RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 PRG4Q92954 1404 aaPredicted RBP18.76■□□□□ 0.59
VPS39-208ENST00000564994 JPH4Q96JJ6 628 aa18.76■□□□□ 0.59
VPS39-208ENST00000564994 CARMIL1Q5VZK9 1371 aa18.7■□□□□ 0.58
VPS39-208ENST00000564994 KIAA0586Q9BVV6 1533 aa18.7■□□□□ 0.58
VPS39-208ENST00000564994 ADCY10Q96PN6 1610 aa18.57■□□□□ 0.56
VPS39-208ENST00000564994 IQGAP2Q13576 1575 aa18.57■□□□□ 0.56
VPS39-208ENST00000564994 KIF13AQ9H1H9 1805 aa18.56■□□□□ 0.56
VPS39-208ENST00000564994 RAPGEF2Q9Y4G8 1499 aa18.56■□□□□ 0.56
VPS39-208ENST00000564994 MAPKBP1O60336 1514 aa18.49■□□□□ 0.55
VPS39-208ENST00000564994 DISP1Q96F81 1524 aa18.49■□□□□ 0.55
VPS39-208ENST00000564994 PTPRGP23470 1445 aa18.49■□□□□ 0.55
VPS39-208ENST00000564994 CARMIL2Q6F5E8 1435 aa18.49■□□□□ 0.55
VPS39-208ENST00000564994 TNIKQ9UKE5 1360 aa18.47■□□□□ 0.55
VPS39-208ENST00000564994 UGGT2Q9NYU1 1516 aa18.46■□□□□ 0.55
VPS39-208ENST00000564994 NPM1P06748 294 aaKnown RBP eCLIP18.46■□□□□ 0.55
VPS39-208ENST00000564994 CTTNBP2Q8WZ74 1663 aa18.46■□□□□ 0.55
VPS39-208ENST00000564994 TTBK1Q5TCY1 1321 aaPredicted RBP18.46■□□□□ 0.55
VPS39-208ENST00000564994 ABCC10Q5T3U5 1492 aa18.44■□□□□ 0.54
VPS39-208ENST00000564994 PRXQ9BXM0 1461 aa18.44■□□□□ 0.54
VPS39-208ENST00000564994 DIP2BQ9P265 1576 aa18.43■□□□□ 0.54
VPS39-208ENST00000564994 KIAA0556O60303 1618 aa18.41■□□□□ 0.54
VPS39-208ENST00000564994 FAM69CQ0P6D2 419 aa18.4■□□□□ 0.54
VPS39-208ENST00000564994 ABCC2Q92887 1545 aa18.38■□□□□ 0.53
VPS39-208ENST00000564994 UHRF1BP1LA0JNW5 1464 aa18.37■□□□□ 0.53
VPS39-208ENST00000564994 UACAQ9BZF9 1416 aa18.36■□□□□ 0.53
VPS39-208ENST00000564994 TSPOAP1O95153 1857 aa18.33■□□□□ 0.52
VPS39-208ENST00000564994 CSRNP3Q8WYN3 585 aa18.31■□□□□ 0.52
VPS39-208ENST00000564994 ASXL2Q76L83 1435 aa18.3■□□□□ 0.52
VPS39-208ENST00000564994 KDM5BQ9UGL1 1544 aa18.29■□□□□ 0.52
VPS39-208ENST00000564994 ZCCHC11Q5TAX3 1644 aaKnown RBP18.29■□□□□ 0.52
VPS39-208ENST00000564994 GOLGA3Q08378 1498 aa18.28■□□□□ 0.52
VPS39-208ENST00000564994 PLB1Q6P1J6 1458 aa18.27■□□□□ 0.52
VPS39-208ENST00000564994 GLI2P10070 1586 aa18.25■□□□□ 0.51
VPS39-208ENST00000564994 EEA1Q15075 1411 aa18.24■□□□□ 0.51
VPS39-208ENST00000564994 ABCA8O94911 1581 aa18.24■□□□□ 0.51
VPS39-208ENST00000564994 PPRC1Q5VV67 1664 aaKnown RBP18.23■□□□□ 0.51
VPS39-208ENST00000564994 KDM6BO15054 1643 aa18.2■□□□□ 0.5
VPS39-208ENST00000564994 EPRSP07814 1512 aaKnown RBP18.2■□□□□ 0.5
VPS39-208ENST00000564994 SAMD9Q5K651 1589 aa18.19■□□□□ 0.5
VPS39-208ENST00000564994 FAM9AQ8IZU1 332 aaPredicted RBP18.19■□□□□ 0.5
VPS39-208ENST00000564994 MAP3K4Q9Y6R4 1608 aa18.17■□□□□ 0.5
VPS39-208ENST00000564994 P3H3Q8IVL6 736 aa18.17■□□□□ 0.5
VPS39-208ENST00000564994 CHIC1Q5VXU3 224 aa18.15■□□□□ 0.5
VPS39-208ENST00000564994 WDR7Q9Y4E6 1490 aa18.14■□□□□ 0.5
VPS39-208ENST00000564994 KIF21BO75037 1637 aa18.14■□□□□ 0.49
VPS39-208ENST00000564994 AEBP2Q6ZN18 517 aaPredicted RBP18.09■□□□□ 0.49
VPS39-208ENST00000564994 ATP10BO94823 1461 aa18.07■□□□□ 0.48
VPS39-208ENST00000564994 RANGAP1P46060 587 aaPredicted RBP18.07■□□□□ 0.48
VPS39-208ENST00000564994 RAPGEF6Q8TEU7 1601 aa18.07■□□□□ 0.48
VPS39-208ENST00000564994 COL17A1Q9UMD9 1497 aaPredicted RBP18.07■□□□□ 0.48
VPS39-208ENST00000564994 ARID3CA6NKF2 412 aa18.06■□□□□ 0.48
VPS39-208ENST00000564994 CFAP43Q8NDM7 1665 aa18.06■□□□□ 0.48
VPS39-208ENST00000564994 KCNH8Q96L42 1107 aa18.05■□□□□ 0.48
VPS39-208ENST00000564994 TEX14Q8IWB6 1497 aa18.05■□□□□ 0.48
VPS39-208ENST00000564994 FHOD3Q2V2M9 1422 aa18.05■□□□□ 0.48
VPS39-208ENST00000564994 CD109Q6YHK3 1445 aa18.01■□□□□ 0.47
VPS39-208ENST00000564994 EFCAB5A4FU69 1503 aa18.01■□□□□ 0.47
VPS39-208ENST00000564994 MAGI3Q5TCQ9 1506 aa18■□□□□ 0.47
VPS39-208ENST00000564994 EHMT2Q96KQ7 1210 aa18■□□□□ 0.47
VPS39-208ENST00000564994 NUP153P49790 1475 aaKnown RBP18■□□□□ 0.47
VPS39-208ENST00000564994 ABCA9Q8IUA7 1624 aa17.95■□□□□ 0.46
VPS39-208ENST00000564994 KDM4FA0A1W2PPD8 638 aa17.94■□□□□ 0.46
VPS39-208ENST00000564994 UBTFP17480 764 aaKnown RBP17.94■□□□□ 0.46
VPS39-208ENST00000564994 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.91■□□□□ 0.46
VPS39-208ENST00000564994 HNRNPUL2Q1KMD3 747 aaKnown RBP17.91■□□□□ 0.46
VPS39-208ENST00000564994 ARHGAP35Q9NRY4 1499 aa17.9■□□□□ 0.46
VPS39-208ENST00000564994 ARAP3Q8WWN8 1544 aa17.86■□□□□ 0.45
VPS39-208ENST00000564994 CDK13Q14004 1512 aaKnown RBP17.85■□□□□ 0.45
VPS39-208ENST00000564994 ADGRL1O94910 1474 aa17.84■□□□□ 0.45
VPS39-208ENST00000564994 PLEKHD1A6NEE1 506 aa17.83■□□□□ 0.44
VPS39-208ENST00000564994 FMN1Q68DA7 1419 aa17.81■□□□□ 0.44
VPS39-208ENST00000564994 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.81■□□□□ 0.44
VPS39-208ENST00000564994 NEO1Q92859 1461 aa17.81■□□□□ 0.44
VPS39-208ENST00000564994 HECW1Q76N89 1606 aa17.8■□□□□ 0.44
VPS39-208ENST00000564994 PHLDB1Q86UU1 1377 aa17.79■□□□□ 0.44
VPS39-208ENST00000564994 TTC37Q6PGP7 1564 aa17.79■□□□□ 0.44
VPS39-208ENST00000564994 LRRIQ1Q96JM4 1722 aa17.79■□□□□ 0.44
VPS39-208ENST00000564994 FRMPD1Q5SYB0 1578 aa17.77■□□□□ 0.44
VPS39-208ENST00000564994 ATP1B4Q9UN42 357 aaPredicted RBP17.76■□□□□ 0.43
VPS39-208ENST00000564994 RAPGEF3O95398 923 aa17.75■□□□□ 0.43
VPS39-208ENST00000564994 RICTORQ6R327 1708 aa17.72■□□□□ 0.43
VPS39-208ENST00000564994 CFAP74Q9C0B2 1584 aa17.72■□□□□ 0.43
VPS39-208ENST00000564994 FANCAO15360 1455 aa17.72■□□□□ 0.43
VPS39-208ENST00000564994 PCF11O94913 1555 aaKnown RBP17.71■□□□□ 0.43
VPS39-208ENST00000564994 AKNAQ7Z591 1439 aa17.71■□□□□ 0.43
VPS39-208ENST00000564994 KIF14Q15058 1648 aa17.7■□□□□ 0.42
VPS39-208ENST00000564994 MYO5CQ9NQX4 1742 aa17.68■□□□□ 0.42
VPS39-208ENST00000564994 DENND4BO75064 1496 aaPredicted RBP17.68■□□□□ 0.42
VPS39-208ENST00000564994 PLCH2O75038 1416 aa17.67■□□□□ 0.42
VPS39-208ENST00000564994 CASKIN1Q8WXD9 1431 aa17.67■□□□□ 0.42
VPS39-208ENST00000564994 TROQ12816 1431 aaPredicted RBP17.66■□□□□ 0.42
VPS39-208ENST00000564994 CDK11AQ9UQ88 783 aaPredicted RBP17.66■□□□□ 0.42
VPS39-208ENST00000564994 CLIP1P30622 1438 aa17.64■□□□□ 0.42
VPS39-208ENST00000564994 ARHGEF40Q8TER5 1519 aa17.63■□□□□ 0.41
VPS39-208ENST00000564994 CCDC18Q5T9S5 1454 aa17.62■□□□□ 0.41
VPS39-208ENST00000564994 ZMYM4Q5VZL5 1548 aa17.62■□□□□ 0.41
VPS39-208ENST00000564994 ADAMTSL3P82987 1691 aa17.61■□□□□ 0.41
VPS39-208ENST00000564994 FYCO1Q9BQS8 1478 aa17.61■□□□□ 0.41
VPS39-208ENST00000564994 SCAPERQ9BY12 1400 aa17.6■□□□□ 0.41
VPS39-208ENST00000564994 BCORL1Q5H9F3 1711 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms