RNA–Protein interactions for RNA: ENST00000568292.1

CDH3-207, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-207ENST00000568292 TRHP20396 242 aaPredicted RBP17.41■□□□□ 0.38
CDH3-207ENST00000568292 KIAA0586Q9BVV6 1533 aa17.4■□□□□ 0.38
CDH3-207ENST00000568292 SHROOM2Q13796 1616 aa17.39■□□□□ 0.37
CDH3-207ENST00000568292 ERCC6L2Q5T890 1561 aa17.38■□□□□ 0.37
CDH3-207ENST00000568292 RUSC2Q8N2Y8 1516 aa17.37■□□□□ 0.37
CDH3-207ENST00000568292 RAPGEF2Q9Y4G8 1499 aa17.32■□□□□ 0.36
CDH3-207ENST00000568292 NPM1P06748 294 aaKnown RBP eCLIP17.27■□□□□ 0.36
CDH3-207ENST00000568292 CARMIL2Q6F5E8 1435 aa17.25■□□□□ 0.35
CDH3-207ENST00000568292 CSRNP3Q8WYN3 585 aa17.25■□□□□ 0.35
CDH3-207ENST00000568292 TTBK1Q5TCY1 1321 aaPredicted RBP17.21■□□□□ 0.35
CDH3-207ENST00000568292 PTPRGP23470 1445 aa17.21■□□□□ 0.35
CDH3-207ENST00000568292 IQGAP2Q13576 1575 aa17.2■□□□□ 0.34
CDH3-207ENST00000568292 TNIKQ9UKE5 1360 aa17.2■□□□□ 0.34
CDH3-207ENST00000568292 PRXQ9BXM0 1461 aa17.19■□□□□ 0.34
CDH3-207ENST00000568292 CHIC1Q5VXU3 224 aa17.18■□□□□ 0.34
CDH3-207ENST00000568292 EEA1Q15075 1411 aa17.16■□□□□ 0.34
CDH3-207ENST00000568292 FAM9AQ8IZU1 332 aaPredicted RBP17.15■□□□□ 0.34
CDH3-207ENST00000568292 UGGT2Q9NYU1 1516 aa17.13■□□□□ 0.33
CDH3-207ENST00000568292 DISP1Q96F81 1524 aa17.11■□□□□ 0.33
CDH3-207ENST00000568292 FAM69CQ0P6D2 419 aa17.08■□□□□ 0.32
CDH3-207ENST00000568292 ADCY10Q96PN6 1610 aa17.07■□□□□ 0.32
CDH3-207ENST00000568292 GOLGA3Q08378 1498 aa17.07■□□□□ 0.32
CDH3-207ENST00000568292 UACAQ9BZF9 1416 aa17.07■□□□□ 0.32
CDH3-207ENST00000568292 CTTNBP2Q8WZ74 1663 aa17.04■□□□□ 0.32
CDH3-207ENST00000568292 UHRF1BP1LA0JNW5 1464 aa17.04■□□□□ 0.32
CDH3-207ENST00000568292 MAPKBP1O60336 1514 aa17.03■□□□□ 0.32
CDH3-207ENST00000568292 KIAA0556O60303 1618 aa17.03■□□□□ 0.32
CDH3-207ENST00000568292 P3H3Q8IVL6 736 aa17.02■□□□□ 0.32
CDH3-207ENST00000568292 ABCC2Q92887 1545 aa17.01■□□□□ 0.31
CDH3-207ENST00000568292 ABCC10Q5T3U5 1492 aa17.01■□□□□ 0.31
CDH3-207ENST00000568292 RANGAP1P46060 587 aaPredicted RBP16.97■□□□□ 0.31
CDH3-207ENST00000568292 PLB1Q6P1J6 1458 aa16.95■□□□□ 0.3
CDH3-207ENST00000568292 UBTFP17480 764 aaKnown RBP16.95■□□□□ 0.3
CDH3-207ENST00000568292 ASXL2Q76L83 1435 aa16.95■□□□□ 0.3
CDH3-207ENST00000568292 EHMT2Q96KQ7 1210 aa16.94■□□□□ 0.3
CDH3-207ENST00000568292 KDM5BQ9UGL1 1544 aa16.94■□□□□ 0.3
CDH3-207ENST00000568292 KIF13AQ9H1H9 1805 aa16.93■□□□□ 0.3
CDH3-207ENST00000568292 KIF21BO75037 1637 aa16.91■□□□□ 0.3
CDH3-207ENST00000568292 DIP2BQ9P265 1576 aa16.9■□□□□ 0.3
CDH3-207ENST00000568292 ABCA8O94911 1581 aa16.88■□□□□ 0.29
CDH3-207ENST00000568292 ZCCHC11Q5TAX3 1644 aaKnown RBP16.85■□□□□ 0.29
CDH3-207ENST00000568292 KCNH8Q96L42 1107 aa16.85■□□□□ 0.29
CDH3-207ENST00000568292 SAMD9Q5K651 1589 aa16.85■□□□□ 0.29
CDH3-207ENST00000568292 GLI2P10070 1586 aa16.84■□□□□ 0.29
CDH3-207ENST00000568292 ARID3CA6NKF2 412 aa16.83■□□□□ 0.28
CDH3-207ENST00000568292 EPRSP07814 1512 aaKnown RBP16.82■□□□□ 0.28
CDH3-207ENST00000568292 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.82■□□□□ 0.28
CDH3-207ENST00000568292 HNRNPUL2Q1KMD3 747 aaKnown RBP16.82■□□□□ 0.28
CDH3-207ENST00000568292 ATP10BO94823 1461 aa16.8■□□□□ 0.28
CDH3-207ENST00000568292 WDR7Q9Y4E6 1490 aa16.8■□□□□ 0.28
CDH3-207ENST00000568292 FHOD3Q2V2M9 1422 aa16.8■□□□□ 0.28
CDH3-207ENST00000568292 EFCAB5A4FU69 1503 aa16.77■□□□□ 0.28
CDH3-207ENST00000568292 TSPOAP1O95153 1857 aa16.77■□□□□ 0.27
CDH3-207ENST00000568292 RAPGEF6Q8TEU7 1601 aa16.75■□□□□ 0.27
CDH3-207ENST00000568292 PLEKHD1A6NEE1 506 aa16.75■□□□□ 0.27
CDH3-207ENST00000568292 CD109Q6YHK3 1445 aa16.73■□□□□ 0.27
CDH3-207ENST00000568292 ATP1B4Q9UN42 357 aaPredicted RBP16.72■□□□□ 0.27
CDH3-207ENST00000568292 TEX14Q8IWB6 1497 aa16.72■□□□□ 0.27
CDH3-207ENST00000568292 KDM6BO15054 1643 aa16.71■□□□□ 0.27
CDH3-207ENST00000568292 MAP3K4Q9Y6R4 1608 aa16.7■□□□□ 0.26
CDH3-207ENST00000568292 NUP153P49790 1475 aaKnown RBP16.7■□□□□ 0.26
CDH3-207ENST00000568292 ARHGAP35Q9NRY4 1499 aa16.69■□□□□ 0.26
CDH3-207ENST00000568292 FMN1Q68DA7 1419 aa16.69■□□□□ 0.26
CDH3-207ENST00000568292 PPRC1Q5VV67 1664 aaKnown RBP16.67■□□□□ 0.26
CDH3-207ENST00000568292 MAGI3Q5TCQ9 1506 aa16.66■□□□□ 0.26
CDH3-207ENST00000568292 CDK11AQ9UQ88 783 aaPredicted RBP16.64■□□□□ 0.25
CDH3-207ENST00000568292 CFAP43Q8NDM7 1665 aa16.64■□□□□ 0.25
CDH3-207ENST00000568292 COL17A1Q9UMD9 1497 aaPredicted RBP16.62■□□□□ 0.25
CDH3-207ENST00000568292 PHLDB1Q86UU1 1377 aa16.61■□□□□ 0.25
CDH3-207ENST00000568292 ABCA9Q8IUA7 1624 aa16.57■□□□□ 0.24
CDH3-207ENST00000568292 CLIP1P30622 1438 aa16.57■□□□□ 0.24
CDH3-207ENST00000568292 CDK13Q14004 1512 aaKnown RBP16.55■□□□□ 0.24
CDH3-207ENST00000568292 HECW1Q76N89 1606 aa16.55■□□□□ 0.24
CDH3-207ENST00000568292 ARAP3Q8WWN8 1544 aa16.53■□□□□ 0.24
CDH3-207ENST00000568292 CASKIN1Q8WXD9 1431 aa16.53■□□□□ 0.24
CDH3-207ENST00000568292 NEO1Q92859 1461 aa16.52■□□□□ 0.23
CDH3-207ENST00000568292 KDM4FA0A1W2PPD8 638 aa16.51■□□□□ 0.23
CDH3-207ENST00000568292 LOC105371045A0A1W2PR82 267 aa16.51■□□□□ 0.23
CDH3-207ENST00000568292 RAPGEF3O95398 923 aa16.5■□□□□ 0.23
CDH3-207ENST00000568292 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.5■□□□□ 0.23
CDH3-207ENST00000568292 TROQ12816 1431 aaPredicted RBP16.47■□□□□ 0.23
CDH3-207ENST00000568292 AKNAQ7Z591 1439 aa16.47■□□□□ 0.23
CDH3-207ENST00000568292 EFCAB2Q5VUJ9 269 aa16.47■□□□□ 0.23
CDH3-207ENST00000568292 PLCH2O75038 1416 aa16.46■□□□□ 0.23
CDH3-207ENST00000568292 CCDC18Q5T9S5 1454 aa16.46■□□□□ 0.23
CDH3-207ENST00000568292 FANCAO15360 1455 aa16.45■□□□□ 0.22
CDH3-207ENST00000568292 FYCO1Q9BQS8 1478 aa16.43■□□□□ 0.22
CDH3-207ENST00000568292 CEP162Q5TB80 1403 aa16.43■□□□□ 0.22
CDH3-207ENST00000568292 DENND4BO75064 1496 aaPredicted RBP16.42■□□□□ 0.22
CDH3-207ENST00000568292 PCF11O94913 1555 aaKnown RBP16.42■□□□□ 0.22
CDH3-207ENST00000568292 TTC37Q6PGP7 1564 aa16.42■□□□□ 0.22
CDH3-207ENST00000568292 CFAP74Q9C0B2 1584 aa16.39■□□□□ 0.21
CDH3-207ENST00000568292 KIF14Q15058 1648 aa16.38■□□□□ 0.21
CDH3-207ENST00000568292 SCAPERQ9BY12 1400 aa16.38■□□□□ 0.21
CDH3-207ENST00000568292 LRRIQ1Q96JM4 1722 aa16.38■□□□□ 0.21
CDH3-207ENST00000568292 ADGRL1O94910 1474 aa16.37■□□□□ 0.21
CDH3-207ENST00000568292 ARID4BQ4LE39 1312 aaPredicted RBP16.35■□□□□ 0.21
CDH3-207ENST00000568292 MTUS2Q5JR59 1369 aa16.34■□□□□ 0.21
CDH3-207ENST00000568292 ARHGAP5Q13017 1502 aa16.33■□□□□ 0.2
CDH3-207ENST00000568292 MYO5CQ9NQX4 1742 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms