RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 CTTNBP2Q8WZ74 1663 aa15.48■□□□□ 0.07
VPS35-211ENST00000569950 KIAA0586Q9BVV6 1533 aa15.46■□□□□ 0.07
VPS35-211ENST00000569950 ERCC6L2Q5T890 1561 aa15.42■□□□□ 0.06
VPS35-211ENST00000569950 GOLGA3Q08378 1498 aa15.42■□□□□ 0.06
VPS35-211ENST00000569950 IQGAP2Q13576 1575 aa15.41■□□□□ 0.06
VPS35-211ENST00000569950 DNAJC5Q9H3Z4 198 aa15.38■□□□□ 0.05
VPS35-211ENST00000569950 UGGT2Q9NYU1 1516 aa15.38■□□□□ 0.05
VPS35-211ENST00000569950 SENP3Q9H4L4 574 aaPredicted RBP15.37■□□□□ 0.05
VPS35-211ENST00000569950 ARHGEF11O15085 1522 aa15.37■□□□□ 0.05
VPS35-211ENST00000569950 RIMBP3CA6NJZ7 1639 aa15.36■□□□□ 0.05
VPS35-211ENST00000569950 RIMBP3BA6NNM3 1639 aa15.36■□□□□ 0.05
VPS35-211ENST00000569950 RIMBP3Q9UFD9 1639 aa15.36■□□□□ 0.05
VPS35-211ENST00000569950 DISP1Q96F81 1524 aa15.34■□□□□ 0.05
VPS35-211ENST00000569950 SAMD9Q5K651 1589 aa15.32■□□□□ 0.04
VPS35-211ENST00000569950 JPH4Q96JJ6 628 aa15.32■□□□□ 0.04
VPS35-211ENST00000569950 PRG4Q92954 1404 aaPredicted RBP15.31■□□□□ 0.04
VPS35-211ENST00000569950 KIAA0556O60303 1618 aa15.3■□□□□ 0.04
VPS35-211ENST00000569950 EHMT2Q96KQ7 1210 aa15.3■□□□□ 0.04
VPS35-211ENST00000569950 ARAP1Q96P48 1450 aa15.28■□□□□ 0.04
VPS35-211ENST00000569950 TNIKQ9UKE5 1360 aa15.28■□□□□ 0.04
VPS35-211ENST00000569950 LOC105371045A0A1W2PR82 267 aa15.28■□□□□ 0.04
VPS35-211ENST00000569950 ARHGAP35Q9NRY4 1499 aa15.23■□□□□ 0.03
VPS35-211ENST00000569950 UBTFP17480 764 aaKnown RBP15.23■□□□□ 0.03
VPS35-211ENST00000569950 EFCAB5A4FU69 1503 aa15.22■□□□□ 0.03
VPS35-211ENST00000569950 CARMIL2Q6F5E8 1435 aa15.17■□□□□ 0.02
VPS35-211ENST00000569950 PHF23Q9BUL5 403 aaPredicted RBP15.17■□□□□ 0.02
VPS35-211ENST00000569950 FHOD3Q2V2M9 1422 aa15.16■□□□□ 0.02
VPS35-211ENST00000569950 CEP162Q5TB80 1403 aa15.16■□□□□ 0.02
VPS35-211ENST00000569950 ADCY10Q96PN6 1610 aa15.14■□□□□ 0.01
VPS35-211ENST00000569950 CLIP1P30622 1438 aa15.14■□□□□ 0.01
VPS35-211ENST00000569950 ABCA8O94911 1581 aa15.14■□□□□ 0.01
VPS35-211ENST00000569950 PTPRGP23470 1445 aa15.12■□□□□ 0.01
VPS35-211ENST00000569950 RANGAP1P46060 587 aaPredicted RBP15.11■□□□□ 0.01
VPS35-211ENST00000569950 P3H3Q8IVL6 736 aa15.11■□□□□ 0.01
VPS35-211ENST00000569950 PLB1Q6P1J6 1458 aa15.1■□□□□ 0.01
VPS35-211ENST00000569950 LRRIQ1Q96JM4 1722 aa15.09■□□□□ 0.01
VPS35-211ENST00000569950 UHRF1BP1LA0JNW5 1464 aa15.08■□□□□ 0.01
VPS35-211ENST00000569950 CYB5RLQ6IPT4 315 aa15.08■□□□□ 0
VPS35-211ENST00000569950 ABCC2Q92887 1545 aa15.07■□□□□ 0
VPS35-211ENST00000569950 RAPGEF6Q8TEU7 1601 aa15.06■□□□□ 0
VPS35-211ENST00000569950 UACAQ9BZF9 1416 aa15.06■□□□□ 0
VPS35-211ENST00000569950 PCF11O94913 1555 aaKnown RBP15.04■□□□□ -0
VPS35-211ENST00000569950 NUP153P49790 1475 aaKnown RBP15.04■□□□□ -0
VPS35-211ENST00000569950 KDM5BQ9UGL1 1544 aa15.02■□□□□ -0
VPS35-211ENST00000569950 FMN1Q68DA7 1419 aa15.01□□□□□ -0.01
VPS35-211ENST00000569950 TTBK1Q5TCY1 1321 aaPredicted RBP15.01□□□□□ -0.01
VPS35-211ENST00000569950 ZCCHC11Q5TAX3 1644 aaKnown RBP15.01□□□□□ -0.01
VPS35-211ENST00000569950 CASKIN1Q8WXD9 1431 aa14.99□□□□□ -0.01
VPS35-211ENST00000569950 ATP10BO94823 1461 aa14.97□□□□□ -0.01
VPS35-211ENST00000569950 FYCO1Q9BQS8 1478 aa14.96□□□□□ -0.01
VPS35-211ENST00000569950 HECW1Q76N89 1606 aa14.96□□□□□ -0.01
VPS35-211ENST00000569950 MAPKBP1O60336 1514 aa14.96□□□□□ -0.02
VPS35-211ENST00000569950 VPS8Q8N3P4 1428 aa14.95□□□□□ -0.02
VPS35-211ENST00000569950 CDK13Q14004 1512 aaKnown RBP14.95□□□□□ -0.02
VPS35-211ENST00000569950 EPRSP07814 1512 aaKnown RBP14.94□□□□□ -0.02
VPS35-211ENST00000569950 MAGI3Q5TCQ9 1506 aa14.91□□□□□ -0.02
VPS35-211ENST00000569950 KIF13AQ9H1H9 1805 aa14.9□□□□□ -0.02
VPS35-211ENST00000569950 CFAP43Q8NDM7 1665 aa14.9□□□□□ -0.02
VPS35-211ENST00000569950 ASXL2Q76L83 1435 aa14.88□□□□□ -0.03
VPS35-211ENST00000569950 ARID3CA6NKF2 412 aa14.87□□□□□ -0.03
VPS35-211ENST00000569950 DIP2BQ9P265 1576 aa14.86□□□□□ -0.03
VPS35-211ENST00000569950 CCDC18Q5T9S5 1454 aa14.86□□□□□ -0.03
VPS35-211ENST00000569950 WDR7Q9Y4E6 1490 aa14.85□□□□□ -0.03
VPS35-211ENST00000569950 TIAM1Q13009 1591 aa14.85□□□□□ -0.03
VPS35-211ENST00000569950 ABCC10Q5T3U5 1492 aa14.82□□□□□ -0.04
VPS35-211ENST00000569950 MAP3K1Q13233 1512 aa14.82□□□□□ -0.04
VPS35-211ENST00000569950 GLI2P10070 1586 aa14.81□□□□□ -0.04
VPS35-211ENST00000569950 KIF14Q15058 1648 aa14.81□□□□□ -0.04
VPS35-211ENST00000569950 PPRC1Q5VV67 1664 aaKnown RBP14.79□□□□□ -0.04
VPS35-211ENST00000569950 MAP3K4Q9Y6R4 1608 aa14.79□□□□□ -0.04
VPS35-211ENST00000569950 ABCA9Q8IUA7 1624 aa14.78□□□□□ -0.04
VPS35-211ENST00000569950 TROQ12816 1431 aaPredicted RBP14.78□□□□□ -0.04
VPS35-211ENST00000569950 NPM1P06748 294 aaKnown RBP eCLIP14.78□□□□□ -0.04
VPS35-211ENST00000569950 TTC37Q6PGP7 1564 aa14.77□□□□□ -0.04
VPS35-211ENST00000569950 ATP1B4Q9UN42 357 aaPredicted RBP14.77□□□□□ -0.05
VPS35-211ENST00000569950 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.76□□□□□ -0.05
VPS35-211ENST00000569950 LRRC9Q6ZRR7 1453 aa14.76□□□□□ -0.05
VPS35-211ENST00000569950 EHBP1L1Q8N3D4 1523 aa14.75□□□□□ -0.05
VPS35-211ENST00000569950 KANK4Q5T7N3 995 aaPredicted RBP14.74□□□□□ -0.05
VPS35-211ENST00000569950 CDC42BPAQ5VT25 1732 aa14.72□□□□□ -0.05
VPS35-211ENST00000569950 PLEKHD1A6NEE1 506 aa14.71□□□□□ -0.05
VPS35-211ENST00000569950 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.71□□□□□ -0.05
VPS35-211ENST00000569950 HNRNPUL2Q1KMD3 747 aaKnown RBP14.71□□□□□ -0.05
VPS35-211ENST00000569950 TSPOAP1O95153 1857 aa14.69□□□□□ -0.06
VPS35-211ENST00000569950 CDC42BPBQ9Y5S2 1711 aa14.69□□□□□ -0.06
VPS35-211ENST00000569950 SUPT6HQ7KZ85 1726 aaKnown RBP14.69□□□□□ -0.06
VPS35-211ENST00000569950 FAM69CQ0P6D2 419 aa14.68□□□□□ -0.06
VPS35-211ENST00000569950 KCNH8Q96L42 1107 aa14.68□□□□□ -0.06
VPS35-211ENST00000569950 MYO5CQ9NQX4 1742 aa14.68□□□□□ -0.06
VPS35-211ENST00000569950 PREX2Q70Z35 1606 aa14.67□□□□□ -0.06
VPS35-211ENST00000569950 NCOA2Q15596 1464 aa14.67□□□□□ -0.06
VPS35-211ENST00000569950 MTUS2Q5JR59 1369 aa14.66□□□□□ -0.06
VPS35-211ENST00000569950 CDK11AQ9UQ88 783 aaPredicted RBP14.66□□□□□ -0.06
VPS35-211ENST00000569950 ARAP3Q8WWN8 1544 aa14.65□□□□□ -0.06
VPS35-211ENST00000569950 GPATCH8Q9UKJ3 1502 aaKnown RBP14.65□□□□□ -0.06
VPS35-211ENST00000569950 CD109Q6YHK3 1445 aa14.64□□□□□ -0.07
VPS35-211ENST00000569950 PLCH2O75038 1416 aa14.63□□□□□ -0.07
VPS35-211ENST00000569950 TRHP20396 242 aaPredicted RBP14.6□□□□□ -0.07
VPS35-211ENST00000569950 ITSN2Q9NZM3 1697 aa14.6□□□□□ -0.07
VPS35-211ENST00000569950 PHLDB1Q86UU1 1377 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms