RNA–Protein interactions for RNA: ENST00000563448.1

SMG1-208, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,016 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-208ENST00000563448 CEP170Q5SW79 1584 aa16.3■□□□□ 0.2
SMG1-208ENST00000563448 CLIP1P30622 1438 aa16.28■□□□□ 0.2
SMG1-208ENST00000563448 FBLN2P98095 1184 aa16.28■□□□□ 0.2
SMG1-208ENST00000563448 IQGAP2Q13576 1575 aa16.26■□□□□ 0.19
SMG1-208ENST00000563448 RANGAP1P46060 587 aaPredicted RBP16.26■□□□□ 0.19
SMG1-208ENST00000563448 NUP160Q12769 1436 aa16.25■□□□□ 0.19
SMG1-208ENST00000563448 KIAA0586Q9BVV6 1533 aa16.23■□□□□ 0.19
SMG1-208ENST00000563448 ARHGAP35Q9NRY4 1499 aa16.22■□□□□ 0.19
SMG1-208ENST00000563448 SAMD9Q5K651 1589 aa16.21■□□□□ 0.19
SMG1-208ENST00000563448 EFCAB5A4FU69 1503 aa16.19■□□□□ 0.18
SMG1-208ENST00000563448 ARAP1Q96P48 1450 aa16.19■□□□□ 0.18
SMG1-208ENST00000563448 UGGT2Q9NYU1 1516 aa16.17■□□□□ 0.18
SMG1-208ENST00000563448 CLASP1Q7Z460 1538 aa16.13■□□□□ 0.17
SMG1-208ENST00000563448 SHROOM2Q13796 1616 aa16.12■□□□□ 0.17
SMG1-208ENST00000563448 KIAA0556O60303 1618 aa16.11■□□□□ 0.17
SMG1-208ENST00000563448 VPS8Q8N3P4 1428 aa16.11■□□□□ 0.17
SMG1-208ENST00000563448 P3H3Q8IVL6 736 aa16.11■□□□□ 0.17
SMG1-208ENST00000563448 DISP1Q96F81 1524 aa16.1■□□□□ 0.17
SMG1-208ENST00000563448 FHOD3Q2V2M9 1422 aa16.1■□□□□ 0.17
SMG1-208ENST00000563448 JPH4Q96JJ6 628 aa16.07■□□□□ 0.16
SMG1-208ENST00000563448 PCF11O94913 1555 aaKnown RBP16.03■□□□□ 0.16
SMG1-208ENST00000563448 CARMIL2Q6F5E8 1435 aa16.01■□□□□ 0.15
SMG1-208ENST00000563448 PRG4Q92954 1404 aaPredicted RBP16.01■□□□□ 0.15
SMG1-208ENST00000563448 LRRIQ1Q96JM4 1722 aa16.01■□□□□ 0.15
SMG1-208ENST00000563448 OSCARQ8IYS5 282 aa16.01■□□□□ 0.15
SMG1-208ENST00000563448 FMN1Q68DA7 1419 aa16■□□□□ 0.15
SMG1-208ENST00000563448 ERCC6L2Q5T890 1561 aa16■□□□□ 0.15
SMG1-208ENST00000563448 DNAJC5Q9H3Z4 198 aa15.99■□□□□ 0.15
SMG1-208ENST00000563448 CASKIN1Q8WXD9 1431 aa15.96■□□□□ 0.15
SMG1-208ENST00000563448 FYCO1Q9BQS8 1478 aa15.96■□□□□ 0.15
SMG1-208ENST00000563448 RAPGEF6Q8TEU7 1601 aa15.94■□□□□ 0.14
SMG1-208ENST00000563448 CFAP43Q8NDM7 1665 aa15.94■□□□□ 0.14
SMG1-208ENST00000563448 HECW1Q76N89 1606 aa15.93■□□□□ 0.14
SMG1-208ENST00000563448 TTBK1Q5TCY1 1321 aaPredicted RBP15.92■□□□□ 0.14
SMG1-208ENST00000563448 TIAM1Q13009 1591 aa15.91■□□□□ 0.14
SMG1-208ENST00000563448 PPARGC1BQ86YN6 1023 aaKnown RBP15.9■□□□□ 0.14
SMG1-208ENST00000563448 MAP3K1Q13233 1512 aa15.9■□□□□ 0.14
SMG1-208ENST00000563448 ABCA8O94911 1581 aa15.89■□□□□ 0.13
SMG1-208ENST00000563448 APLP2Q06481 763 aa15.88■□□□□ 0.13
SMG1-208ENST00000563448 ATP1B4Q9UN42 357 aaPredicted RBP15.88■□□□□ 0.13
SMG1-208ENST00000563448 PLB1Q6P1J6 1458 aa15.88■□□□□ 0.13
SMG1-208ENST00000563448 PTPRGP23470 1445 aa15.87■□□□□ 0.13
SMG1-208ENST00000563448 NUP153P49790 1475 aaKnown RBP15.85■□□□□ 0.13
SMG1-208ENST00000563448 EPRSP07814 1512 aaKnown RBP15.84■□□□□ 0.13
SMG1-208ENST00000563448 CCDC18Q5T9S5 1454 aa15.83■□□□□ 0.13
SMG1-208ENST00000563448 KANK4Q5T7N3 995 aaPredicted RBP15.82■□□□□ 0.12
SMG1-208ENST00000563448 CDK13Q14004 1512 aaKnown RBP15.82■□□□□ 0.12
SMG1-208ENST00000563448 LRRC9Q6ZRR7 1453 aa15.81■□□□□ 0.12
SMG1-208ENST00000563448 UACAQ9BZF9 1416 aa15.8■□□□□ 0.12
SMG1-208ENST00000563448 ARHGEF11O15085 1522 aa15.79■□□□□ 0.12
SMG1-208ENST00000563448 ABCC2Q92887 1545 aa15.78■□□□□ 0.12
SMG1-208ENST00000563448 RIMBP3CA6NJZ7 1639 aa15.78■□□□□ 0.12
SMG1-208ENST00000563448 RIMBP3BA6NNM3 1639 aa15.78■□□□□ 0.12
SMG1-208ENST00000563448 RIMBP3Q9UFD9 1639 aa15.78■□□□□ 0.12
SMG1-208ENST00000563448 MAGI3Q5TCQ9 1506 aa15.78■□□□□ 0.12
SMG1-208ENST00000563448 ARID3CA6NKF2 412 aa15.77■□□□□ 0.11
SMG1-208ENST00000563448 ADCY10Q96PN6 1610 aa15.75■□□□□ 0.11
SMG1-208ENST00000563448 UHRF1BP1LA0JNW5 1464 aa15.75■□□□□ 0.11
SMG1-208ENST00000563448 ATP10BO94823 1461 aa15.75■□□□□ 0.11
SMG1-208ENST00000563448 EHBP1L1Q8N3D4 1523 aa15.75■□□□□ 0.11
SMG1-208ENST00000563448 ZCCHC11Q5TAX3 1644 aaKnown RBP15.73■□□□□ 0.11
SMG1-208ENST00000563448 SUPT6HQ7KZ85 1726 aaKnown RBP15.73■□□□□ 0.11
SMG1-208ENST00000563448 MTUS2Q5JR59 1369 aa15.71■□□□□ 0.11
SMG1-208ENST00000563448 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.7■□□□□ 0.1
SMG1-208ENST00000563448 TRIM26Q12899 539 aaPredicted RBP15.7■□□□□ 0.1
SMG1-208ENST00000563448 HNRNPUL2Q1KMD3 747 aaKnown RBP15.7■□□□□ 0.1
SMG1-208ENST00000563448 KDM5BQ9UGL1 1544 aa15.69■□□□□ 0.1
SMG1-208ENST00000563448 KIF14Q15058 1648 aa15.66■□□□□ 0.1
SMG1-208ENST00000563448 NCOA2Q15596 1464 aa15.65■□□□□ 0.1
SMG1-208ENST00000563448 CDK11AQ9UQ88 783 aaPredicted RBP15.65■□□□□ 0.1
SMG1-208ENST00000563448 TROQ12816 1431 aaPredicted RBP15.65■□□□□ 0.1
SMG1-208ENST00000563448 PHLDB1Q86UU1 1377 aa15.64■□□□□ 0.09
SMG1-208ENST00000563448 PCGF6Q9BYE7 350 aa15.62■□□□□ 0.09
SMG1-208ENST00000563448 PLEKHD1A6NEE1 506 aa15.61■□□□□ 0.09
SMG1-208ENST00000563448 RRBP1Q9P2E9 1410 aaKnown RBP15.6■□□□□ 0.09
SMG1-208ENST00000563448 CDC42BPAQ5VT25 1732 aa15.59■□□□□ 0.09
SMG1-208ENST00000563448 CYB5RLQ6IPT4 315 aa15.59■□□□□ 0.09
SMG1-208ENST00000563448 ITSN2Q9NZM3 1697 aa15.58■□□□□ 0.08
SMG1-208ENST00000563448 MYOM3Q5VTT5 1437 aa15.57■□□□□ 0.08
SMG1-208ENST00000563448 ABCC10Q5T3U5 1492 aa15.56■□□□□ 0.08
SMG1-208ENST00000563448 FGD6Q6ZV73 1430 aa15.54■□□□□ 0.08
SMG1-208ENST00000563448 CCNB3Q8WWL7 1395 aa15.54■□□□□ 0.08
SMG1-208ENST00000563448 CDC42BPBQ9Y5S2 1711 aa15.54■□□□□ 0.08
SMG1-208ENST00000563448 PTPN23Q9H3S7 1636 aa15.54■□□□□ 0.08
SMG1-208ENST00000563448 TTC37Q6PGP7 1564 aa15.54■□□□□ 0.08
SMG1-208ENST00000563448 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.53■□□□□ 0.08
SMG1-208ENST00000563448 MYO5CQ9NQX4 1742 aa15.53■□□□□ 0.08
SMG1-208ENST00000563448 WDR7Q9Y4E6 1490 aa15.53■□□□□ 0.08
SMG1-208ENST00000563448 NPM1P06748 294 aaKnown RBP eCLIP15.53■□□□□ 0.08
SMG1-208ENST00000563448 ASXL2Q76L83 1435 aa15.53■□□□□ 0.08
SMG1-208ENST00000563448 GPATCH8Q9UKJ3 1502 aaKnown RBP15.51■□□□□ 0.07
SMG1-208ENST00000563448 PREX2Q70Z35 1606 aa15.51■□□□□ 0.07
SMG1-208ENST00000563448 MAPKBP1O60336 1514 aa15.49■□□□□ 0.07
SMG1-208ENST00000563448 MIA2Q96PC5 1412 aa15.49■□□□□ 0.07
SMG1-208ENST00000563448 KCNH8Q96L42 1107 aa15.49■□□□□ 0.07
SMG1-208ENST00000563448 TCOF1Q13428 1488 aaKnown RBP15.48■□□□□ 0.07
SMG1-208ENST00000563448 ABCA9Q8IUA7 1624 aa15.48■□□□□ 0.07
SMG1-208ENST00000563448 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.47■□□□□ 0.07
SMG1-208ENST00000563448 FAM50AQ14320 339 aaKnown RBP15.46■□□□□ 0.07
SMG1-208ENST00000563448 CAMSAP2Q08AD1 1489 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms