RNA–Protein interactions for RNA: ENST00000567223.6

SMPD3-209, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 2

Gene SMPD3, Length 530 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-209ENST00000567223 KIAA0586Q9BVV6 1533 aa32.2■■■□□ 2.74
SMPD3-209ENST00000567223 PRG4Q92954 1404 aaPredicted RBP32.18■■■□□ 2.74
SMPD3-209ENST00000567223 CARMIL1Q5VZK9 1371 aa32.14■■■□□ 2.74
SMPD3-209ENST00000567223 TRHP20396 242 aaPredicted RBP32.1■■■□□ 2.73
SMPD3-209ENST00000567223 RAPGEF2Q9Y4G8 1499 aa31.94■■■□□ 2.7
SMPD3-209ENST00000567223 IQGAP2Q13576 1575 aa31.9■■■□□ 2.7
SMPD3-209ENST00000567223 CARMIL2Q6F5E8 1435 aa31.83■■■□□ 2.69
SMPD3-209ENST00000567223 ADCY10Q96PN6 1610 aa31.81■■■□□ 2.68
SMPD3-209ENST00000567223 MAPKBP1O60336 1514 aa31.8■■■□□ 2.68
SMPD3-209ENST00000567223 UGGT2Q9NYU1 1516 aa31.77■■■□□ 2.68
SMPD3-209ENST00000567223 TNIKQ9UKE5 1360 aa31.77■■■□□ 2.68
SMPD3-209ENST00000567223 PRXQ9BXM0 1461 aa31.75■■■□□ 2.67
SMPD3-209ENST00000567223 PTPRGP23470 1445 aa31.75■■■□□ 2.67
SMPD3-209ENST00000567223 DISP1Q96F81 1524 aa31.73■■■□□ 2.67
SMPD3-209ENST00000567223 NPM1P06748 294 aaKnown RBP eCLIP31.7■■■□□ 2.67
SMPD3-209ENST00000567223 KIF13AQ9H1H9 1805 aa31.69■■■□□ 2.66
SMPD3-209ENST00000567223 ABCC10Q5T3U5 1492 aa31.67■■■□□ 2.66
SMPD3-209ENST00000567223 CTTNBP2Q8WZ74 1663 aa31.65■■■□□ 2.66
SMPD3-209ENST00000567223 UHRF1BP1LA0JNW5 1464 aa31.65■■■□□ 2.66
SMPD3-209ENST00000567223 KIAA0556O60303 1618 aa31.61■■■□□ 2.65
SMPD3-209ENST00000567223 ABCC2Q92887 1545 aa31.6■■■□□ 2.65
SMPD3-209ENST00000567223 DIP2BQ9P265 1576 aa31.59■■■□□ 2.65
SMPD3-209ENST00000567223 EEA1Q15075 1411 aa31.57■■■□□ 2.64
SMPD3-209ENST00000567223 UACAQ9BZF9 1416 aa31.56■■■□□ 2.64
SMPD3-209ENST00000567223 GOLGA3Q08378 1498 aa31.52■■■□□ 2.64
SMPD3-209ENST00000567223 FAM69CQ0P6D2 419 aa31.48■■■□□ 2.63
SMPD3-209ENST00000567223 CSRNP3Q8WYN3 585 aa31.48■■■□□ 2.63
SMPD3-209ENST00000567223 KDM5BQ9UGL1 1544 aa31.47■■■□□ 2.63
SMPD3-209ENST00000567223 PLB1Q6P1J6 1458 aa31.44■■■□□ 2.62
SMPD3-209ENST00000567223 ASXL2Q76L83 1435 aa31.39■■■□□ 2.62
SMPD3-209ENST00000567223 TTBK1Q5TCY1 1321 aaPredicted RBP31.38■■■□□ 2.61
SMPD3-209ENST00000567223 GLI2P10070 1586 aa31.38■■■□□ 2.61
SMPD3-209ENST00000567223 ZCCHC11Q5TAX3 1644 aaKnown RBP31.32■■■□□ 2.6
SMPD3-209ENST00000567223 ABCA8O94911 1581 aa31.32■■■□□ 2.6
SMPD3-209ENST00000567223 SAMD9Q5K651 1589 aa31.27■■■□□ 2.6
SMPD3-209ENST00000567223 EPRSP07814 1512 aaKnown RBP31.24■■■□□ 2.59
SMPD3-209ENST00000567223 KIF21BO75037 1637 aa31.24■■■□□ 2.59
SMPD3-209ENST00000567223 WDR7Q9Y4E6 1490 aa31.19■■■□□ 2.58
SMPD3-209ENST00000567223 MAP3K4Q9Y6R4 1608 aa31.18■■■□□ 2.58
SMPD3-209ENST00000567223 KDM6BO15054 1643 aa31.17■■■□□ 2.58
SMPD3-209ENST00000567223 PPRC1Q5VV67 1664 aaKnown RBP31.17■■■□□ 2.58
SMPD3-209ENST00000567223 CHIC1Q5VXU3 224 aa31.16■■■□□ 2.58
SMPD3-209ENST00000567223 TSPOAP1O95153 1857 aa31.16■■■□□ 2.58
SMPD3-209ENST00000567223 FAM9AQ8IZU1 332 aaPredicted RBP31.14■■■□□ 2.58
SMPD3-209ENST00000567223 TEX14Q8IWB6 1497 aa31.08■■■□□ 2.57
SMPD3-209ENST00000567223 EFCAB5A4FU69 1503 aa31.06■■■□□ 2.56
SMPD3-209ENST00000567223 RAPGEF6Q8TEU7 1601 aa31.02■■■□□ 2.56
SMPD3-209ENST00000567223 ATP10BO94823 1461 aa31.01■■■□□ 2.56
SMPD3-209ENST00000567223 CFAP43Q8NDM7 1665 aa31■■■□□ 2.55
SMPD3-209ENST00000567223 P3H3Q8IVL6 736 aa31■■■□□ 2.55
SMPD3-209ENST00000567223 MAGI3Q5TCQ9 1506 aa30.98■■■□□ 2.55
SMPD3-209ENST00000567223 FHOD3Q2V2M9 1422 aa30.93■■■□□ 2.54
SMPD3-209ENST00000567223 NUP153P49790 1475 aaKnown RBP30.92■■■□□ 2.54
SMPD3-209ENST00000567223 CD109Q6YHK3 1445 aa30.91■■■□□ 2.54
SMPD3-209ENST00000567223 COL17A1Q9UMD9 1497 aaPredicted RBP30.89■■■□□ 2.53
SMPD3-209ENST00000567223 AEBP2Q6ZN18 517 aaPredicted RBP30.88■■■□□ 2.53
SMPD3-209ENST00000567223 ABCA9Q8IUA7 1624 aa30.85■■■□□ 2.53
SMPD3-209ENST00000567223 KCNH8Q96L42 1107 aa30.83■■■□□ 2.53
SMPD3-209ENST00000567223 UBTFP17480 764 aaKnown RBP30.78■■■□□ 2.52
SMPD3-209ENST00000567223 RANGAP1P46060 587 aaPredicted RBP30.76■■■□□ 2.51
SMPD3-209ENST00000567223 PHLDB1Q86UU1 1377 aa30.75■■■□□ 2.51
SMPD3-209ENST00000567223 FMN1Q68DA7 1419 aa30.74■■■□□ 2.51
SMPD3-209ENST00000567223 ARID3CA6NKF2 412 aa30.74■■■□□ 2.51
SMPD3-209ENST00000567223 ARHGAP35Q9NRY4 1499 aa30.74■■■□□ 2.51
SMPD3-209ENST00000567223 ARAP3Q8WWN8 1544 aa30.73■■■□□ 2.51
SMPD3-209ENST00000567223 NEO1Q92859 1461 aa30.66■■■□□ 2.5
SMPD3-209ENST00000567223 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.66■■■□□ 2.5
SMPD3-209ENST00000567223 HNRNPUL2Q1KMD3 747 aaKnown RBP30.66■■■□□ 2.5
SMPD3-209ENST00000567223 KDM4FA0A1W2PPD8 638 aa30.65■■■□□ 2.5
SMPD3-209ENST00000567223 PLEKHD1A6NEE1 506 aa30.65■■■□□ 2.5
SMPD3-209ENST00000567223 HECW1Q76N89 1606 aa30.63■■■□□ 2.49
SMPD3-209ENST00000567223 CDK13Q14004 1512 aaKnown RBP30.56■■■□□ 2.48
SMPD3-209ENST00000567223 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.56■■■□□ 2.48
SMPD3-209ENST00000567223 EHMT2Q96KQ7 1210 aa30.55■■■□□ 2.48
SMPD3-209ENST00000567223 ADGRL1O94910 1474 aa30.52■■■□□ 2.48
SMPD3-209ENST00000567223 CFAP74Q9C0B2 1584 aa30.51■■■□□ 2.47
SMPD3-209ENST00000567223 TTC37Q6PGP7 1564 aa30.49■■■□□ 2.47
SMPD3-209ENST00000567223 CDK11AQ9UQ88 783 aaPredicted RBP30.45■■■□□ 2.47
SMPD3-209ENST00000567223 FANCAO15360 1455 aa30.44■■■□□ 2.46
SMPD3-209ENST00000567223 FRMPD1Q5SYB0 1578 aa30.44■■■□□ 2.46
SMPD3-209ENST00000567223 CASKIN1Q8WXD9 1431 aa30.43■■■□□ 2.46
SMPD3-209ENST00000567223 AKNAQ7Z591 1439 aa30.41■■■□□ 2.46
SMPD3-209ENST00000567223 PLCH2O75038 1416 aa30.4■■■□□ 2.46
SMPD3-209ENST00000567223 TROQ12816 1431 aaPredicted RBP30.39■■■□□ 2.46
SMPD3-209ENST00000567223 LRRIQ1Q96JM4 1722 aa30.39■■■□□ 2.46
SMPD3-209ENST00000567223 CCDC18Q5T9S5 1454 aa30.39■■■□□ 2.46
SMPD3-209ENST00000567223 DENND4BO75064 1496 aaPredicted RBP30.38■■■□□ 2.45
SMPD3-209ENST00000567223 PCF11O94913 1555 aaKnown RBP30.37■■■□□ 2.45
SMPD3-209ENST00000567223 KIF14Q15058 1648 aa30.36■■■□□ 2.45
SMPD3-209ENST00000567223 RICTORQ6R327 1708 aa30.36■■■□□ 2.45
SMPD3-209ENST00000567223 RAPGEF3O95398 923 aa30.36■■■□□ 2.45
SMPD3-209ENST00000567223 CLIP1P30622 1438 aa30.35■■■□□ 2.45
SMPD3-209ENST00000567223 FYCO1Q9BQS8 1478 aa30.35■■■□□ 2.45
SMPD3-209ENST00000567223 ATP1B4Q9UN42 357 aaPredicted RBP30.33■■■□□ 2.45
SMPD3-209ENST00000567223 ZMYM4Q5VZL5 1548 aa30.32■■■□□ 2.44
SMPD3-209ENST00000567223 MYO5CQ9NQX4 1742 aa30.31■■■□□ 2.44
SMPD3-209ENST00000567223 ARHGEF40Q8TER5 1519 aa30.28■■■□□ 2.44
SMPD3-209ENST00000567223 MAGI2Q86UL8 1455 aa30.27■■■□□ 2.44
SMPD3-209ENST00000567223 POGZQ7Z3K3 1410 aa30.22■■■□□ 2.43
SMPD3-209ENST00000567223 EFCAB2Q5VUJ9 269 aa30.22■■■□□ 2.43
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms