RNA–Protein interactions for RNA: ENST00000566816.1

CLN3-224, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 570 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-224ENST00000566816 JPH4Q96JJ6 628 aa18.16■□□□□ 0.5
CLN3-224ENST00000566816 GOLGA3Q08378 1498 aa18.14■□□□□ 0.49
CLN3-224ENST00000566816 UBTFP17480 764 aaKnown RBP18.09■□□□□ 0.49
CLN3-224ENST00000566816 SHROOM2Q13796 1616 aa18.05■□□□□ 0.48
CLN3-224ENST00000566816 IQGAP2Q13576 1575 aa18.04■□□□□ 0.48
CLN3-224ENST00000566816 TNIKQ9UKE5 1360 aa18.04■□□□□ 0.48
CLN3-224ENST00000566816 UGGT2Q9NYU1 1516 aa18.03■□□□□ 0.48
CLN3-224ENST00000566816 PRG4Q92954 1404 aaPredicted RBP18.02■□□□□ 0.48
CLN3-224ENST00000566816 CARMIL2Q6F5E8 1435 aa18.01■□□□□ 0.47
CLN3-224ENST00000566816 ARHGEF11O15085 1522 aa17.98■□□□□ 0.47
CLN3-224ENST00000566816 CTTNBP2Q8WZ74 1663 aa17.97■□□□□ 0.47
CLN3-224ENST00000566816 LOC105371045A0A1W2PR82 267 aa17.96■□□□□ 0.47
CLN3-224ENST00000566816 DISP1Q96F81 1524 aa17.94■□□□□ 0.46
CLN3-224ENST00000566816 EHMT2Q96KQ7 1210 aa17.93■□□□□ 0.46
CLN3-224ENST00000566816 RIMBP3CA6NJZ7 1639 aa17.89■□□□□ 0.45
CLN3-224ENST00000566816 RIMBP3BA6NNM3 1639 aa17.89■□□□□ 0.45
CLN3-224ENST00000566816 RIMBP3Q9UFD9 1639 aa17.89■□□□□ 0.45
CLN3-224ENST00000566816 PTPRGP23470 1445 aa17.89■□□□□ 0.45
CLN3-224ENST00000566816 EFCAB5A4FU69 1503 aa17.88■□□□□ 0.45
CLN3-224ENST00000566816 ERCC6L2Q5T890 1561 aa17.87■□□□□ 0.45
CLN3-224ENST00000566816 SAMD9Q5K651 1589 aa17.86■□□□□ 0.45
CLN3-224ENST00000566816 KIAA0556O60303 1618 aa17.85■□□□□ 0.45
CLN3-224ENST00000566816 CYB5RLQ6IPT4 315 aa17.85■□□□□ 0.45
CLN3-224ENST00000566816 ARAP1Q96P48 1450 aa17.85■□□□□ 0.45
CLN3-224ENST00000566816 ARHGAP35Q9NRY4 1499 aa17.82■□□□□ 0.44
CLN3-224ENST00000566816 CLIP1P30622 1438 aa17.82■□□□□ 0.44
CLN3-224ENST00000566816 RANGAP1P46060 587 aaPredicted RBP17.8■□□□□ 0.44
CLN3-224ENST00000566816 P3H3Q8IVL6 736 aa17.8■□□□□ 0.44
CLN3-224ENST00000566816 CEP162Q5TB80 1403 aa17.79■□□□□ 0.44
CLN3-224ENST00000566816 UHRF1BP1LA0JNW5 1464 aa17.76■□□□□ 0.43
CLN3-224ENST00000566816 FMN1Q68DA7 1419 aa17.76■□□□□ 0.43
CLN3-224ENST00000566816 UACAQ9BZF9 1416 aa17.76■□□□□ 0.43
CLN3-224ENST00000566816 FHOD3Q2V2M9 1422 aa17.75■□□□□ 0.43
CLN3-224ENST00000566816 NPM1P06748 294 aaKnown RBP eCLIP17.7■□□□□ 0.42
CLN3-224ENST00000566816 TTBK1Q5TCY1 1321 aaPredicted RBP17.7■□□□□ 0.42
CLN3-224ENST00000566816 ABCA8O94911 1581 aa17.69■□□□□ 0.42
CLN3-224ENST00000566816 PLB1Q6P1J6 1458 aa17.68■□□□□ 0.42
CLN3-224ENST00000566816 ABCC2Q92887 1545 aa17.67■□□□□ 0.42
CLN3-224ENST00000566816 KDM5BQ9UGL1 1544 aa17.65■□□□□ 0.42
CLN3-224ENST00000566816 CASKIN1Q8WXD9 1431 aa17.64■□□□□ 0.42
CLN3-224ENST00000566816 ADCY10Q96PN6 1610 aa17.61■□□□□ 0.41
CLN3-224ENST00000566816 RAPGEF6Q8TEU7 1601 aa17.6■□□□□ 0.41
CLN3-224ENST00000566816 ATP10BO94823 1461 aa17.59■□□□□ 0.41
CLN3-224ENST00000566816 NUP153P49790 1475 aaKnown RBP17.59■□□□□ 0.41
CLN3-224ENST00000566816 VPS8Q8N3P4 1428 aa17.59■□□□□ 0.41
CLN3-224ENST00000566816 FYCO1Q9BQS8 1478 aa17.57■□□□□ 0.4
CLN3-224ENST00000566816 CDK11AQ9UQ88 783 aaPredicted RBP17.56■□□□□ 0.4
CLN3-224ENST00000566816 MAPKBP1O60336 1514 aa17.54■□□□□ 0.4
CLN3-224ENST00000566816 EPRSP07814 1512 aaKnown RBP17.53■□□□□ 0.4
CLN3-224ENST00000566816 PLEKHD1A6NEE1 506 aa17.53■□□□□ 0.4
CLN3-224ENST00000566816 ATP1B4Q9UN42 357 aaPredicted RBP17.53■□□□□ 0.4
CLN3-224ENST00000566816 HECW1Q76N89 1606 aa17.53■□□□□ 0.4
CLN3-224ENST00000566816 CCDC18Q5T9S5 1454 aa17.52■□□□□ 0.4
CLN3-224ENST00000566816 ASXL2Q76L83 1435 aa17.5■□□□□ 0.39
CLN3-224ENST00000566816 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.5■□□□□ 0.39
CLN3-224ENST00000566816 HNRNPUL2Q1KMD3 747 aaKnown RBP17.5■□□□□ 0.39
CLN3-224ENST00000566816 PCF11O94913 1555 aaKnown RBP17.48■□□□□ 0.39
CLN3-224ENST00000566816 MAP3K1Q13233 1512 aa17.47■□□□□ 0.39
CLN3-224ENST00000566816 ZCCHC11Q5TAX3 1644 aaKnown RBP17.47■□□□□ 0.39
CLN3-224ENST00000566816 WDR7Q9Y4E6 1490 aa17.46■□□□□ 0.39
CLN3-224ENST00000566816 ARID3CA6NKF2 412 aa17.45■□□□□ 0.38
CLN3-224ENST00000566816 ABCC10Q5T3U5 1492 aa17.44■□□□□ 0.38
CLN3-224ENST00000566816 APLP2Q06481 763 aa17.44■□□□□ 0.38
CLN3-224ENST00000566816 CDK13Q14004 1512 aaKnown RBP17.42■□□□□ 0.38
CLN3-224ENST00000566816 TROQ12816 1431 aaPredicted RBP17.41■□□□□ 0.38
CLN3-224ENST00000566816 FAM69CQ0P6D2 419 aa17.4■□□□□ 0.38
CLN3-224ENST00000566816 GLI2P10070 1586 aa17.39■□□□□ 0.37
CLN3-224ENST00000566816 KCNH8Q96L42 1107 aa17.38■□□□□ 0.37
CLN3-224ENST00000566816 TRHP20396 242 aaPredicted RBP17.36■□□□□ 0.37
CLN3-224ENST00000566816 MTUS2Q5JR59 1369 aa17.36■□□□□ 0.37
CLN3-224ENST00000566816 TIAM1Q13009 1591 aa17.35■□□□□ 0.37
CLN3-224ENST00000566816 LRRIQ1Q96JM4 1722 aa17.34■□□□□ 0.37
CLN3-224ENST00000566816 DIP2BQ9P265 1576 aa17.33■□□□□ 0.37
CLN3-224ENST00000566816 LRRC9Q6ZRR7 1453 aa17.33■□□□□ 0.37
CLN3-224ENST00000566816 KANK4Q5T7N3 995 aaPredicted RBP17.31■□□□□ 0.36
CLN3-224ENST00000566816 MAGI3Q5TCQ9 1506 aa17.31■□□□□ 0.36
CLN3-224ENST00000566816 CD109Q6YHK3 1445 aa17.3■□□□□ 0.36
CLN3-224ENST00000566816 EHBP1L1Q8N3D4 1523 aa17.29■□□□□ 0.36
CLN3-224ENST00000566816 CFAP43Q8NDM7 1665 aa17.29■□□□□ 0.36
CLN3-224ENST00000566816 ABCA9Q8IUA7 1624 aa17.28■□□□□ 0.36
CLN3-224ENST00000566816 PHLDB1Q86UU1 1377 aa17.27■□□□□ 0.35
CLN3-224ENST00000566816 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.26■□□□□ 0.35
CLN3-224ENST00000566816 PLCH2O75038 1416 aa17.26■□□□□ 0.35
CLN3-224ENST00000566816 KIF14Q15058 1648 aa17.25■□□□□ 0.35
CLN3-224ENST00000566816 ARAP3Q8WWN8 1544 aa17.23■□□□□ 0.35
CLN3-224ENST00000566816 MAP3K4Q9Y6R4 1608 aa17.23■□□□□ 0.35
CLN3-224ENST00000566816 EFCAB2Q5VUJ9 269 aa17.23■□□□□ 0.35
CLN3-224ENST00000566816 KIF13AQ9H1H9 1805 aa17.23■□□□□ 0.35
CLN3-224ENST00000566816 TEX14Q8IWB6 1497 aa17.22■□□□□ 0.35
CLN3-224ENST00000566816 NCOA2Q15596 1464 aa17.21■□□□□ 0.35
CLN3-224ENST00000566816 CCNB3Q8WWL7 1395 aa17.21■□□□□ 0.35
CLN3-224ENST00000566816 GPATCH8Q9UKJ3 1502 aaKnown RBP17.21■□□□□ 0.34
CLN3-224ENST00000566816 NEO1Q92859 1461 aa17.18■□□□□ 0.34
CLN3-224ENST00000566816 SUPT6HQ7KZ85 1726 aaKnown RBP17.18■□□□□ 0.34
CLN3-224ENST00000566816 TTC37Q6PGP7 1564 aa17.17■□□□□ 0.34
CLN3-224ENST00000566816 CFDP1Q9UEE9 299 aaPredicted RBP17.17■□□□□ 0.34
CLN3-224ENST00000566816 MIA2Q96PC5 1412 aa17.15■□□□□ 0.34
CLN3-224ENST00000566816 FANCAO15360 1455 aa17.14■□□□□ 0.33
CLN3-224ENST00000566816 MYOM3Q5VTT5 1437 aa17.13■□□□□ 0.33
CLN3-224ENST00000566816 AKNAQ7Z591 1439 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms