RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 KIF27Q86VH2 1401 aa26.22■■□□□ 1.79
CLN3-236ENST00000568558 KIF13AQ9H1H9 1805 aa26.22■■□□□ 1.79
CLN3-236ENST00000568558 IGF1RP08069 1367 aa26.2■■□□□ 1.78
CLN3-236ENST00000568558 KIAA0586Q9BVV6 1533 aa26.15■■□□□ 1.78
CLN3-236ENST00000568558 ADCY10Q96PN6 1610 aa26.08■■□□□ 1.77
CLN3-236ENST00000568558 MAPKBP1O60336 1514 aa26.04■■□□□ 1.76
CLN3-236ENST00000568558 CARMIL1Q5VZK9 1371 aa26.02■■□□□ 1.76
CLN3-236ENST00000568558 DIP2BQ9P265 1576 aa25.99■■□□□ 1.75
CLN3-236ENST00000568558 ABCC10Q5T3U5 1492 aa25.98■■□□□ 1.75
CLN3-236ENST00000568558 NPM1P06748 294 aaKnown RBP eCLIP25.96■■□□□ 1.75
CLN3-236ENST00000568558 IQGAP2Q13576 1575 aa25.95■■□□□ 1.74
CLN3-236ENST00000568558 FAM69CQ0P6D2 419 aa25.89■■□□□ 1.74
CLN3-236ENST00000568558 AEBP2Q6ZN18 517 aaPredicted RBP25.88■■□□□ 1.73
CLN3-236ENST00000568558 PTPRGP23470 1445 aa25.88■■□□□ 1.73
CLN3-236ENST00000568558 CARMIL2Q6F5E8 1435 aa25.88■■□□□ 1.73
CLN3-236ENST00000568558 TNIKQ9UKE5 1360 aa25.84■■□□□ 1.73
CLN3-236ENST00000568558 TSPOAP1O95153 1857 aa25.83■■□□□ 1.73
CLN3-236ENST00000568558 RAPGEF2Q9Y4G8 1499 aa25.82■■□□□ 1.72
CLN3-236ENST00000568558 DISP1Q96F81 1524 aa25.79■■□□□ 1.72
CLN3-236ENST00000568558 ABCC2Q92887 1545 aa25.78■■□□□ 1.72
CLN3-236ENST00000568558 TTBK1Q5TCY1 1321 aaPredicted RBP25.77■■□□□ 1.72
CLN3-236ENST00000568558 UGGT2Q9NYU1 1516 aa25.77■■□□□ 1.72
CLN3-236ENST00000568558 KDM6BO15054 1643 aa25.75■■□□□ 1.71
CLN3-236ENST00000568558 CTTNBP2Q8WZ74 1663 aa25.74■■□□□ 1.71
CLN3-236ENST00000568558 UHRF1BP1LA0JNW5 1464 aa25.74■■□□□ 1.71
CLN3-236ENST00000568558 KIAA0556O60303 1618 aa25.73■■□□□ 1.71
CLN3-236ENST00000568558 UACAQ9BZF9 1416 aa25.71■■□□□ 1.71
CLN3-236ENST00000568558 ASXL2Q76L83 1435 aa25.68■■□□□ 1.7
CLN3-236ENST00000568558 PLB1Q6P1J6 1458 aa25.67■■□□□ 1.7
CLN3-236ENST00000568558 GLI2P10070 1586 aa25.67■■□□□ 1.7
CLN3-236ENST00000568558 PPRC1Q5VV67 1664 aaKnown RBP25.66■■□□□ 1.7
CLN3-236ENST00000568558 KDM5BQ9UGL1 1544 aa25.63■■□□□ 1.69
CLN3-236ENST00000568558 ZCCHC11Q5TAX3 1644 aaKnown RBP25.63■■□□□ 1.69
CLN3-236ENST00000568558 MAP3K4Q9Y6R4 1608 aa25.56■■□□□ 1.68
CLN3-236ENST00000568558 PRXQ9BXM0 1461 aa25.56■■□□□ 1.68
CLN3-236ENST00000568558 EPRSP07814 1512 aaKnown RBP25.55■■□□□ 1.68
CLN3-236ENST00000568558 GOLGA3Q08378 1498 aa25.53■■□□□ 1.68
CLN3-236ENST00000568558 ABCA8O94911 1581 aa25.48■■□□□ 1.67
CLN3-236ENST00000568558 WDR7Q9Y4E6 1490 aa25.45■■□□□ 1.66
CLN3-236ENST00000568558 TEX14Q8IWB6 1497 aa25.42■■□□□ 1.66
CLN3-236ENST00000568558 KDM4FA0A1W2PPD8 638 aa25.4■■□□□ 1.66
CLN3-236ENST00000568558 COL17A1Q9UMD9 1497 aaPredicted RBP25.39■■□□□ 1.65
CLN3-236ENST00000568558 CFAP43Q8NDM7 1665 aa25.39■■□□□ 1.65
CLN3-236ENST00000568558 SAMD9Q5K651 1589 aa25.32■■□□□ 1.64
CLN3-236ENST00000568558 CSRNP3Q8WYN3 585 aa25.29■■□□□ 1.64
CLN3-236ENST00000568558 MAGI3Q5TCQ9 1506 aa25.28■■□□□ 1.64
CLN3-236ENST00000568558 CD109Q6YHK3 1445 aa25.26■■□□□ 1.63
CLN3-236ENST00000568558 ADGRL1O94910 1474 aa25.25■■□□□ 1.63
CLN3-236ENST00000568558 EEA1Q15075 1411 aa25.23■■□□□ 1.63
CLN3-236ENST00000568558 P3H3Q8IVL6 736 aa25.23■■□□□ 1.63
CLN3-236ENST00000568558 KCNH8Q96L42 1107 aa25.23■■□□□ 1.63
CLN3-236ENST00000568558 RAPGEF6Q8TEU7 1601 aa25.22■■□□□ 1.63
CLN3-236ENST00000568558 ATP10BO94823 1461 aa25.21■■□□□ 1.63
CLN3-236ENST00000568558 FAM9AQ8IZU1 332 aaPredicted RBP25.19■■□□□ 1.62
CLN3-236ENST00000568558 ABCA9Q8IUA7 1624 aa25.16■■□□□ 1.62
CLN3-236ENST00000568558 ARID3CA6NKF2 412 aa25.14■■□□□ 1.62
CLN3-236ENST00000568558 KIF21BO75037 1637 aa25.11■■□□□ 1.61
CLN3-236ENST00000568558 ARAP3Q8WWN8 1544 aa25.09■■□□□ 1.61
CLN3-236ENST00000568558 NUP153P49790 1475 aaKnown RBP25.08■■□□□ 1.6
CLN3-236ENST00000568558 FHOD3Q2V2M9 1422 aa25.06■■□□□ 1.6
CLN3-236ENST00000568558 EFCAB5A4FU69 1503 aa25.04■■□□□ 1.6
CLN3-236ENST00000568558 RANGAP1P46060 587 aaPredicted RBP25.02■■□□□ 1.6
CLN3-236ENST00000568558 PHLDB1Q86UU1 1377 aa25■■□□□ 1.59
CLN3-236ENST00000568558 NEO1Q92859 1461 aa24.98■■□□□ 1.59
CLN3-236ENST00000568558 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.98■■□□□ 1.59
CLN3-236ENST00000568558 HNRNPUL2Q1KMD3 747 aaKnown RBP24.98■■□□□ 1.59
CLN3-236ENST00000568558 HECW2Q9P2P5 1572 aa24.94■■□□□ 1.58
CLN3-236ENST00000568558 FRMPD1Q5SYB0 1578 aa24.93■■□□□ 1.58
CLN3-236ENST00000568558 CFAP74Q9C0B2 1584 aa24.88■■□□□ 1.57
CLN3-236ENST00000568558 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.87■■□□□ 1.57
CLN3-236ENST00000568558 PLEKHD1A6NEE1 506 aa24.87■■□□□ 1.57
CLN3-236ENST00000568558 RICTORQ6R327 1708 aa24.86■■□□□ 1.57
CLN3-236ENST00000568558 TTC37Q6PGP7 1564 aa24.86■■□□□ 1.57
CLN3-236ENST00000568558 RAPGEF3O95398 923 aa24.86■■□□□ 1.57
CLN3-236ENST00000568558 ADAMTSL3P82987 1691 aa24.85■■□□□ 1.57
CLN3-236ENST00000568558 CDK13Q14004 1512 aaKnown RBP24.84■■□□□ 1.57
CLN3-236ENST00000568558 BCORL1Q5H9F3 1711 aa24.81■■□□□ 1.56
CLN3-236ENST00000568558 FANCAO15360 1455 aa24.8■■□□□ 1.56
CLN3-236ENST00000568558 ARHGEF40Q8TER5 1519 aa24.8■■□□□ 1.56
CLN3-236ENST00000568558 HECW1Q76N89 1606 aa24.79■■□□□ 1.56
CLN3-236ENST00000568558 CHIC1Q5VXU3 224 aa24.79■■□□□ 1.56
CLN3-236ENST00000568558 AKNAQ7Z591 1439 aa24.78■■□□□ 1.56
CLN3-236ENST00000568558 ARHGAP35Q9NRY4 1499 aa24.78■■□□□ 1.56
CLN3-236ENST00000568558 UBTFP17480 764 aaKnown RBP24.78■■□□□ 1.56
CLN3-236ENST00000568558 DENND4BO75064 1496 aaPredicted RBP24.77■■□□□ 1.56
CLN3-236ENST00000568558 EHMT2Q96KQ7 1210 aa24.76■■□□□ 1.55
CLN3-236ENST00000568558 FMN1Q68DA7 1419 aa24.76■■□□□ 1.55
CLN3-236ENST00000568558 PTPRMP28827 1452 aa24.74■■□□□ 1.55
CLN3-236ENST00000568558 ZMYM4Q5VZL5 1548 aa24.74■■□□□ 1.55
CLN3-236ENST00000568558 MADDQ8WXG6 1647 aa24.74■■□□□ 1.55
CLN3-236ENST00000568558 MYO5CQ9NQX4 1742 aa24.72■■□□□ 1.55
CLN3-236ENST00000568558 LRRIQ1Q96JM4 1722 aa24.72■■□□□ 1.55
CLN3-236ENST00000568558 KIF14Q15058 1648 aa24.67■■□□□ 1.54
CLN3-236ENST00000568558 PLCH2O75038 1416 aa24.67■■□□□ 1.54
CLN3-236ENST00000568558 SIGLEC1Q9BZZ2 1709 aa24.66■■□□□ 1.54
CLN3-236ENST00000568558 ZFYVE16Q7Z3T8 1539 aa24.66■■□□□ 1.54
CLN3-236ENST00000568558 ARID4BQ4LE39 1312 aaPredicted RBP24.66■■□□□ 1.54
CLN3-236ENST00000568558 RIMS1Q86UR5 1692 aaKnown RBP24.66■■□□□ 1.54
CLN3-236ENST00000568558 ILDR1Q86SU0 546 aaPredicted RBP24.64■■□□□ 1.54
CLN3-236ENST00000568558 ATP1B4Q9UN42 357 aaPredicted RBP24.64■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms