RNA–Protein interactions for RNA: ENST00000565810.1

CDH1-208, Transcript of cadherin 1, humanhuman

TSL 3

Gene CDH1, Length 282 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-208ENST00000565810 TNIKQ9UKE5 1360 aa12.54□□□□□ -0.4
CDH1-208ENST00000565810 JPH4Q96JJ6 628 aa12.52□□□□□ -0.41
CDH1-208ENST00000565810 KIAA0586Q9BVV6 1533 aa12.52□□□□□ -0.41
CDH1-208ENST00000565810 RANGAP1P46060 587 aaPredicted RBP12.51□□□□□ -0.41
CDH1-208ENST00000565810 CHD1O14646 1710 aa12.48□□□□□ -0.41
CDH1-208ENST00000565810 CEP170Q5SW79 1584 aa12.48□□□□□ -0.41
CDH1-208ENST00000565810 IQGAP2Q13576 1575 aa12.43□□□□□ -0.42
CDH1-208ENST00000565810 CARMIL2Q6F5E8 1435 aa12.43□□□□□ -0.42
CDH1-208ENST00000565810 CLASP1Q7Z460 1538 aa12.42□□□□□ -0.42
CDH1-208ENST00000565810 CLIP1P30622 1438 aa12.41□□□□□ -0.42
CDH1-208ENST00000565810 P3H3Q8IVL6 736 aa12.41□□□□□ -0.42
CDH1-208ENST00000565810 PRG4Q92954 1404 aaPredicted RBP12.41□□□□□ -0.42
CDH1-208ENST00000565810 CEP162Q5TB80 1403 aa12.4□□□□□ -0.42
CDH1-208ENST00000565810 UGGT2Q9NYU1 1516 aa12.4□□□□□ -0.42
CDH1-208ENST00000565810 CTTNBP2Q8WZ74 1663 aa12.38□□□□□ -0.43
CDH1-208ENST00000565810 TTBK1Q5TCY1 1321 aaPredicted RBP12.37□□□□□ -0.43
CDH1-208ENST00000565810 EFCAB5A4FU69 1503 aa12.35□□□□□ -0.43
CDH1-208ENST00000565810 ARHGAP35Q9NRY4 1499 aa12.34□□□□□ -0.43
CDH1-208ENST00000565810 DISP1Q96F81 1524 aa12.34□□□□□ -0.43
CDH1-208ENST00000565810 PTPRGP23470 1445 aa12.34□□□□□ -0.43
CDH1-208ENST00000565810 FHOD3Q2V2M9 1422 aa12.33□□□□□ -0.44
CDH1-208ENST00000565810 SHROOM2Q13796 1616 aa12.33□□□□□ -0.44
CDH1-208ENST00000565810 DNAJC5Q9H3Z4 198 aa12.32□□□□□ -0.44
CDH1-208ENST00000565810 KIAA0556O60303 1618 aa12.3□□□□□ -0.44
CDH1-208ENST00000565810 FMN1Q68DA7 1419 aa12.3□□□□□ -0.44
CDH1-208ENST00000565810 SAMD9Q5K651 1589 aa12.3□□□□□ -0.44
CDH1-208ENST00000565810 ARHGEF11O15085 1522 aa12.29□□□□□ -0.44
CDH1-208ENST00000565810 ATP1B4Q9UN42 357 aaPredicted RBP12.29□□□□□ -0.44
CDH1-208ENST00000565810 ARAP1Q96P48 1450 aa12.28□□□□□ -0.44
CDH1-208ENST00000565810 CYB5RLQ6IPT4 315 aa12.28□□□□□ -0.44
CDH1-208ENST00000565810 ERCC6L2Q5T890 1561 aa12.27□□□□□ -0.44
CDH1-208ENST00000565810 APLP2Q06481 763 aa12.24□□□□□ -0.45
CDH1-208ENST00000565810 VPS8Q8N3P4 1428 aa12.24□□□□□ -0.45
CDH1-208ENST00000565810 UACAQ9BZF9 1416 aa12.23□□□□□ -0.45
CDH1-208ENST00000565810 NPM1P06748 294 aaKnown RBP eCLIP12.23□□□□□ -0.45
CDH1-208ENST00000565810 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.22□□□□□ -0.45
CDH1-208ENST00000565810 HNRNPUL2Q1KMD3 747 aaKnown RBP12.22□□□□□ -0.45
CDH1-208ENST00000565810 RIMBP3CA6NJZ7 1639 aa12.21□□□□□ -0.46
CDH1-208ENST00000565810 RIMBP3BA6NNM3 1639 aa12.21□□□□□ -0.46
CDH1-208ENST00000565810 RIMBP3Q9UFD9 1639 aa12.21□□□□□ -0.46
CDH1-208ENST00000565810 PLB1Q6P1J6 1458 aa12.21□□□□□ -0.46
CDH1-208ENST00000565810 CASKIN1Q8WXD9 1431 aa12.2□□□□□ -0.46
CDH1-208ENST00000565810 ARID3CA6NKF2 412 aa12.19□□□□□ -0.46
CDH1-208ENST00000565810 CDK11AQ9UQ88 783 aaPredicted RBP12.18□□□□□ -0.46
CDH1-208ENST00000565810 UHRF1BP1LA0JNW5 1464 aa12.17□□□□□ -0.46
CDH1-208ENST00000565810 FYCO1Q9BQS8 1478 aa12.16□□□□□ -0.46
CDH1-208ENST00000565810 ABCA8O94911 1581 aa12.16□□□□□ -0.46
CDH1-208ENST00000565810 ABCC2Q92887 1545 aa12.16□□□□□ -0.46
CDH1-208ENST00000565810 PLEKHD1A6NEE1 506 aa12.14□□□□□ -0.47
CDH1-208ENST00000565810 RAPGEF6Q8TEU7 1601 aa12.14□□□□□ -0.47
CDH1-208ENST00000565810 NUP153P49790 1475 aaKnown RBP12.14□□□□□ -0.47
CDH1-208ENST00000565810 CCDC18Q5T9S5 1454 aa12.13□□□□□ -0.47
CDH1-208ENST00000565810 HECW1Q76N89 1606 aa12.12□□□□□ -0.47
CDH1-208ENST00000565810 ATP10BO94823 1461 aa12.12□□□□□ -0.47
CDH1-208ENST00000565810 PCF11O94913 1555 aaKnown RBP12.12□□□□□ -0.47
CDH1-208ENST00000565810 EPRSP07814 1512 aaKnown RBP12.11□□□□□ -0.47
CDH1-208ENST00000565810 KDM5BQ9UGL1 1544 aa12.1□□□□□ -0.47
CDH1-208ENST00000565810 MTUS2Q5JR59 1369 aa12.08□□□□□ -0.48
CDH1-208ENST00000565810 ADCY10Q96PN6 1610 aa12.08□□□□□ -0.48
CDH1-208ENST00000565810 MAP3K1Q13233 1512 aa12.06□□□□□ -0.48
CDH1-208ENST00000565810 CDK13Q14004 1512 aaKnown RBP12.06□□□□□ -0.48
CDH1-208ENST00000565810 KANK4Q5T7N3 995 aaPredicted RBP12.06□□□□□ -0.48
CDH1-208ENST00000565810 KCNH8Q96L42 1107 aa12.06□□□□□ -0.48
CDH1-208ENST00000565810 PPARGC1BQ86YN6 1023 aaKnown RBP12.04□□□□□ -0.48
CDH1-208ENST00000565810 TROQ12816 1431 aaPredicted RBP12.03□□□□□ -0.48
CDH1-208ENST00000565810 ASXL2Q76L83 1435 aa12.03□□□□□ -0.48
CDH1-208ENST00000565810 TIAM1Q13009 1591 aa12.03□□□□□ -0.48
CDH1-208ENST00000565810 LRRC9Q6ZRR7 1453 aa12.02□□□□□ -0.48
CDH1-208ENST00000565810 WDR7Q9Y4E6 1490 aa12.02□□□□□ -0.49
CDH1-208ENST00000565810 ZCCHC11Q5TAX3 1644 aaKnown RBP12.01□□□□□ -0.49
CDH1-208ENST00000565810 FAM69CQ0P6D2 419 aa11.99□□□□□ -0.49
CDH1-208ENST00000565810 MAPKBP1O60336 1514 aa11.99□□□□□ -0.49
CDH1-208ENST00000565810 EHBP1L1Q8N3D4 1523 aa11.98□□□□□ -0.49
CDH1-208ENST00000565810 TRHP20396 242 aaPredicted RBP11.96□□□□□ -0.49
CDH1-208ENST00000565810 CFAP43Q8NDM7 1665 aa11.96□□□□□ -0.5
CDH1-208ENST00000565810 MAGI3Q5TCQ9 1506 aa11.96□□□□□ -0.5
CDH1-208ENST00000565810 CCNB3Q8WWL7 1395 aa11.95□□□□□ -0.5
CDH1-208ENST00000565810 NCOA2Q15596 1464 aa11.94□□□□□ -0.5
CDH1-208ENST00000565810 ABCC10Q5T3U5 1492 aa11.94□□□□□ -0.5
CDH1-208ENST00000565810 LRRIQ1Q96JM4 1722 aa11.94□□□□□ -0.5
CDH1-208ENST00000565810 CFDP1Q9UEE9 299 aaPredicted RBP11.93□□□□□ -0.5
CDH1-208ENST00000565810 KIF14Q15058 1648 aa11.93□□□□□ -0.5
CDH1-208ENST00000565810 CD109Q6YHK3 1445 aa11.92□□□□□ -0.5
CDH1-208ENST00000565810 EFCAB2Q5VUJ9 269 aa11.91□□□□□ -0.5
CDH1-208ENST00000565810 SUPT6HQ7KZ85 1726 aaKnown RBP11.9□□□□□ -0.5
CDH1-208ENST00000565810 ZNF777Q9ULD5 760 aaPredicted RBP11.9□□□□□ -0.5
CDH1-208ENST00000565810 PHLDB1Q86UU1 1377 aa11.9□□□□□ -0.5
CDH1-208ENST00000565810 PLCH2O75038 1416 aa11.89□□□□□ -0.51
CDH1-208ENST00000565810 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.89□□□□□ -0.51
CDH1-208ENST00000565810 GPATCH8Q9UKJ3 1502 aaKnown RBP11.88□□□□□ -0.51
CDH1-208ENST00000565810 GLI2P10070 1586 aa11.88□□□□□ -0.51
CDH1-208ENST00000565810 MYOM3Q5VTT5 1437 aa11.87□□□□□ -0.51
CDH1-208ENST00000565810 FAM50AQ14320 339 aaKnown RBP11.87□□□□□ -0.51
CDH1-208ENST00000565810 MIA2Q96PC5 1412 aa11.86□□□□□ -0.51
CDH1-208ENST00000565810 DIP2BQ9P265 1576 aa11.86□□□□□ -0.51
CDH1-208ENST00000565810 ABCA9Q8IUA7 1624 aa11.85□□□□□ -0.51
CDH1-208ENST00000565810 ARHGAP5Q13017 1502 aa11.84□□□□□ -0.51
CDH1-208ENST00000565810 FGD6Q6ZV73 1430 aa11.84□□□□□ -0.51
CDH1-208ENST00000565810 TTC37Q6PGP7 1564 aa11.84□□□□□ -0.51
CDH1-208ENST00000565810 RSPH4AQ5TD94 716 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms