RNA–Protein interactions for RNA: ENST00000564703.1

RAB40C-208, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 3

Gene RAB40C, Length 921 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-208ENST00000564703 RIMBP3CA6NJZ7 1639 aa26.38■■□□□ 1.81
RAB40C-208ENST00000564703 RIMBP3BA6NNM3 1639 aa26.38■■□□□ 1.81
RAB40C-208ENST00000564703 RIMBP3Q9UFD9 1639 aa26.38■■□□□ 1.81
RAB40C-208ENST00000564703 PRXQ9BXM0 1461 aa26.37■■□□□ 1.81
RAB40C-208ENST00000564703 CYB5RLQ6IPT4 315 aa26.34■■□□□ 1.81
RAB40C-208ENST00000564703 PRG4Q92954 1404 aaPredicted RBP26.29■■□□□ 1.8
RAB40C-208ENST00000564703 SHROOM2Q13796 1616 aa26.25■■□□□ 1.79
RAB40C-208ENST00000564703 IQGAP2Q13576 1575 aa26.22■■□□□ 1.79
RAB40C-208ENST00000564703 EHMT2Q96KQ7 1210 aa26.21■■□□□ 1.79
RAB40C-208ENST00000564703 ARAP1Q96P48 1450 aa26.19■■□□□ 1.78
RAB40C-208ENST00000564703 UBTFP17480 764 aaKnown RBP26.18■■□□□ 1.78
RAB40C-208ENST00000564703 CARMIL2Q6F5E8 1435 aa26.17■■□□□ 1.78
RAB40C-208ENST00000564703 ERCC6L2Q5T890 1561 aa26.16■■□□□ 1.78
RAB40C-208ENST00000564703 KIF21BO75037 1637 aa26.14■■□□□ 1.78
RAB40C-208ENST00000564703 CTTNBP2Q8WZ74 1663 aa26.14■■□□□ 1.78
RAB40C-208ENST00000564703 TTBK1Q5TCY1 1321 aaPredicted RBP26.09■■□□□ 1.77
RAB40C-208ENST00000564703 GOLGA3Q08378 1498 aa26.08■■□□□ 1.77
RAB40C-208ENST00000564703 UGGT2Q9NYU1 1516 aa26.06■■□□□ 1.76
RAB40C-208ENST00000564703 RANGAP1P46060 587 aaPredicted RBP26.06■■□□□ 1.76
RAB40C-208ENST00000564703 TNIKQ9UKE5 1360 aa26.04■■□□□ 1.76
RAB40C-208ENST00000564703 PTPRGP23470 1445 aa26.04■■□□□ 1.76
RAB40C-208ENST00000564703 DISP1Q96F81 1524 aa25.99■■□□□ 1.75
RAB40C-208ENST00000564703 P3H3Q8IVL6 736 aa25.97■■□□□ 1.75
RAB40C-208ENST00000564703 NPM1P06748 294 aaKnown RBP eCLIP25.96■■□□□ 1.75
RAB40C-208ENST00000564703 KIAA0556O60303 1618 aa25.92■■□□□ 1.74
RAB40C-208ENST00000564703 UACAQ9BZF9 1416 aa25.82■■□□□ 1.72
RAB40C-208ENST00000564703 TRHP20396 242 aaPredicted RBP25.81■■□□□ 1.72
RAB40C-208ENST00000564703 SAMD9Q5K651 1589 aa25.78■■□□□ 1.72
RAB40C-208ENST00000564703 LOC105371045A0A1W2PR82 267 aa25.78■■□□□ 1.72
RAB40C-208ENST00000564703 EFCAB5A4FU69 1503 aa25.77■■□□□ 1.72
RAB40C-208ENST00000564703 ADCY10Q96PN6 1610 aa25.74■■□□□ 1.71
RAB40C-208ENST00000564703 UHRF1BP1LA0JNW5 1464 aa25.73■■□□□ 1.71
RAB40C-208ENST00000564703 FHOD3Q2V2M9 1422 aa25.73■■□□□ 1.71
RAB40C-208ENST00000564703 PLB1Q6P1J6 1458 aa25.71■■□□□ 1.71
RAB40C-208ENST00000564703 ABCC2Q92887 1545 aa25.7■■□□□ 1.7
RAB40C-208ENST00000564703 ARHGAP35Q9NRY4 1499 aa25.66■■□□□ 1.7
RAB40C-208ENST00000564703 CLIP1P30622 1438 aa25.64■■□□□ 1.7
RAB40C-208ENST00000564703 ABCA8O94911 1581 aa25.64■■□□□ 1.69
RAB40C-208ENST00000564703 ATP1B4Q9UN42 357 aaPredicted RBP25.63■■□□□ 1.69
RAB40C-208ENST00000564703 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.62■■□□□ 1.69
RAB40C-208ENST00000564703 HNRNPUL2Q1KMD3 747 aaKnown RBP25.62■■□□□ 1.69
RAB40C-208ENST00000564703 FMN1Q68DA7 1419 aa25.62■■□□□ 1.69
RAB40C-208ENST00000564703 ARID3CA6NKF2 412 aa25.61■■□□□ 1.69
RAB40C-208ENST00000564703 KDM5BQ9UGL1 1544 aa25.61■■□□□ 1.69
RAB40C-208ENST00000564703 MAPKBP1O60336 1514 aa25.58■■□□□ 1.68
RAB40C-208ENST00000564703 RAPGEF6Q8TEU7 1601 aa25.57■■□□□ 1.68
RAB40C-208ENST00000564703 FAM69CQ0P6D2 419 aa25.55■■□□□ 1.68
RAB40C-208ENST00000564703 CEP162Q5TB80 1403 aa25.54■■□□□ 1.68
RAB40C-208ENST00000564703 ASXL2Q76L83 1435 aa25.54■■□□□ 1.68
RAB40C-208ENST00000564703 ZCCHC11Q5TAX3 1644 aaKnown RBP25.52■■□□□ 1.68
RAB40C-208ENST00000564703 ATP10BO94823 1461 aa25.5■■□□□ 1.67
RAB40C-208ENST00000564703 KCNH8Q96L42 1107 aa25.49■■□□□ 1.67
RAB40C-208ENST00000564703 ABCC10Q5T3U5 1492 aa25.47■■□□□ 1.67
RAB40C-208ENST00000564703 PLEKHD1A6NEE1 506 aa25.47■■□□□ 1.67
RAB40C-208ENST00000564703 NUP153P49790 1475 aaKnown RBP25.46■■□□□ 1.67
RAB40C-208ENST00000564703 CDK11AQ9UQ88 783 aaPredicted RBP25.43■■□□□ 1.66
RAB40C-208ENST00000564703 WDR7Q9Y4E6 1490 aa25.41■■□□□ 1.66
RAB40C-208ENST00000564703 HECW1Q76N89 1606 aa25.39■■□□□ 1.66
RAB40C-208ENST00000564703 CASKIN1Q8WXD9 1431 aa25.38■■□□□ 1.65
RAB40C-208ENST00000564703 KIF13AQ9H1H9 1805 aa25.37■■□□□ 1.65
RAB40C-208ENST00000564703 DIP2BQ9P265 1576 aa25.37■■□□□ 1.65
RAB40C-208ENST00000564703 EPRSP07814 1512 aaKnown RBP25.36■■□□□ 1.65
RAB40C-208ENST00000564703 FYCO1Q9BQS8 1478 aa25.31■■□□□ 1.64
RAB40C-208ENST00000564703 GLI2P10070 1586 aa25.31■■□□□ 1.64
RAB40C-208ENST00000564703 CDK13Q14004 1512 aaKnown RBP25.3■■□□□ 1.64
RAB40C-208ENST00000564703 PCF11O94913 1555 aaKnown RBP25.29■■□□□ 1.64
RAB40C-208ENST00000564703 CCDC18Q5T9S5 1454 aa25.28■■□□□ 1.64
RAB40C-208ENST00000564703 TSPOAP1O95153 1857 aa25.26■■□□□ 1.63
RAB40C-208ENST00000564703 CD109Q6YHK3 1445 aa25.23■■□□□ 1.63
RAB40C-208ENST00000564703 VPS8Q8N3P4 1428 aa25.22■■□□□ 1.63
RAB40C-208ENST00000564703 APLP2Q06481 763 aa25.18■■□□□ 1.62
RAB40C-208ENST00000564703 MAP3K4Q9Y6R4 1608 aa25.17■■□□□ 1.62
RAB40C-208ENST00000564703 LRRIQ1Q96JM4 1722 aa25.17■■□□□ 1.62
RAB40C-208ENST00000564703 CFAP43Q8NDM7 1665 aa25.17■■□□□ 1.62
RAB40C-208ENST00000564703 TROQ12816 1431 aaPredicted RBP25.16■■□□□ 1.62
RAB40C-208ENST00000564703 TEX14Q8IWB6 1497 aa25.15■■□□□ 1.62
RAB40C-208ENST00000564703 ABCA9Q8IUA7 1624 aa25.12■■□□□ 1.61
RAB40C-208ENST00000564703 MTUS2Q5JR59 1369 aa25.12■■□□□ 1.61
RAB40C-208ENST00000564703 MAGI3Q5TCQ9 1506 aa25.1■■□□□ 1.61
RAB40C-208ENST00000564703 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.07■■□□□ 1.6
RAB40C-208ENST00000564703 KIF14Q15058 1648 aa25.06■■□□□ 1.6
RAB40C-208ENST00000564703 PPRC1Q5VV67 1664 aaKnown RBP25.05■■□□□ 1.6
RAB40C-208ENST00000564703 PHLDB1Q86UU1 1377 aa25.03■■□□□ 1.6
RAB40C-208ENST00000564703 EFCAB2Q5VUJ9 269 aa25.01■■□□□ 1.59
RAB40C-208ENST00000564703 PLCH2O75038 1416 aa25■■□□□ 1.59
RAB40C-208ENST00000564703 KDM6BO15054 1643 aa24.99■■□□□ 1.59
RAB40C-208ENST00000564703 TTC37Q6PGP7 1564 aa24.99■■□□□ 1.59
RAB40C-208ENST00000564703 TIAM1Q13009 1591 aa24.97■■□□□ 1.59
RAB40C-208ENST00000564703 MAP3K1Q13233 1512 aa24.96■■□□□ 1.59
RAB40C-208ENST00000564703 NEO1Q92859 1461 aa24.96■■□□□ 1.59
RAB40C-208ENST00000564703 FANCAO15360 1455 aa24.96■■□□□ 1.59
RAB40C-208ENST00000564703 CCNB3Q8WWL7 1395 aa24.94■■□□□ 1.58
RAB40C-208ENST00000564703 EHBP1L1Q8N3D4 1523 aa24.94■■□□□ 1.58
RAB40C-208ENST00000564703 MYO5CQ9NQX4 1742 aa24.93■■□□□ 1.58
RAB40C-208ENST00000564703 KANK4Q5T7N3 995 aaPredicted RBP24.93■■□□□ 1.58
RAB40C-208ENST00000564703 AKNAQ7Z591 1439 aa24.92■■□□□ 1.58
RAB40C-208ENST00000564703 LRRC9Q6ZRR7 1453 aa24.9■■□□□ 1.58
RAB40C-208ENST00000564703 CFDP1Q9UEE9 299 aaPredicted RBP24.9■■□□□ 1.58
RAB40C-208ENST00000564703 ZNF777Q9ULD5 760 aaPredicted RBP24.9■■□□□ 1.58
RAB40C-208ENST00000564703 ARHGAP5Q13017 1502 aa24.9■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms