RNA–Protein interactions for RNA: ENST00000563109.1

RAB40C-207, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 3

Gene RAB40C, Length 710 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-207ENST00000563109 KIAA0586Q9BVV6 1533 aa30.88■■■□□ 2.53
RAB40C-207ENST00000563109 IQGAP2Q13576 1575 aa30.83■■■□□ 2.53
RAB40C-207ENST00000563109 SHROOM2Q13796 1616 aa30.79■■■□□ 2.52
RAB40C-207ENST00000563109 EHMT2Q96KQ7 1210 aa30.76■■■□□ 2.51
RAB40C-207ENST00000563109 DNAJC5Q9H3Z4 198 aa30.74■■■□□ 2.51
RAB40C-207ENST00000563109 UBTFP17480 764 aaKnown RBP30.71■■■□□ 2.51
RAB40C-207ENST00000563109 JPH4Q96JJ6 628 aa30.68■■■□□ 2.5
RAB40C-207ENST00000563109 ARHGEF11O15085 1522 aa30.67■■■□□ 2.5
RAB40C-207ENST00000563109 RIMBP3CA6NJZ7 1639 aa30.65■■■□□ 2.5
RAB40C-207ENST00000563109 RIMBP3BA6NNM3 1639 aa30.65■■■□□ 2.5
RAB40C-207ENST00000563109 RIMBP3Q9UFD9 1639 aa30.65■■■□□ 2.5
RAB40C-207ENST00000563109 UGGT2Q9NYU1 1516 aa30.64■■■□□ 2.5
RAB40C-207ENST00000563109 PRG4Q92954 1404 aaPredicted RBP30.63■■■□□ 2.49
RAB40C-207ENST00000563109 ERCC6L2Q5T890 1561 aa30.58■■■□□ 2.49
RAB40C-207ENST00000563109 CARMIL2Q6F5E8 1435 aa30.57■■■□□ 2.48
RAB40C-207ENST00000563109 KIAA0556O60303 1618 aa30.53■■■□□ 2.48
RAB40C-207ENST00000563109 TNIKQ9UKE5 1360 aa30.52■■■□□ 2.48
RAB40C-207ENST00000563109 DISP1Q96F81 1524 aa30.51■■■□□ 2.47
RAB40C-207ENST00000563109 SAMD9Q5K651 1589 aa30.48■■■□□ 2.47
RAB40C-207ENST00000563109 EFCAB5A4FU69 1503 aa30.47■■■□□ 2.47
RAB40C-207ENST00000563109 RANGAP1P46060 587 aaPredicted RBP30.46■■■□□ 2.47
RAB40C-207ENST00000563109 ARAP1Q96P48 1450 aa30.44■■■□□ 2.46
RAB40C-207ENST00000563109 LOC105371045A0A1W2PR82 267 aa30.44■■■□□ 2.46
RAB40C-207ENST00000563109 PTPRGP23470 1445 aa30.32■■■□□ 2.44
RAB40C-207ENST00000563109 CLIP1P30622 1438 aa30.31■■■□□ 2.44
RAB40C-207ENST00000563109 P3H3Q8IVL6 736 aa30.31■■■□□ 2.44
RAB40C-207ENST00000563109 ARHGAP35Q9NRY4 1499 aa30.31■■■□□ 2.44
RAB40C-207ENST00000563109 CEP162Q5TB80 1403 aa30.3■■■□□ 2.44
RAB40C-207ENST00000563109 TTBK1Q5TCY1 1321 aaPredicted RBP30.29■■■□□ 2.44
RAB40C-207ENST00000563109 CYB5RLQ6IPT4 315 aa30.29■■■□□ 2.44
RAB40C-207ENST00000563109 FHOD3Q2V2M9 1422 aa30.29■■■□□ 2.44
RAB40C-207ENST00000563109 UACAQ9BZF9 1416 aa30.15■■■□□ 2.42
RAB40C-207ENST00000563109 FMN1Q68DA7 1419 aa30.14■■■□□ 2.42
RAB40C-207ENST00000563109 ADCY10Q96PN6 1610 aa30.14■■■□□ 2.41
RAB40C-207ENST00000563109 ABCA8O94911 1581 aa30.13■■■□□ 2.41
RAB40C-207ENST00000563109 ABCC2Q92887 1545 aa30.12■■■□□ 2.41
RAB40C-207ENST00000563109 PLB1Q6P1J6 1458 aa30.12■■■□□ 2.41
RAB40C-207ENST00000563109 RAPGEF6Q8TEU7 1601 aa30.11■■■□□ 2.41
RAB40C-207ENST00000563109 UHRF1BP1LA0JNW5 1464 aa30.11■■■□□ 2.41
RAB40C-207ENST00000563109 HECW1Q76N89 1606 aa30.01■■■□□ 2.39
RAB40C-207ENST00000563109 PCF11O94913 1555 aaKnown RBP29.99■■■□□ 2.39
RAB40C-207ENST00000563109 NPM1P06748 294 aaKnown RBP eCLIP29.98■■■□□ 2.39
RAB40C-207ENST00000563109 ZCCHC11Q5TAX3 1644 aaKnown RBP29.96■■■□□ 2.39
RAB40C-207ENST00000563109 KDM5BQ9UGL1 1544 aa29.95■■■□□ 2.38
RAB40C-207ENST00000563109 NUP153P49790 1475 aaKnown RBP29.94■■■□□ 2.38
RAB40C-207ENST00000563109 CASKIN1Q8WXD9 1431 aa29.94■■■□□ 2.38
RAB40C-207ENST00000563109 FYCO1Q9BQS8 1478 aa29.93■■■□□ 2.38
RAB40C-207ENST00000563109 VPS8Q8N3P4 1428 aa29.9■■■□□ 2.38
RAB40C-207ENST00000563109 ATP1B4Q9UN42 357 aaPredicted RBP29.89■■■□□ 2.38
RAB40C-207ENST00000563109 MAPKBP1O60336 1514 aa29.86■■■□□ 2.37
RAB40C-207ENST00000563109 ARID3CA6NKF2 412 aa29.84■■■□□ 2.37
RAB40C-207ENST00000563109 ATP10BO94823 1461 aa29.84■■■□□ 2.37
RAB40C-207ENST00000563109 EPRSP07814 1512 aaKnown RBP29.83■■■□□ 2.37
RAB40C-207ENST00000563109 LRRIQ1Q96JM4 1722 aa29.82■■■□□ 2.36
RAB40C-207ENST00000563109 CCDC18Q5T9S5 1454 aa29.82■■■□□ 2.36
RAB40C-207ENST00000563109 CDK13Q14004 1512 aaKnown RBP29.81■■■□□ 2.36
RAB40C-207ENST00000563109 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.8■■■□□ 2.36
RAB40C-207ENST00000563109 HNRNPUL2Q1KMD3 747 aaKnown RBP29.8■■■□□ 2.36
RAB40C-207ENST00000563109 ASXL2Q76L83 1435 aa29.77■■■□□ 2.36
RAB40C-207ENST00000563109 WDR7Q9Y4E6 1490 aa29.73■■■□□ 2.35
RAB40C-207ENST00000563109 CFAP43Q8NDM7 1665 aa29.69■■■□□ 2.34
RAB40C-207ENST00000563109 CDK11AQ9UQ88 783 aaPredicted RBP29.67■■■□□ 2.34
RAB40C-207ENST00000563109 PLEKHD1A6NEE1 506 aa29.64■■■□□ 2.34
RAB40C-207ENST00000563109 DIP2BQ9P265 1576 aa29.64■■■□□ 2.33
RAB40C-207ENST00000563109 TIAM1Q13009 1591 aa29.63■■■□□ 2.33
RAB40C-207ENST00000563109 ABCC10Q5T3U5 1492 aa29.62■■■□□ 2.33
RAB40C-207ENST00000563109 KIF13AQ9H1H9 1805 aa29.6■■■□□ 2.33
RAB40C-207ENST00000563109 APLP2Q06481 763 aa29.59■■■□□ 2.33
RAB40C-207ENST00000563109 MAP3K1Q13233 1512 aa29.59■■■□□ 2.33
RAB40C-207ENST00000563109 TROQ12816 1431 aaPredicted RBP29.57■■■□□ 2.32
RAB40C-207ENST00000563109 TRHP20396 242 aaPredicted RBP29.56■■■□□ 2.32
RAB40C-207ENST00000563109 GLI2P10070 1586 aa29.56■■■□□ 2.32
RAB40C-207ENST00000563109 KIF14Q15058 1648 aa29.55■■■□□ 2.32
RAB40C-207ENST00000563109 KCNH8Q96L42 1107 aa29.54■■■□□ 2.32
RAB40C-207ENST00000563109 MAGI3Q5TCQ9 1506 aa29.54■■■□□ 2.32
RAB40C-207ENST00000563109 EHBP1L1Q8N3D4 1523 aa29.54■■■□□ 2.32
RAB40C-207ENST00000563109 MTUS2Q5JR59 1369 aa29.53■■■□□ 2.32
RAB40C-207ENST00000563109 FAM69CQ0P6D2 419 aa29.51■■■□□ 2.31
RAB40C-207ENST00000563109 ABCA9Q8IUA7 1624 aa29.48■■■□□ 2.31
RAB40C-207ENST00000563109 MAP3K4Q9Y6R4 1608 aa29.46■■■□□ 2.31
RAB40C-207ENST00000563109 LRRC9Q6ZRR7 1453 aa29.45■■■□□ 2.31
RAB40C-207ENST00000563109 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP29.43■■■□□ 2.32e-7■■■□□ 16.2
RAB40C-207ENST00000563109 TTC37Q6PGP7 1564 aa29.43■■■□□ 2.3
RAB40C-207ENST00000563109 SUPT6HQ7KZ85 1726 aaKnown RBP29.42■■■□□ 2.3
RAB40C-207ENST00000563109 TSPOAP1O95153 1857 aa29.4■■■□□ 2.3
RAB40C-207ENST00000563109 MYO5CQ9NQX4 1742 aa29.37■■■□□ 2.29
RAB40C-207ENST00000563109 CD109Q6YHK3 1445 aa29.37■■■□□ 2.29
RAB40C-207ENST00000563109 KANK4Q5T7N3 995 aaPredicted RBP29.33■■■□□ 2.29
RAB40C-207ENST00000563109 PPRC1Q5VV67 1664 aaKnown RBP29.31■■■□□ 2.28
RAB40C-207ENST00000563109 TEX14Q8IWB6 1497 aa29.3■■■□□ 2.28
RAB40C-207ENST00000563109 NCOA2Q15596 1464 aa29.29■■■□□ 2.28
RAB40C-207ENST00000563109 ITSN2Q9NZM3 1697 aa29.29■■■□□ 2.28
RAB40C-207ENST00000563109 PREX2Q70Z35 1606 aa29.29■■■□□ 2.28
RAB40C-207ENST00000563109 CDC42BPAQ5VT25 1732 aa29.28■■■□□ 2.28
RAB40C-207ENST00000563109 CFAP74Q9C0B2 1584 aa29.27■■■□□ 2.28
RAB40C-207ENST00000563109 CCNB3Q8WWL7 1395 aa29.26■■■□□ 2.28
RAB40C-207ENST00000563109 ARAP3Q8WWN8 1544 aa29.25■■■□□ 2.27
RAB40C-207ENST00000563109 PLCH2O75038 1416 aa29.24■■■□□ 2.27
RAB40C-207ENST00000563109 ARHGAP5Q13017 1502 aa29.23■■■□□ 2.27
RAB40C-207ENST00000563109 CDC42BPBQ9Y5S2 1711 aa29.23■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 103 ms