RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 SETD5Q9C0A6 1442 aa20.32■□□□□ 0.84
VPS35-210ENST00000568784 PRXQ9BXM0 1461 aa20.32■□□□□ 0.84
VPS35-210ENST00000568784 POLR3GLQ9BT43 218 aa20.3■□□□□ 0.84
VPS35-210ENST00000568784 RRBP1Q9P2E9 1410 aaKnown RBP20.29■□□□□ 0.84
VPS35-210ENST00000568784 CHIC2Q9UKJ5 165 aa20.29■□□□□ 0.84
VPS35-210ENST00000568784 ARHGAP35Q9NRY4 1499 aa20.27■□□□□ 0.84
VPS35-210ENST00000568784 CARMIL1Q5VZK9 1371 aa20.26■□□□□ 0.83
VPS35-210ENST00000568784 TOP2BQ02880 1626 aa20.26■□□□□ 0.83
VPS35-210ENST00000568784 RBM19Q9Y4C8 960 aaKnown RBP20.24■□□□□ 0.83
VPS35-210ENST00000568784 PHLDB1Q86UU1 1377 aa20.23■□□□□ 0.83
VPS35-210ENST00000568784 PPP1R15AO75807 674 aaPredicted RBP20.21■□□□□ 0.83
VPS35-210ENST00000568784 RRP7BPQ9NSQ0 103 aa20.19■□□□□ 0.82
VPS35-210ENST00000568784 CUX1P39880 1505 aa20.19■□□□□ 0.82
VPS35-210ENST00000568784 SENP3-EIF4A1A0A087X0R7 540 aa20.18■□□□□ 0.82
VPS35-210ENST00000568784 ERICH3Q5RHP9 1530 aa20.18■□□□□ 0.82
VPS35-210ENST00000568784 FAM9BQ8IZU0 186 aa20.18■□□□□ 0.82
VPS35-210ENST00000568784 CDK11AQ9UQ88 783 aaPredicted RBP20.17■□□□□ 0.82
VPS35-210ENST00000568784 IGF1RP08069 1367 aa20.16■□□□□ 0.82
VPS35-210ENST00000568784 PEG3Q9GZU2 1588 aa20.16■□□□□ 0.82
VPS35-210ENST00000568784 MTUS2Q5JR59 1369 aa20.15■□□□□ 0.82
VPS35-210ENST00000568784 WDR97A6NE52 1622 aa20.15■□□□□ 0.82
VPS35-210ENST00000568784 FHOD3Q2V2M9 1422 aa20.15■□□□□ 0.82
VPS35-210ENST00000568784 ZNF326Q5BKZ1 582 aaKnown RBP20.08■□□□□ 0.81
VPS35-210ENST00000568784 CCER2I3L3R5 266 aa20.08■□□□□ 0.8
VPS35-210ENST00000568784 LRRC9Q6ZRR7 1453 aa20.06■□□□□ 0.8
VPS35-210ENST00000568784 FHAD1B1AJZ9 1412 aa20.06■□□□□ 0.8
VPS35-210ENST00000568784 MAPKBP1O60336 1514 aa20.05■□□□□ 0.8
VPS35-210ENST00000568784 FOXD1Q16676 465 aa20.04■□□□□ 0.8
VPS35-210ENST00000568784 BCL11AQ9H165 835 aa20.04■□□□□ 0.8
VPS35-210ENST00000568784 MRS2Q9HD23 443 aa20.01■□□□□ 0.79
VPS35-210ENST00000568784 TIMELESSQ9UNS1 1208 aa20■□□□□ 0.79
VPS35-210ENST00000568784 HSPA5P11021 654 aaKnown RBP19.99■□□□□ 0.79
VPS35-210ENST00000568784 BIVM-ERCC5R4GMW8 1640 aa19.98■□□□□ 0.79
VPS35-210ENST00000568784 TIAM1Q13009 1591 aa19.98■□□□□ 0.79
VPS35-210ENST00000568784 B4GALNT3Q6L9W6 998 aa19.97■□□□□ 0.79
VPS35-210ENST00000568784 EIF4G2P78344 907 aaKnown RBP eCLIP19.97■□□□□ 0.79
VPS35-210ENST00000568784 FGD5Q6ZNL6 1462 aa19.96■□□□□ 0.79
VPS35-210ENST00000568784 CFTRP13569 1480 aa19.95■□□□□ 0.78
VPS35-210ENST00000568784 NCAPD3P42695 1498 aa19.94■□□□□ 0.78
VPS35-210ENST00000568784 CADPSQ9ULU8 1353 aa19.92■□□□□ 0.78
VPS35-210ENST00000568784 RAD54L2Q9Y4B4 1467 aa19.91■□□□□ 0.78
VPS35-210ENST00000568784 CCDC184Q52MB2 194 aa19.89■□□□□ 0.77
VPS35-210ENST00000568784 CCDC18Q5T9S5 1454 aa19.88■□□□□ 0.77
VPS35-210ENST00000568784 TDRD9Q8NDG6 1382 aaKnown RBP19.87■□□□□ 0.77
VPS35-210ENST00000568784 NBR1Q14596 966 aa19.87■□□□□ 0.77
VPS35-210ENST00000568784 MSH5O43196 834 aa19.84■□□□□ 0.77
VPS35-210ENST00000568784 L3MBTL2Q969R5 705 aa19.84■□□□□ 0.77
VPS35-210ENST00000568784 FGD6Q6ZV73 1430 aa19.83■□□□□ 0.77
VPS35-210ENST00000568784 SALL2Q9Y467 1007 aaPredicted RBP19.83■□□□□ 0.77
VPS35-210ENST00000568784 WASHC2AQ641Q2 1341 aa19.83■□□□□ 0.77
VPS35-210ENST00000568784 ZNF777Q9ULD5 760 aaPredicted RBP19.83■□□□□ 0.76
VPS35-210ENST00000568784 PCF11O94913 1555 aaKnown RBP19.82■□□□□ 0.76
VPS35-210ENST00000568784 PPP4R2Q9NY27 417 aa19.81■□□□□ 0.76
VPS35-210ENST00000568784 SLC4A1APQ9BWU0 796 aaKnown RBP19.8■□□□□ 0.76
VPS35-210ENST00000568784 MPHOSPH9Q99550 1183 aa19.77■□□□□ 0.76
VPS35-210ENST00000568784 HMGXB3Q12766 1538 aa19.76■□□□□ 0.75
VPS35-210ENST00000568784 FMN1Q68DA7 1419 aa19.76■□□□□ 0.75
VPS35-210ENST00000568784 UACAQ9BZF9 1416 aa19.75■□□□□ 0.75
VPS35-210ENST00000568784 FANCD2Q9BXW9 1451 aa19.75■□□□□ 0.75
VPS35-210ENST00000568784 CCDC136Q96JN2 1154 aa19.74■□□□□ 0.75
VPS35-210ENST00000568784 NPM2Q86SE8 214 aaKnown RBP19.74■□□□□ 0.75
VPS35-210ENST00000568784 PTPRKQ15262 1439 aa19.73■□□□□ 0.75
VPS35-210ENST00000568784 CASKIN1Q8WXD9 1431 aa19.72■□□□□ 0.75
VPS35-210ENST00000568784 PRKRIP1Q9H875 184 aaPredicted RBP19.72■□□□□ 0.75
VPS35-210ENST00000568784 C11orf95C9JLR9 678 aaPredicted RBP19.72■□□□□ 0.75
VPS35-210ENST00000568784 KDM2AQ9Y2K7 1162 aa19.69■□□□□ 0.74
VPS35-210ENST00000568784 MAP3K1Q13233 1512 aa19.68■□□□□ 0.74
VPS35-210ENST00000568784 AQRO60306 1485 aaKnown RBP eCLIP19.67■□□□□ 0.742e-7■■■■■ 29
VPS35-210ENST00000568784 FYCO1Q9BQS8 1478 aa19.67■□□□□ 0.74
VPS35-210ENST00000568784 NCOA2Q15596 1464 aa19.67■□□□□ 0.74
VPS35-210ENST00000568784 NAIPQ13075 1403 aa19.66■□□□□ 0.74
VPS35-210ENST00000568784 TMC1Q8TDI8 760 aa19.66■□□□□ 0.74
VPS35-210ENST00000568784 HFM1A2PYH4 1435 aa19.66■□□□□ 0.74
VPS35-210ENST00000568784 MYOM3Q5VTT5 1437 aa19.65■□□□□ 0.74
VPS35-210ENST00000568784 NESP48681 1621 aa19.64■□□□□ 0.74
VPS35-210ENST00000568784 FBLN2P98095 1184 aa19.64■□□□□ 0.73
VPS35-210ENST00000568784 RTL5Q5HYW3 569 aaPredicted RBP19.63■□□□□ 0.73
VPS35-210ENST00000568784 ANP32AP39687 249 aaKnown RBP19.63■□□□□ 0.73
VPS35-210ENST00000568784 NBPF8Q3BBV2 869 aa19.62■□□□□ 0.73
VPS35-210ENST00000568784 ZNF644Q9H582 1327 aaPredicted RBP19.61■□□□□ 0.73
VPS35-210ENST00000568784 FANCIQ9NVI1 1328 aa19.61■□□□□ 0.73
VPS35-210ENST00000568784 POLA1P09884 1462 aaPredicted RBP19.6■□□□□ 0.73
VPS35-210ENST00000568784 DEKP35659 375 aaKnown RBP19.58■□□□□ 0.73
VPS35-210ENST00000568784 CCDC7Q96M83 1385 aa19.58■□□□□ 0.73
VPS35-210ENST00000568784 NOP58Q9Y2X3 529 aaKnown RBP19.57■□□□□ 0.72
VPS35-210ENST00000568784 KIF7Q2M1P5 1343 aa19.57■□□□□ 0.72
VPS35-210ENST00000568784 CNTLNQ9NXG0 1405 aa19.56■□□□□ 0.72
VPS35-210ENST00000568784 ZBED9Q6R2W3 1325 aa19.54■□□□□ 0.72
VPS35-210ENST00000568784 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.54■□□□□ 0.72
VPS35-210ENST00000568784 ZBTB47Q9UFB7 747 aaPredicted RBP19.53■□□□□ 0.72
VPS35-210ENST00000568784 TOPBP1Q92547 1522 aa19.52■□□□□ 0.72
VPS35-210ENST00000568784 PTPN23Q9H3S7 1636 aa19.52■□□□□ 0.72
VPS35-210ENST00000568784 CFDP1Q9UEE9 299 aaPredicted RBP19.52■□□□□ 0.71
VPS35-210ENST00000568784 PAK3O75914 559 aaPredicted RBP19.5■□□□□ 0.71
VPS35-210ENST00000568784 AKNAQ7Z591 1439 aa19.5■□□□□ 0.71
VPS35-210ENST00000568784 CARD11Q9BXL7 1154 aa19.5■□□□□ 0.71
VPS35-210ENST00000568784 ERICH6BQ5W0A0 696 aa19.5■□□□□ 0.71
VPS35-210ENST00000568784 EFCAB5A4FU69 1503 aa19.49■□□□□ 0.71
VPS35-210ENST00000568784 PKD2Q13563 968 aa19.49■□□□□ 0.71
VPS35-210ENST00000568784 CFAP43Q8NDM7 1665 aa19.49■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 424.7 ms