RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 BCANQ96GW7 911 aa15.65■□□□□ 0.1
CLK3-226ENST00000569406 ERICH6BQ5W0A0 696 aa15.61■□□□□ 0.09
CLK3-226ENST00000569406 KIF27Q86VH2 1401 aa15.59■□□□□ 0.09
CLK3-226ENST00000569406 MSH5O43196 834 aa15.58■□□□□ 0.08
CLK3-226ENST00000569406 CLSPNQ9HAW4 1339 aa15.57■□□□□ 0.08
CLK3-226ENST00000569406 FGD5Q6ZNL6 1462 aa15.56■□□□□ 0.08
CLK3-226ENST00000569406 IGF1RP08069 1367 aa15.56■□□□□ 0.08
CLK3-226ENST00000569406 MYT1LQ9UL68 1186 aa15.55■□□□□ 0.08
CLK3-226ENST00000569406 NESP48681 1621 aa15.53■□□□□ 0.08
CLK3-226ENST00000569406 ARHGAP35Q9NRY4 1499 aa15.53■□□□□ 0.08
CLK3-226ENST00000569406 ZNF316A6NFI3 1004 aaPredicted RBP15.53■□□□□ 0.08
CLK3-226ENST00000569406 FANCD2Q9BXW9 1451 aa15.52■□□□□ 0.07
CLK3-226ENST00000569406 CUX2O14529 1486 aa15.51■□□□□ 0.07
CLK3-226ENST00000569406 IL27Q8NEV9 243 aa15.49■□□□□ 0.07
CLK3-226ENST00000569406 DNMBPQ6XZF7 1577 aa15.47■□□□□ 0.07
CLK3-226ENST00000569406 DNAJC5BQ9UF47 199 aa15.47■□□□□ 0.07
CLK3-226ENST00000569406 WDR97A6NE52 1622 aa15.45■□□□□ 0.06
CLK3-226ENST00000569406 TOPBP1Q92547 1522 aa15.45■□□□□ 0.06
CLK3-226ENST00000569406 RANGAP1P46060 587 aaPredicted RBP15.44■□□□□ 0.06
CLK3-226ENST00000569406 KANK4Q5T7N3 995 aaPredicted RBP15.44■□□□□ 0.06
CLK3-226ENST00000569406 POLA1P09884 1462 aaPredicted RBP15.44■□□□□ 0.06
CLK3-226ENST00000569406 RAD54L2Q9Y4B4 1467 aa15.43■□□□□ 0.06
CLK3-226ENST00000569406 ABCA10Q8WWZ4 1543 aa15.43■□□□□ 0.06
CLK3-226ENST00000569406 URB2Q14146 1524 aaKnown RBP15.41■□□□□ 0.06
CLK3-226ENST00000569406 NBR1Q14596 966 aa15.4■□□□□ 0.06
CLK3-226ENST00000569406 LAMC3Q9Y6N6 1575 aa15.39■□□□□ 0.05
CLK3-226ENST00000569406 CARMIL1Q5VZK9 1371 aa15.39■□□□□ 0.05
CLK3-226ENST00000569406 RRBP1Q9P2E9 1410 aaKnown RBP15.36■□□□□ 0.05
CLK3-226ENST00000569406 ITGAEP38570 1179 aa15.34■□□□□ 0.05
CLK3-226ENST00000569406 A0A0U1RQG5 324 aaPredicted RBP15.34■□□□□ 0.05
CLK3-226ENST00000569406 ABCA5Q8WWZ7 1642 aa15.33■□□□□ 0.04
CLK3-226ENST00000569406 KIF21AQ7Z4S6 1674 aa15.33■□□□□ 0.04
CLK3-226ENST00000569406 FKBP8Q14318 412 aa15.33■□□□□ 0.04
CLK3-226ENST00000569406 HNRNPUL2Q1KMD3 747 aaKnown RBP15.33■□□□□ 0.04
CLK3-226ENST00000569406 MAP3K1Q13233 1512 aa15.31■□□□□ 0.04
CLK3-226ENST00000569406 TIAM1Q13009 1591 aa15.31■□□□□ 0.04
CLK3-226ENST00000569406 NEFLP07196 543 aa15.31■□□□□ 0.04
CLK3-226ENST00000569406 CUL7Q14999 1698 aa15.29■□□□□ 0.04
CLK3-226ENST00000569406 TIMELESSQ9UNS1 1208 aa15.29■□□□□ 0.04
CLK3-226ENST00000569406 CTTNBP2Q8WZ74 1663 aa15.28■□□□□ 0.04
CLK3-226ENST00000569406 CFAP43Q8NDM7 1665 aa15.27■□□□□ 0.04
CLK3-226ENST00000569406 PCF11O94913 1555 aaKnown RBP15.27■□□□□ 0.04
CLK3-226ENST00000569406 TARBP1Q13395 1621 aaKnown RBP15.26■□□□□ 0.03
CLK3-226ENST00000569406 ZMYND15Q9H091 742 aa15.26■□□□□ 0.03
CLK3-226ENST00000569406 VSIG10Q8N0Z9 540 aa15.26■□□□□ 0.03
CLK3-226ENST00000569406 LRRIQ1Q96JM4 1722 aa15.24■□□□□ 0.03
CLK3-226ENST00000569406 GLIPR1L2Q4G1C9 344 aa15.24■□□□□ 0.03
CLK3-226ENST00000569406 AEBP2Q6ZN18 517 aaPredicted RBP15.23■□□□□ 0.03
CLK3-226ENST00000569406 DHX57Q6P158 1386 aaKnown RBP15.23■□□□□ 0.03
CLK3-226ENST00000569406 FANCIQ9NVI1 1328 aa15.22■□□□□ 0.03
CLK3-226ENST00000569406 LRRC9Q6ZRR7 1453 aa15.22■□□□□ 0.03
CLK3-226ENST00000569406 PDE4CQ08493 712 aa15.21■□□□□ 0.03
CLK3-226ENST00000569406 SAMD9Q5K651 1589 aa15.19■□□□□ 0.02
CLK3-226ENST00000569406 RTL5Q5HYW3 569 aaPredicted RBP15.19■□□□□ 0.02
CLK3-226ENST00000569406 CCNB3Q8WWL7 1395 aa15.18■□□□□ 0.02
CLK3-226ENST00000569406 EFCAB5A4FU69 1503 aa15.18■□□□□ 0.02
CLK3-226ENST00000569406 SNAPC4Q5SXM2 1469 aa15.18■□□□□ 0.02
CLK3-226ENST00000569406 PHLDB1Q86UU1 1377 aa15.18■□□□□ 0.02
CLK3-226ENST00000569406 FHOD3Q2V2M9 1422 aa15.18■□□□□ 0.02
CLK3-226ENST00000569406 TDRD9Q8NDG6 1382 aaKnown RBP15.17■□□□□ 0.02
CLK3-226ENST00000569406 PDS5BQ9NTI5 1447 aa15.16■□□□□ 0.02
CLK3-226ENST00000569406 AQRO60306 1485 aaKnown RBP eCLIP15.15■□□□□ 0.021e-7■■■■■ 34.3
CLK3-226ENST00000569406 GAPVD1Q14C86 1478 aa15.15■□□□□ 0.02
CLK3-226ENST00000569406 FYCO1Q9BQS8 1478 aa15.14■□□□□ 0.01
CLK3-226ENST00000569406 FHAD1B1AJZ9 1412 aa15.12■□□□□ 0.01
CLK3-226ENST00000569406 CASKIN1Q8WXD9 1431 aa15.12■□□□□ 0.01
CLK3-226ENST00000569406 PBRM1Q86U86 1689 aa15.12■□□□□ 0.01
CLK3-226ENST00000569406 MAPKBP1O60336 1514 aa15.11■□□□□ 0.01
CLK3-226ENST00000569406 PDIA4P13667 645 aaKnown RBP15.1■□□□□ 0.01
CLK3-226ENST00000569406 P3H3Q8IVL6 736 aa15.09■□□□□ 0.01
CLK3-226ENST00000569406 CDK11AQ9UQ88 783 aaPredicted RBP15.07■□□□□ 0
CLK3-226ENST00000569406 GRIN2BQ13224 1484 aa15.06■□□□□ 0
CLK3-226ENST00000569406 BCL11BQ9C0K0 894 aaPredicted RBP15.05■□□□□ 0
CLK3-226ENST00000569406 FGD1P98174 961 aa15.05■□□□□ -0
CLK3-226ENST00000569406 ADAMTS12P58397 1594 aa15.04■□□□□ -0
CLK3-226ENST00000569406 RAB3GAP2Q9H2M9 1393 aa15.03■□□□□ -0
CLK3-226ENST00000569406 MAGI3Q5TCQ9 1506 aa15.03■□□□□ -0
CLK3-226ENST00000569406 RBM10P98175 930 aaKnown RBP15.03■□□□□ -0
CLK3-226ENST00000569406 NOP58Q9Y2X3 529 aaKnown RBP15.02■□□□□ -0
CLK3-226ENST00000569406 MRC2Q9UBG0 1479 aa15.01□□□□□ -0.01
CLK3-226ENST00000569406 WDR62O43379 1518 aa15.01□□□□□ -0.01
CLK3-226ENST00000569406 ARHGEF11O15085 1522 aa15□□□□□ -0.01
CLK3-226ENST00000569406 ZNF608Q9ULD9 1512 aaPredicted RBP15□□□□□ -0.01
CLK3-226ENST00000569406 FMN1Q68DA7 1419 aa14.99□□□□□ -0.01
CLK3-226ENST00000569406 THOC2Q8NI27 1593 aaKnown RBP14.98□□□□□ -0.01
CLK3-226ENST00000569406 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.98□□□□□ -0.01
CLK3-226ENST00000569406 PTPRKQ15262 1439 aa14.98□□□□□ -0.01
CLK3-226ENST00000569406 PAK3O75914 559 aaPredicted RBP14.96□□□□□ -0.01
CLK3-226ENST00000569406 AAMPQ13685 434 aa14.96□□□□□ -0.01
CLK3-226ENST00000569406 KLHL34Q8N239 644 aa14.95□□□□□ -0.02
CLK3-226ENST00000569406 SETD5Q9C0A6 1442 aa14.95□□□□□ -0.02
CLK3-226ENST00000569406 IQGAP2Q13576 1575 aa14.94□□□□□ -0.02
CLK3-226ENST00000569406 FGD6Q6ZV73 1430 aa14.94□□□□□ -0.02
CLK3-226ENST00000569406 RSPH6AQ9H0K4 717 aa14.94□□□□□ -0.02
CLK3-226ENST00000569406 BRPF3Q9ULD4 1205 aa14.93□□□□□ -0.02
CLK3-226ENST00000569406 UGGT2Q9NYU1 1516 aa14.91□□□□□ -0.02
CLK3-226ENST00000569406 NCOA2Q15596 1464 aa14.9□□□□□ -0.02
CLK3-226ENST00000569406 EIF4G3O43432 1585 aaKnown RBP14.9□□□□□ -0.02
CLK3-226ENST00000569406 IFT140Q96RY7 1462 aa14.89□□□□□ -0.03
CLK3-226ENST00000569406 SUPT6HQ7KZ85 1726 aaKnown RBP14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms