RNA–Protein interactions for RNA: ENST00000571263.2

CDRT1-206, CMT1A duplicated region transcript 1, humanhuman

TSL 1 (best)

Gene CDRT1, Length 800 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDRT1-206ENST00000571263 NUP160Q12769 1436 aa19.04■□□□□ 0.64
CDRT1-206ENST00000571263 CEP162Q5TB80 1403 aa19.02■□□□□ 0.64
CDRT1-206ENST00000571263 CHD1O14646 1710 aa19■□□□□ 0.63
CDRT1-206ENST00000571263 CLIP1P30622 1438 aa18.99■□□□□ 0.63
CDRT1-206ENST00000571263 IQGAP2Q13576 1575 aa18.98■□□□□ 0.63
CDRT1-206ENST00000571263 CEP170Q5SW79 1584 aa18.97■□□□□ 0.63
CDRT1-206ENST00000571263 EFCAB5A4FU69 1503 aa18.95■□□□□ 0.62
CDRT1-206ENST00000571263 OSCARQ8IYS5 282 aa18.93■□□□□ 0.62
CDRT1-206ENST00000571263 UGGT2Q9NYU1 1516 aa18.91■□□□□ 0.62
CDRT1-206ENST00000571263 JPH4Q96JJ6 628 aa18.91■□□□□ 0.62
CDRT1-206ENST00000571263 RANGAP1P46060 587 aaPredicted RBP18.89■□□□□ 0.61
CDRT1-206ENST00000571263 CARMIL2Q6F5E8 1435 aa18.87■□□□□ 0.61
CDRT1-206ENST00000571263 ARHGAP35Q9NRY4 1499 aa18.87■□□□□ 0.61
CDRT1-206ENST00000571263 SAMD9Q5K651 1589 aa18.85■□□□□ 0.61
CDRT1-206ENST00000571263 CLASP1Q7Z460 1538 aa18.84■□□□□ 0.61
CDRT1-206ENST00000571263 SHROOM2Q13796 1616 aa18.8■□□□□ 0.6
CDRT1-206ENST00000571263 FMN1Q68DA7 1419 aa18.79■□□□□ 0.6
CDRT1-206ENST00000571263 VPS8Q8N3P4 1428 aa18.79■□□□□ 0.6
CDRT1-206ENST00000571263 ARAP1Q96P48 1450 aa18.78■□□□□ 0.6
CDRT1-206ENST00000571263 DISP1Q96F81 1524 aa18.78■□□□□ 0.6
CDRT1-206ENST00000571263 PRG4Q92954 1404 aaPredicted RBP18.77■□□□□ 0.6
CDRT1-206ENST00000571263 KIAA0556O60303 1618 aa18.77■□□□□ 0.6
CDRT1-206ENST00000571263 P3H3Q8IVL6 736 aa18.76■□□□□ 0.59
CDRT1-206ENST00000571263 FHOD3Q2V2M9 1422 aa18.73■□□□□ 0.59
CDRT1-206ENST00000571263 APLP2Q06481 763 aa18.7■□□□□ 0.58
CDRT1-206ENST00000571263 CASKIN1Q8WXD9 1431 aa18.66■□□□□ 0.58
CDRT1-206ENST00000571263 PTPRGP23470 1445 aa18.66■□□□□ 0.58
CDRT1-206ENST00000571263 FYCO1Q9BQS8 1478 aa18.65■□□□□ 0.58
CDRT1-206ENST00000571263 MAP3K1Q13233 1512 aa18.61■□□□□ 0.57
CDRT1-206ENST00000571263 HECW1Q76N89 1606 aa18.57■□□□□ 0.56
CDRT1-206ENST00000571263 ATP1B4Q9UN42 357 aaPredicted RBP18.57■□□□□ 0.56
CDRT1-206ENST00000571263 PCF11O94913 1555 aaKnown RBP18.56■□□□□ 0.56
CDRT1-206ENST00000571263 CCDC18Q5T9S5 1454 aa18.56■□□□□ 0.56
CDRT1-206ENST00000571263 RAPGEF6Q8TEU7 1601 aa18.56■□□□□ 0.56
CDRT1-206ENST00000571263 ERCC6L2Q5T890 1561 aa18.55■□□□□ 0.56
CDRT1-206ENST00000571263 UACAQ9BZF9 1416 aa18.55■□□□□ 0.56
CDRT1-206ENST00000571263 TTBK1Q5TCY1 1321 aaPredicted RBP18.54■□□□□ 0.56
CDRT1-206ENST00000571263 ABCA8O94911 1581 aa18.54■□□□□ 0.56
CDRT1-206ENST00000571263 PLB1Q6P1J6 1458 aa18.52■□□□□ 0.55
CDRT1-206ENST00000571263 CDK11AQ9UQ88 783 aaPredicted RBP18.51■□□□□ 0.55
CDRT1-206ENST00000571263 UHRF1BP1LA0JNW5 1464 aa18.51■□□□□ 0.55
CDRT1-206ENST00000571263 ARHGEF11O15085 1522 aa18.5■□□□□ 0.55
CDRT1-206ENST00000571263 DNAJC5Q9H3Z4 198 aa18.5■□□□□ 0.55
CDRT1-206ENST00000571263 TIAM1Q13009 1591 aa18.49■□□□□ 0.55
CDRT1-206ENST00000571263 EPRSP07814 1512 aaKnown RBP18.49■□□□□ 0.55
CDRT1-206ENST00000571263 NUP153P49790 1475 aaKnown RBP18.47■□□□□ 0.55
CDRT1-206ENST00000571263 ABCC2Q92887 1545 aa18.47■□□□□ 0.55
CDRT1-206ENST00000571263 CFAP43Q8NDM7 1665 aa18.45■□□□□ 0.54
CDRT1-206ENST00000571263 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.43■□□□□ 0.54
CDRT1-206ENST00000571263 HNRNPUL2Q1KMD3 747 aaKnown RBP18.43■□□□□ 0.54
CDRT1-206ENST00000571263 LRRC9Q6ZRR7 1453 aa18.42■□□□□ 0.54
CDRT1-206ENST00000571263 RIMBP3CA6NJZ7 1639 aa18.41■□□□□ 0.54
CDRT1-206ENST00000571263 RIMBP3BA6NNM3 1639 aa18.41■□□□□ 0.54
CDRT1-206ENST00000571263 RIMBP3Q9UFD9 1639 aa18.41■□□□□ 0.54
CDRT1-206ENST00000571263 NPM1P06748 294 aaKnown RBP eCLIP18.41■□□□□ 0.54
CDRT1-206ENST00000571263 MTUS2Q5JR59 1369 aa18.41■□□□□ 0.54
CDRT1-206ENST00000571263 ATP10BO94823 1461 aa18.4■□□□□ 0.54
CDRT1-206ENST00000571263 PLEKHD1A6NEE1 506 aa18.4■□□□□ 0.54
CDRT1-206ENST00000571263 KDM5BQ9UGL1 1544 aa18.39■□□□□ 0.54
CDRT1-206ENST00000571263 LRRIQ1Q96JM4 1722 aa18.38■□□□□ 0.53
CDRT1-206ENST00000571263 KANK4Q5T7N3 995 aaPredicted RBP18.38■□□□□ 0.53
CDRT1-206ENST00000571263 CDK13Q14004 1512 aaKnown RBP18.36■□□□□ 0.53
CDRT1-206ENST00000571263 EHBP1L1Q8N3D4 1523 aa18.36■□□□□ 0.53
CDRT1-206ENST00000571263 CYB5RLQ6IPT4 315 aa18.35■□□□□ 0.53
CDRT1-206ENST00000571263 ADCY10Q96PN6 1610 aa18.34■□□□□ 0.53
CDRT1-206ENST00000571263 TROQ12816 1431 aaPredicted RBP18.33■□□□□ 0.53
CDRT1-206ENST00000571263 PPARGC1BQ86YN6 1023 aaKnown RBP18.33■□□□□ 0.52
CDRT1-206ENST00000571263 ARID3CA6NKF2 412 aa18.32■□□□□ 0.52
CDRT1-206ENST00000571263 TRIM26Q12899 539 aaPredicted RBP18.3■□□□□ 0.52
CDRT1-206ENST00000571263 ZCCHC11Q5TAX3 1644 aaKnown RBP18.3■□□□□ 0.52
CDRT1-206ENST00000571263 SUPT6HQ7KZ85 1726 aaKnown RBP18.29■□□□□ 0.52
CDRT1-206ENST00000571263 MAGI3Q5TCQ9 1506 aa18.26■□□□□ 0.51
CDRT1-206ENST00000571263 NCOA2Q15596 1464 aa18.24■□□□□ 0.51
CDRT1-206ENST00000571263 KIF14Q15058 1648 aa18.22■□□□□ 0.51
CDRT1-206ENST00000571263 WDR7Q9Y4E6 1490 aa18.21■□□□□ 0.51
CDRT1-206ENST00000571263 CCNB3Q8WWL7 1395 aa18.19■□□□□ 0.5
CDRT1-206ENST00000571263 ASXL2Q76L83 1435 aa18.19■□□□□ 0.5
CDRT1-206ENST00000571263 MAPKBP1O60336 1514 aa18.18■□□□□ 0.5
CDRT1-206ENST00000571263 MYOM3Q5VTT5 1437 aa18.18■□□□□ 0.5
CDRT1-206ENST00000571263 MIA2Q96PC5 1412 aa18.18■□□□□ 0.5
CDRT1-206ENST00000571263 PHLDB1Q86UU1 1377 aa18.17■□□□□ 0.5
CDRT1-206ENST00000571263 RRBP1Q9P2E9 1410 aaKnown RBP18.17■□□□□ 0.5
CDRT1-206ENST00000571263 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.17■□□□□ 0.5
CDRT1-206ENST00000571263 KCNH8Q96L42 1107 aa18.16■□□□□ 0.5
CDRT1-206ENST00000571263 ABCC10Q5T3U5 1492 aa18.14■□□□□ 0.5
CDRT1-206ENST00000571263 ITSN2Q9NZM3 1697 aa18.13■□□□□ 0.49
CDRT1-206ENST00000571263 FGD6Q6ZV73 1430 aa18.12■□□□□ 0.49
CDRT1-206ENST00000571263 CFDP1Q9UEE9 299 aaPredicted RBP18.11■□□□□ 0.49
CDRT1-206ENST00000571263 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.11■□□□□ 0.49
CDRT1-206ENST00000571263 GPATCH8Q9UKJ3 1502 aaKnown RBP18.11■□□□□ 0.49
CDRT1-206ENST00000571263 ABCA9Q8IUA7 1624 aa18.08■□□□□ 0.48
CDRT1-206ENST00000571263 ARAP3Q8WWN8 1544 aa18.08■□□□□ 0.48
CDRT1-206ENST00000571263 PLCH2O75038 1416 aa18.07■□□□□ 0.48
CDRT1-206ENST00000571263 TCOF1Q13428 1488 aaKnown RBP18.07■□□□□ 0.48
CDRT1-206ENST00000571263 EFCAB2Q5VUJ9 269 aa18.06■□□□□ 0.48
CDRT1-206ENST00000571263 PCGF6Q9BYE7 350 aa18.06■□□□□ 0.48
CDRT1-206ENST00000571263 GLI2P10070 1586 aa18.05■□□□□ 0.48
CDRT1-206ENST00000571263 FAM50AQ14320 339 aaKnown RBP18.05■□□□□ 0.48
CDRT1-206ENST00000571263 PTPN23Q9H3S7 1636 aa18.05■□□□□ 0.48
CDRT1-206ENST00000571263 CDC42BPAQ5VT25 1732 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms