RNA–Protein interactions for RNA: ENST00000563854.1

NME3-205, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 5

Gene NME3, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-205ENST00000563854 PRG4Q92954 1404 aaPredicted RBP30.51■■■□□ 2.47
NME3-205ENST00000563854 JPH4Q96JJ6 628 aa30.48■■■□□ 2.47
NME3-205ENST00000563854 CARMIL1Q5VZK9 1371 aa30.39■■■□□ 2.45
NME3-205ENST00000563854 KIAA0586Q9BVV6 1533 aa30.37■■■□□ 2.45
NME3-205ENST00000563854 IQGAP2Q13576 1575 aa30.17■■■□□ 2.42
NME3-205ENST00000563854 RAPGEF2Q9Y4G8 1499 aa30.16■■■□□ 2.42
NME3-205ENST00000563854 TTBK1Q5TCY1 1321 aaPredicted RBP30.16■■■□□ 2.42
NME3-205ENST00000563854 ADCY10Q96PN6 1610 aa30.13■■■□□ 2.41
NME3-205ENST00000563854 NPM1P06748 294 aaKnown RBP eCLIP30.12■■■□□ 2.41
NME3-205ENST00000563854 CARMIL2Q6F5E8 1435 aa30.1■■■□□ 2.41
NME3-205ENST00000563854 PTPRGP23470 1445 aa30.06■■■□□ 2.4
NME3-205ENST00000563854 KIF13AQ9H1H9 1805 aa30.03■■■□□ 2.4
NME3-205ENST00000563854 TNIKQ9UKE5 1360 aa30.03■■■□□ 2.4
NME3-205ENST00000563854 MAPKBP1O60336 1514 aa29.99■■■□□ 2.39
NME3-205ENST00000563854 DISP1Q96F81 1524 aa29.97■■■□□ 2.39
NME3-205ENST00000563854 UGGT2Q9NYU1 1516 aa29.95■■■□□ 2.38
NME3-205ENST00000563854 CTTNBP2Q8WZ74 1663 aa29.95■■■□□ 2.38
NME3-205ENST00000563854 FAM69CQ0P6D2 419 aa29.94■■■□□ 2.38
NME3-205ENST00000563854 ABCC10Q5T3U5 1492 aa29.93■■■□□ 2.38
NME3-205ENST00000563854 DIP2BQ9P265 1576 aa29.9■■■□□ 2.38
NME3-205ENST00000563854 KIAA0556O60303 1618 aa29.89■■■□□ 2.38
NME3-205ENST00000563854 PRXQ9BXM0 1461 aa29.88■■■□□ 2.37
NME3-205ENST00000563854 ABCC2Q92887 1545 aa29.86■■■□□ 2.37
NME3-205ENST00000563854 UACAQ9BZF9 1416 aa29.84■■■□□ 2.37
NME3-205ENST00000563854 UHRF1BP1LA0JNW5 1464 aa29.8■■■□□ 2.36
NME3-205ENST00000563854 GOLGA3Q08378 1498 aa29.75■■■□□ 2.35
NME3-205ENST00000563854 ASXL2Q76L83 1435 aa29.75■■■□□ 2.35
NME3-205ENST00000563854 CSRNP3Q8WYN3 585 aa29.74■■■□□ 2.35
NME3-205ENST00000563854 TSPOAP1O95153 1857 aa29.74■■■□□ 2.35
NME3-205ENST00000563854 PLB1Q6P1J6 1458 aa29.7■■■□□ 2.35
NME3-205ENST00000563854 ZCCHC11Q5TAX3 1644 aaKnown RBP29.68■■■□□ 2.34
NME3-205ENST00000563854 KDM5BQ9UGL1 1544 aa29.67■■■□□ 2.34
NME3-205ENST00000563854 FAM9AQ8IZU1 332 aaPredicted RBP29.67■■■□□ 2.34
NME3-205ENST00000563854 EEA1Q15075 1411 aa29.66■■■□□ 2.34
NME3-205ENST00000563854 KDM6BO15054 1643 aa29.61■■■□□ 2.33
NME3-205ENST00000563854 P3H3Q8IVL6 736 aa29.6■■■□□ 2.33
NME3-205ENST00000563854 AEBP2Q6ZN18 517 aaPredicted RBP29.59■■■□□ 2.33
NME3-205ENST00000563854 GLI2P10070 1586 aa29.58■■■□□ 2.33
NME3-205ENST00000563854 ABCA8O94911 1581 aa29.57■■■□□ 2.32
NME3-205ENST00000563854 EPRSP07814 1512 aaKnown RBP29.55■■■□□ 2.32
NME3-205ENST00000563854 RANGAP1P46060 587 aaPredicted RBP29.53■■■□□ 2.32
NME3-205ENST00000563854 PPRC1Q5VV67 1664 aaKnown RBP29.5■■■□□ 2.31
NME3-205ENST00000563854 WDR7Q9Y4E6 1490 aa29.5■■■□□ 2.31
NME3-205ENST00000563854 SAMD9Q5K651 1589 aa29.48■■■□□ 2.31
NME3-205ENST00000563854 ARID3CA6NKF2 412 aa29.47■■■□□ 2.31
NME3-205ENST00000563854 MAP3K4Q9Y6R4 1608 aa29.46■■■□□ 2.31
NME3-205ENST00000563854 CHIC1Q5VXU3 224 aa29.46■■■□□ 2.31
NME3-205ENST00000563854 KIF21BO75037 1637 aa29.44■■■□□ 2.3
NME3-205ENST00000563854 EHMT2Q96KQ7 1210 aa29.42■■■□□ 2.3
NME3-205ENST00000563854 KCNH8Q96L42 1107 aa29.4■■■□□ 2.3
NME3-205ENST00000563854 TEX14Q8IWB6 1497 aa29.37■■■□□ 2.29
NME3-205ENST00000563854 FHOD3Q2V2M9 1422 aa29.36■■■□□ 2.29
NME3-205ENST00000563854 RAPGEF6Q8TEU7 1601 aa29.35■■■□□ 2.29
NME3-205ENST00000563854 ATP10BO94823 1461 aa29.32■■■□□ 2.28
NME3-205ENST00000563854 CFAP43Q8NDM7 1665 aa29.3■■■□□ 2.28
NME3-205ENST00000563854 CD109Q6YHK3 1445 aa29.29■■■□□ 2.28
NME3-205ENST00000563854 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.28■■■□□ 2.28
NME3-205ENST00000563854 HNRNPUL2Q1KMD3 747 aaKnown RBP29.28■■■□□ 2.28
NME3-205ENST00000563854 COL17A1Q9UMD9 1497 aaPredicted RBP29.26■■■□□ 2.27
NME3-205ENST00000563854 UBTFP17480 764 aaKnown RBP29.26■■■□□ 2.27
NME3-205ENST00000563854 EFCAB5A4FU69 1503 aa29.25■■■□□ 2.27
NME3-205ENST00000563854 NUP153P49790 1475 aaKnown RBP29.22■■■□□ 2.27
NME3-205ENST00000563854 MAGI3Q5TCQ9 1506 aa29.21■■■□□ 2.27
NME3-205ENST00000563854 ABCA9Q8IUA7 1624 aa29.12■■■□□ 2.25
NME3-205ENST00000563854 KDM4FA0A1W2PPD8 638 aa29.11■■■□□ 2.25
NME3-205ENST00000563854 ARHGAP35Q9NRY4 1499 aa29.04■■■□□ 2.24
NME3-205ENST00000563854 PLEKHD1A6NEE1 506 aa29.03■■■□□ 2.24
NME3-205ENST00000563854 ATP1B4Q9UN42 357 aaPredicted RBP29.03■■■□□ 2.24
NME3-205ENST00000563854 CDK13Q14004 1512 aaKnown RBP29.02■■■□□ 2.24
NME3-205ENST00000563854 ADGRL1O94910 1474 aa29.02■■■□□ 2.24
NME3-205ENST00000563854 FMN1Q68DA7 1419 aa28.99■■■□□ 2.23
NME3-205ENST00000563854 ARAP3Q8WWN8 1544 aa28.97■■■□□ 2.23
NME3-205ENST00000563854 HECW1Q76N89 1606 aa28.97■■■□□ 2.23
NME3-205ENST00000563854 NEO1Q92859 1461 aa28.92■■■□□ 2.22
NME3-205ENST00000563854 PHLDB1Q86UU1 1377 aa28.9■■■□□ 2.22
NME3-205ENST00000563854 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.9■■■□□ 2.223e-22■□□□□ 10.7
NME3-205ENST00000563854 TTC37Q6PGP7 1564 aa28.9■■■□□ 2.22
NME3-205ENST00000563854 RAPGEF3O95398 923 aa28.87■■■□□ 2.21
NME3-205ENST00000563854 FANCAO15360 1455 aa28.83■■■□□ 2.21
NME3-205ENST00000563854 CFAP74Q9C0B2 1584 aa28.82■■■□□ 2.2
NME3-205ENST00000563854 FRMPD1Q5SYB0 1578 aa28.81■■■□□ 2.2
NME3-205ENST00000563854 AKNAQ7Z591 1439 aa28.78■■■□□ 2.2
NME3-205ENST00000563854 CDK11AQ9UQ88 783 aaPredicted RBP28.78■■■□□ 2.2
NME3-205ENST00000563854 PCF11O94913 1555 aaKnown RBP28.78■■■□□ 2.2
NME3-205ENST00000563854 LRRIQ1Q96JM4 1722 aa28.77■■■□□ 2.2
NME3-205ENST00000563854 DENND4BO75064 1496 aaPredicted RBP28.76■■■□□ 2.19
NME3-205ENST00000563854 KIF14Q15058 1648 aa28.73■■■□□ 2.19
NME3-205ENST00000563854 CLIP1P30622 1438 aa28.71■■■□□ 2.19
NME3-205ENST00000563854 TROQ12816 1431 aaPredicted RBP28.71■■■□□ 2.19
NME3-205ENST00000563854 RICTORQ6R327 1708 aa28.71■■■□□ 2.19
NME3-205ENST00000563854 CASKIN1Q8WXD9 1431 aa28.7■■■□□ 2.19
NME3-205ENST00000563854 MYO5CQ9NQX4 1742 aa28.7■■■□□ 2.19
NME3-205ENST00000563854 PLCH2O75038 1416 aa28.69■■■□□ 2.18
NME3-205ENST00000563854 CCDC18Q5T9S5 1454 aa28.66■■■□□ 2.18
NME3-205ENST00000563854 ARHGEF40Q8TER5 1519 aa28.66■■■□□ 2.18
NME3-205ENST00000563854 ARID4BQ4LE39 1312 aaPredicted RBP28.65■■■□□ 2.18
NME3-205ENST00000563854 SCAPERQ9BY12 1400 aa28.62■■■□□ 2.17
NME3-205ENST00000563854 FYCO1Q9BQS8 1478 aa28.62■■■□□ 2.17
NME3-205ENST00000563854 ARHGAP5Q13017 1502 aa28.61■■■□□ 2.17
NME3-205ENST00000563854 EFCAB2Q5VUJ9 269 aa28.6■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms