP153P49790 1475 aaKnown RBP11.39□□□□□ -0.59
VPS53-213ENST00000572334 ARAP3Q8WWN8 1544 aa11.39□□□□□ -0.59
VPS53-213ENST00000572334 KIF21BO75037 1637 aa11.38□□□□□ -0.59
VPS53-213ENST00000572334 FHOD3Q2V2M9 1422 aa11.38□□□□□ -0.59
VPS53-213ENST00000572334 FRMPD1Q5SYB0 1578 aa11.35□□□□□ -0.59
VPS53-213ENST00000572334 FAM9AQ8IZU1 332 aaPredicted RBP11.33□□□□□ -0.6
VPS53-213ENST00000572334 EFCAB5A4FU69 1503 aa11.33□□□□□ -0.6
VPS53-213ENST00000572334 HECW2Q9P2P5 1572 aa11.33□□□□□ -0.6
VPS53-213ENST00000572334 RICTORQ6R327 1708 aa11.32□□□□□ -0.6
VPS53-213ENST00000572334 NEO1Q92859 1461 aa11.32□□□□□ -0.6
VPS53-213ENST00000572334 RANGAP1P46060 587 aaPredicted RBP11.31□□□□□ -0.6
VPS53-213ENST00000572334 ADAMTSL3P82987 1691 aa11.3□□□□□ -0.6
VPS53-213ENST00000572334 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.3□□□□□ -0.6
VPS53-213ENST00000572334 PHLDB1Q86UU1 1377 aa11.3□□□□□ -0.6
VPS53-213ENST00000572334 POTEDQ86YR6 584 aa11.3□□□□□ -0.6
VPS53-213ENST00000572334 TTC37Q6PGP7 1564 aa11.29□□□□□ -0.6
VPS53-213ENST00000572334 RAPGEF3O95398 923 aa11.29□□□□□ -0.6
VPS53-213ENST00000572334 CDK13Q14004 1512 aaKnown RBP11.29□□□□□ -0.6
VPS53-213ENST00000572334 LRRIQ1Q96JM4 1722 aa11.28□□□□□ -0.6
VPS53-213ENST00000572334 BCORL1Q5H9F3 1711 aa11.27□□□□□ -0.61
VPS53-213ENST00000572334 SIGLEC1Q9BZZ2 1709 aa11.27□□□□□ -0.61
VPS53-213ENST00000572334 ARHGAP35Q9NRY4 1499 aa11.26□□□□□ -0.61
VPS53-213ENST00000572334 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.26□□□□□ -0.61
VPS53-213ENST00000572334 FOXD1Q16676 465 aa11.26□□□□□ -0.61
VPS53-213ENST00000572334 HNRNPUL2Q1KMD3 747 aaKnown RBP11.26□□□□□ -0.61
VPS53-213ENST00000572334 ARHGEF40Q8TER5 1519 aa11.25□□□□□ -0.61
VPS53-213ENST00000572334 CFAP74Q9C0B2 1584 aa11.24□□□□□ -0.61
VPS53-213ENST00000572334 PLEKHD1A6NEE1 506 aa11.24□□□□□ -0.61
VPS53-213ENST00000572334 AKNAQ7Z591 1439 aa11.24□□□□□ -0.61
VPS53-213ENST00000572334 FANCAO15360 1455 aa11.24□□□□□ -0.61
VPS53-213ENST00000572334 MADDQ8WXG6 1647 aa11.24□□□□□ -0.61
VPS53-213ENST00000572334 PTPRMP28827 1452 aa11.23□□□□□ -0.61
VPS53-213ENST00000572334 ZMYM4Q5VZL5 1548 aa11.23□□□□□ -0.61
VPS53-213ENST00000572334 DENND4BO75064 1496 aaPredicted RBP11.22□□□□□ -0.61
VPS53-213ENST00000572334 KIF14Q15058 1648 aa11.22□□□□□ -0.61
VPS53-213ENST00000572334 HECW1Q76N89 1606 aa11.22□□□□□ -0.61
VPS53-213ENST00000572334 EHMT2Q96KQ7 1210 aa11.21□□□□□ -0.61
VPS53-213ENST00000572334 MYO5CQ9NQX4 1742 aa11.21□□□□□ -0.62
VPS53-213ENST00000572334 ILDR1Q86SU0 546 aaPredicted RBP11.2□□□□□ -0.62
VPS53-213ENST00000572334 PLCH2O75038 1416 aa11.19□□□□□ -0.62
VPS53-213ENST00000572334 FMN1Q68DA7 1419 aa11.19□□□□□ -0.62
VPS53-213ENST00000572334 YEATS2Q9ULM3 1422 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms