RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 SENP3-EIF4A1A0A087X0R7 540 aa15.71■□□□□ 0.11
CLN3-238ENST00000569430 SYNJ1O43426 1573 aa15.7■□□□□ 0.1
CLN3-238ENST00000569430 ANP32AP39687 249 aaKnown RBP15.69■□□□□ 0.1
CLN3-238ENST00000569430 VPS8Q8N3P4 1428 aa15.69■□□□□ 0.1
CLN3-238ENST00000569430 ARID3CA6NKF2 412 aa15.65■□□□□ 0.1
CLN3-238ENST00000569430 MRS2Q9HD23 443 aa15.64■□□□□ 0.09
CLN3-238ENST00000569430 DHX57Q6P158 1386 aaKnown RBP15.63■□□□□ 0.09
CLN3-238ENST00000569430 B4GALNT3Q6L9W6 998 aa15.62■□□□□ 0.09
CLN3-238ENST00000569430 CCDC136Q96JN2 1154 aa15.61■□□□□ 0.09
CLN3-238ENST00000569430 CHIC2Q9UKJ5 165 aa15.61■□□□□ 0.09
CLN3-238ENST00000569430 CCNB3Q8WWL7 1395 aa15.61■□□□□ 0.09
CLN3-238ENST00000569430 SALL2Q9Y467 1007 aaPredicted RBP15.59■□□□□ 0.09
CLN3-238ENST00000569430 ZBTB47Q9UFB7 747 aaPredicted RBP15.58■□□□□ 0.08
CLN3-238ENST00000569430 MYT1LQ9UL68 1186 aa15.55■□□□□ 0.08
CLN3-238ENST00000569430 DEKP35659 375 aaKnown RBP15.54■□□□□ 0.08
CLN3-238ENST00000569430 RAB3GAP2Q9H2M9 1393 aa15.53■□□□□ 0.08
CLN3-238ENST00000569430 EIF5BO60841 1220 aaKnown RBP15.52■□□□□ 0.07
CLN3-238ENST00000569430 PPP4R2Q9NY27 417 aa15.52■□□□□ 0.07
CLN3-238ENST00000569430 CCER2I3L3R5 266 aa15.51■□□□□ 0.07
CLN3-238ENST00000569430 RTN4Q9NQC3 1192 aaKnown RBP15.5■□□□□ 0.07
CLN3-238ENST00000569430 RRP7BPQ9NSQ0 103 aa15.5■□□□□ 0.07
CLN3-238ENST00000569430 EIF4G2P78344 907 aaKnown RBP eCLIP15.49■□□□□ 0.071e-9■■■■□ 22.4
CLN3-238ENST00000569430 NOP58Q9Y2X3 529 aaKnown RBP15.46■□□□□ 0.07
CLN3-238ENST00000569430 PPP1R15AO75807 674 aaPredicted RBP15.44■□□□□ 0.06
CLN3-238ENST00000569430 TMC1Q8TDI8 760 aa15.43■□□□□ 0.06
CLN3-238ENST00000569430 KIF21BO75037 1637 aa15.43■□□□□ 0.06
CLN3-238ENST00000569430 SETD5Q9C0A6 1442 aa15.43■□□□□ 0.06
CLN3-238ENST00000569430 MTUS2Q5JR59 1369 aa15.4■□□□□ 0.06
CLN3-238ENST00000569430 LAS1LQ9Y4W2 734 aaKnown RBP15.4■□□□□ 0.06
CLN3-238ENST00000569430 CUX2O14529 1486 aa15.39■□□□□ 0.05
CLN3-238ENST00000569430 KIF27Q86VH2 1401 aa15.39■□□□□ 0.05
CLN3-238ENST00000569430 ARAP1Q96P48 1450 aa15.38■□□□□ 0.05
CLN3-238ENST00000569430 DNAJC5BQ9UF47 199 aa15.38■□□□□ 0.05
CLN3-238ENST00000569430 TIMELESSQ9UNS1 1208 aa15.35■□□□□ 0.05
CLN3-238ENST00000569430 CUX1P39880 1505 aa15.35■□□□□ 0.05
CLN3-238ENST00000569430 HSPA5P11021 654 aaKnown RBP15.35■□□□□ 0.05
CLN3-238ENST00000569430 ZNF777Q9ULD5 760 aaPredicted RBP15.34■□□□□ 0.05
CLN3-238ENST00000569430 PEG3Q9GZU2 1588 aa15.33■□□□□ 0.04
CLN3-238ENST00000569430 NEFMP07197 916 aa15.3■□□□□ 0.04
CLN3-238ENST00000569430 TOP2BQ02880 1626 aa15.29■□□□□ 0.04
CLN3-238ENST00000569430 KDM2AQ9Y2K7 1162 aa15.29■□□□□ 0.04
CLN3-238ENST00000569430 MSH5O43196 834 aa15.28■□□□□ 0.04
CLN3-238ENST00000569430 FOXD1Q16676 465 aa15.28■□□□□ 0.04
CLN3-238ENST00000569430 FANCIQ9NVI1 1328 aa15.28■□□□□ 0.04
CLN3-238ENST00000569430 CARMIL1Q5VZK9 1371 aa15.28■□□□□ 0.04
CLN3-238ENST00000569430 SLC4A1APQ9BWU0 796 aaKnown RBP15.27■□□□□ 0.04
CLN3-238ENST00000569430 PRXQ9BXM0 1461 aa15.27■□□□□ 0.04
CLN3-238ENST00000569430 IGF1RP08069 1367 aa15.26■□□□□ 0.03
CLN3-238ENST00000569430 ARXQ96QS3 562 aa15.26■□□□□ 0.03
CLN3-238ENST00000569430 NCAPD3P42695 1498 aa15.25■□□□□ 0.03
CLN3-238ENST00000569430 RAD54L2Q9Y4B4 1467 aa15.23■□□□□ 0.03
CLN3-238ENST00000569430 ARHGAP35Q9NRY4 1499 aa15.23■□□□□ 0.03
CLN3-238ENST00000569430 ERICH6BQ5W0A0 696 aa15.21■□□□□ 0.03
CLN3-238ENST00000569430 NESP48681 1621 aa15.21■□□□□ 0.03
CLN3-238ENST00000569430 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.21■□□□□ 0.03
CLN3-238ENST00000569430 TDRD9Q8NDG6 1382 aaKnown RBP15.21■□□□□ 0.03
CLN3-238ENST00000569430 CADPSQ9ULU8 1353 aa15.21■□□□□ 0.03
CLN3-238ENST00000569430 FHOD3Q2V2M9 1422 aa15.21■□□□□ 0.03
CLN3-238ENST00000569430 CFTRP13569 1480 aa15.2■□□□□ 0.02
CLN3-238ENST00000569430 FGD5Q6ZNL6 1462 aa15.19■□□□□ 0.02
CLN3-238ENST00000569430 IPO9Q96P70 1041 aaKnown RBP15.18■□□□□ 0.02
CLN3-238ENST00000569430 CANXP27824 592 aaKnown RBP15.17■□□□□ 0.02
CLN3-238ENST00000569430 PHLDB1Q86UU1 1377 aa15.16■□□□□ 0.02
CLN3-238ENST00000569430 L3MBTL2Q969R5 705 aa15.16■□□□□ 0.02
CLN3-238ENST00000569430 FHAD1B1AJZ9 1412 aa15.14■□□□□ 0.01
CLN3-238ENST00000569430 PAK3O75914 559 aaPredicted RBP15.14■□□□□ 0.01
CLN3-238ENST00000569430 PRKRIP1Q9H875 184 aaPredicted RBP15.14■□□□□ 0.01
CLN3-238ENST00000569430 PPM1GO15355 546 aaPredicted RBP15.13■□□□□ 0.01
CLN3-238ENST00000569430 FBLN2P98095 1184 aa15.12■□□□□ 0.01
CLN3-238ENST00000569430 CCDC184Q52MB2 194 aa15.11■□□□□ 0.01
CLN3-238ENST00000569430 FANCD2Q9BXW9 1451 aa15.09■□□□□ 0.01
CLN3-238ENST00000569430 RRBP1Q9P2E9 1410 aaKnown RBP15.09■□□□□ 0.01
CLN3-238ENST00000569430 WDR97A6NE52 1622 aa15.09■□□□□ 0.01
CLN3-238ENST00000569430 RGS3P49796 1198 aa15.09■□□□□ 0.01
CLN3-238ENST00000569430 CARD11Q9BXL7 1154 aa15.09■□□□□ 0.01
CLN3-238ENST00000569430 NUDCQ9Y266 331 aa15.09■□□□□ 0.01
CLN3-238ENST00000569430 DDRGK1Q96HY6 314 aa15.08■□□□□ 0.01
CLN3-238ENST00000569430 BIVM-ERCC5R4GMW8 1640 aa15.08■□□□□ 0
CLN3-238ENST00000569430 MPHOSPH9Q99550 1183 aa15.08■□□□□ 0
CLN3-238ENST00000569430 ERICH3Q5RHP9 1530 aa15.08■□□□□ 0
CLN3-238ENST00000569430 RGL3Q3MIN7 710 aa15.07■□□□□ 0
CLN3-238ENST00000569430 WASHC2AQ641Q2 1341 aa15.06■□□□□ 0
CLN3-238ENST00000569430 HMGXB3Q12766 1538 aa15.06■□□□□ 0
CLN3-238ENST00000569430 ANO8Q9HCE9 1232 aaPredicted RBP15.06■□□□□ 0
CLN3-238ENST00000569430 ZBED9Q6R2W3 1325 aa15.05■□□□□ -0
CLN3-238ENST00000569430 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.04■□□□□ -0
CLN3-238ENST00000569430 CC2D2AQ9P2K1 1620 aa15.03■□□□□ -0
CLN3-238ENST00000569430 WDR43Q15061 677 aaKnown RBP eCLIP15.02■□□□□ -0
CLN3-238ENST00000569430 RCAN3Q9UKA8 241 aa15.02■□□□□ -0
CLN3-238ENST00000569430 SLC4A3P48751 1232 aa15.02□□□□□ -0.01
CLN3-238ENST00000569430 CC2D1BQ5T0F9 858 aaKnown RBP15.02□□□□□ -0.01
CLN3-238ENST00000569430 IL27Q8NEV9 243 aa15.01□□□□□ -0.01
CLN3-238ENST00000569430 EXOC6Q8TAG9 804 aa15□□□□□ -0.01
CLN3-238ENST00000569430 TCERG1O14776 1098 aaKnown RBP14.99□□□□□ -0.01
CLN3-238ENST00000569430 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.99□□□□□ -0.01
CLN3-238ENST00000569430 LRRC9Q6ZRR7 1453 aa14.99□□□□□ -0.01
CLN3-238ENST00000569430 FMN1Q68DA7 1419 aa14.98□□□□□ -0.01
CLN3-238ENST00000569430 PDE4AP27815 886 aa14.98□□□□□ -0.01
CLN3-238ENST00000569430 UPF2Q9HAU5 1272 aaKnown RBP14.97□□□□□ -0.01
CLN3-238ENST00000569430 CCDC18Q5T9S5 1454 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms