RNA–Protein interactions for RNA: ENST00000570273.5

HERPUD1-219, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 1 (best)

Gene HERPUD1, Length 1,425 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-219ENST00000570273 OSCARQ8IYS5 282 aa24.89■■□□□ 1.58
HERPUD1-219ENST00000570273 CTTNBP2Q8WZ74 1663 aa24.84■■□□□ 1.57
HERPUD1-219ENST00000570273 NUP160Q12769 1436 aa24.82■■□□□ 1.56
HERPUD1-219ENST00000570273 CEP170Q5SW79 1584 aa24.81■■□□□ 1.56
HERPUD1-219ENST00000570273 CEP162Q5TB80 1403 aa24.79■■□□□ 1.56
HERPUD1-219ENST00000570273 KIAA0586Q9BVV6 1533 aa24.75■■□□□ 1.55
HERPUD1-219ENST00000570273 IQGAP2Q13576 1575 aa24.75■■□□□ 1.55
HERPUD1-219ENST00000570273 CLASP1Q7Z460 1538 aa24.75■■□□□ 1.55
HERPUD1-219ENST00000570273 RANGAP1P46060 587 aaPredicted RBP24.74■■□□□ 1.55
HERPUD1-219ENST00000570273 CLIP1P30622 1438 aa24.72■■□□□ 1.55
HERPUD1-219ENST00000570273 UGGT2Q9NYU1 1516 aa24.62■■□□□ 1.53
HERPUD1-219ENST00000570273 EFCAB5A4FU69 1503 aa24.61■■□□□ 1.53
HERPUD1-219ENST00000570273 ARHGAP35Q9NRY4 1499 aa24.6■■□□□ 1.53
HERPUD1-219ENST00000570273 RIMBP3CA6NJZ7 1639 aa24.58■■□□□ 1.53
HERPUD1-219ENST00000570273 RIMBP3BA6NNM3 1639 aa24.58■■□□□ 1.53
HERPUD1-219ENST00000570273 RIMBP3Q9UFD9 1639 aa24.58■■□□□ 1.53
HERPUD1-219ENST00000570273 ARHGEF11O15085 1522 aa24.58■■□□□ 1.53
HERPUD1-219ENST00000570273 SAMD9Q5K651 1589 aa24.57■■□□□ 1.52
HERPUD1-219ENST00000570273 JPH4Q96JJ6 628 aa24.55■■□□□ 1.52
HERPUD1-219ENST00000570273 ARAP1Q96P48 1450 aa24.53■■□□□ 1.52
HERPUD1-219ENST00000570273 SHROOM2Q13796 1616 aa24.53■■□□□ 1.52
HERPUD1-219ENST00000570273 FHOD3Q2V2M9 1422 aa24.51■■□□□ 1.51
HERPUD1-219ENST00000570273 KIAA0556O60303 1618 aa24.51■■□□□ 1.51
HERPUD1-219ENST00000570273 P3H3Q8IVL6 736 aa24.51■■□□□ 1.51
HERPUD1-219ENST00000570273 DISP1Q96F81 1524 aa24.51■■□□□ 1.51
HERPUD1-219ENST00000570273 CARMIL2Q6F5E8 1435 aa24.48■■□□□ 1.51
HERPUD1-219ENST00000570273 PRG4Q92954 1404 aaPredicted RBP24.48■■□□□ 1.51
HERPUD1-219ENST00000570273 VPS8Q8N3P4 1428 aa24.42■■□□□ 1.5
HERPUD1-219ENST00000570273 ERCC6L2Q5T890 1561 aa24.38■■□□□ 1.49
HERPUD1-219ENST00000570273 FMN1Q68DA7 1419 aa24.37■■□□□ 1.49
HERPUD1-219ENST00000570273 TTBK1Q5TCY1 1321 aaPredicted RBP24.34■■□□□ 1.49
HERPUD1-219ENST00000570273 PCF11O94913 1555 aaKnown RBP24.3■■□□□ 1.48
HERPUD1-219ENST00000570273 PTPRGP23470 1445 aa24.27■■□□□ 1.48
HERPUD1-219ENST00000570273 CASKIN1Q8WXD9 1431 aa24.26■■□□□ 1.47
HERPUD1-219ENST00000570273 FYCO1Q9BQS8 1478 aa24.25■■□□□ 1.47
HERPUD1-219ENST00000570273 CYB5RLQ6IPT4 315 aa24.22■■□□□ 1.47
HERPUD1-219ENST00000570273 ATP1B4Q9UN42 357 aaPredicted RBP24.2■■□□□ 1.46
HERPUD1-219ENST00000570273 HECW1Q76N89 1606 aa24.2■■□□□ 1.46
HERPUD1-219ENST00000570273 RAPGEF6Q8TEU7 1601 aa24.2■■□□□ 1.46
HERPUD1-219ENST00000570273 PLB1Q6P1J6 1458 aa24.19■■□□□ 1.46
HERPUD1-219ENST00000570273 ABCA8O94911 1581 aa24.18■■□□□ 1.46
HERPUD1-219ENST00000570273 APLP2Q06481 763 aa24.16■■□□□ 1.46
HERPUD1-219ENST00000570273 UACAQ9BZF9 1416 aa24.14■■□□□ 1.45
HERPUD1-219ENST00000570273 NUP153P49790 1475 aaKnown RBP24.12■■□□□ 1.45
HERPUD1-219ENST00000570273 CCDC18Q5T9S5 1454 aa24.1■■□□□ 1.45
HERPUD1-219ENST00000570273 ABCC2Q92887 1545 aa24.09■■□□□ 1.45
HERPUD1-219ENST00000570273 TIAM1Q13009 1591 aa24.08■■□□□ 1.45
HERPUD1-219ENST00000570273 CFAP43Q8NDM7 1665 aa24.08■■□□□ 1.45
HERPUD1-219ENST00000570273 EPRSP07814 1512 aaKnown RBP24.07■■□□□ 1.44
HERPUD1-219ENST00000570273 ARID3CA6NKF2 412 aa24.07■■□□□ 1.44
HERPUD1-219ENST00000570273 MAP3K1Q13233 1512 aa24.07■■□□□ 1.44
HERPUD1-219ENST00000570273 LRRIQ1Q96JM4 1722 aa24.06■■□□□ 1.44
HERPUD1-219ENST00000570273 CDK13Q14004 1512 aaKnown RBP24.06■■□□□ 1.44
HERPUD1-219ENST00000570273 UHRF1BP1LA0JNW5 1464 aa24.05■■□□□ 1.44
HERPUD1-219ENST00000570273 PPARGC1BQ86YN6 1023 aaKnown RBP24.01■■□□□ 1.43
HERPUD1-219ENST00000570273 ADCY10Q96PN6 1610 aa24■■□□□ 1.43
HERPUD1-219ENST00000570273 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.98■■□□□ 1.43
HERPUD1-219ENST00000570273 HNRNPUL2Q1KMD3 747 aaKnown RBP23.98■■□□□ 1.43
HERPUD1-219ENST00000570273 ATP10BO94823 1461 aa23.97■■□□□ 1.43
HERPUD1-219ENST00000570273 LRRC9Q6ZRR7 1453 aa23.96■■□□□ 1.43
HERPUD1-219ENST00000570273 KANK4Q5T7N3 995 aaPredicted RBP23.95■■□□□ 1.42
HERPUD1-219ENST00000570273 KDM5BQ9UGL1 1544 aa23.94■■□□□ 1.42
HERPUD1-219ENST00000570273 MTUS2Q5JR59 1369 aa23.94■■□□□ 1.42
HERPUD1-219ENST00000570273 EHBP1L1Q8N3D4 1523 aa23.92■■□□□ 1.42
HERPUD1-219ENST00000570273 ZCCHC11Q5TAX3 1644 aaKnown RBP23.91■■□□□ 1.42
HERPUD1-219ENST00000570273 MAGI3Q5TCQ9 1506 aa23.91■■□□□ 1.42
HERPUD1-219ENST00000570273 CDK11AQ9UQ88 783 aaPredicted RBP23.91■■□□□ 1.42
HERPUD1-219ENST00000570273 TROQ12816 1431 aaPredicted RBP23.85■■□□□ 1.41
HERPUD1-219ENST00000570273 PLEKHD1A6NEE1 506 aa23.84■■□□□ 1.41
HERPUD1-219ENST00000570273 NPM1P06748 294 aaKnown RBP eCLIP23.84■■□□□ 1.41
HERPUD1-219ENST00000570273 MAPKBP1O60336 1514 aa23.83■■□□□ 1.4
HERPUD1-219ENST00000570273 SUPT6HQ7KZ85 1726 aaKnown RBP23.8■■□□□ 1.4
HERPUD1-219ENST00000570273 NCOA2Q15596 1464 aa23.77■■□□□ 1.4
HERPUD1-219ENST00000570273 KIF14Q15058 1648 aa23.76■■□□□ 1.39
HERPUD1-219ENST00000570273 ASXL2Q76L83 1435 aa23.75■■□□□ 1.39
HERPUD1-219ENST00000570273 WDR7Q9Y4E6 1490 aa23.75■■□□□ 1.39
HERPUD1-219ENST00000570273 PHLDB1Q86UU1 1377 aa23.71■■□□□ 1.39
HERPUD1-219ENST00000570273 KIF13AQ9H1H9 1805 aa23.71■■□□□ 1.39
HERPUD1-219ENST00000570273 ABCC10Q5T3U5 1492 aa23.67■■□□□ 1.38
HERPUD1-219ENST00000570273 KCNH8Q96L42 1107 aa23.67■■□□□ 1.38
HERPUD1-219ENST00000570273 DIP2BQ9P265 1576 aa23.66■■□□□ 1.38
HERPUD1-219ENST00000570273 CCNB3Q8WWL7 1395 aa23.65■■□□□ 1.38
HERPUD1-219ENST00000570273 MYOM3Q5VTT5 1437 aa23.65■■□□□ 1.38
HERPUD1-219ENST00000570273 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.62■■□□□ 1.376e-6■■■■□ 21.5
HERPUD1-219ENST00000570273 TRHP20396 242 aaPredicted RBP23.62■■□□□ 1.37
HERPUD1-219ENST00000570273 TTC37Q6PGP7 1564 aa23.62■■□□□ 1.37
HERPUD1-219ENST00000570273 TRIM26Q12899 539 aaPredicted RBP23.6■■□□□ 1.37
HERPUD1-219ENST00000570273 FGD6Q6ZV73 1430 aa23.6■■□□□ 1.37
HERPUD1-219ENST00000570273 RRBP1Q9P2E9 1410 aaKnown RBP23.59■■□□□ 1.37
HERPUD1-219ENST00000570273 ITSN2Q9NZM3 1697 aa23.59■■□□□ 1.37
HERPUD1-219ENST00000570273 GPATCH8Q9UKJ3 1502 aaKnown RBP23.58■■□□□ 1.37
HERPUD1-219ENST00000570273 GLI2P10070 1586 aa23.56■■□□□ 1.36
HERPUD1-219ENST00000570273 ABCA9Q8IUA7 1624 aa23.55■■□□□ 1.36
HERPUD1-219ENST00000570273 MIA2Q96PC5 1412 aa23.54■■□□□ 1.36
HERPUD1-219ENST00000570273 CDC42BPAQ5VT25 1732 aa23.54■■□□□ 1.36
HERPUD1-219ENST00000570273 PREX2Q70Z35 1606 aa23.53■■□□□ 1.36
HERPUD1-219ENST00000570273 MYO5CQ9NQX4 1742 aa23.52■■□□□ 1.36
HERPUD1-219ENST00000570273 CFDP1Q9UEE9 299 aaPredicted RBP23.51■■□□□ 1.35
HERPUD1-219ENST00000570273 PTPN23Q9H3S7 1636 aa23.51■■□□□ 1.35
HERPUD1-219ENST00000570273 FAM69CQ0P6D2 419 aa23.5■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms