RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 PRXQ9BXM0 1461 aa28.02■■■□□ 2.08
CLK3-207ENST00000562389 KIAA0586Q9BVV6 1533 aa28.01■■■□□ 2.07
CLK3-207ENST00000562389 ARAP1Q96P48 1450 aa27.95■■■□□ 2.07
CLK3-207ENST00000562389 CSRNP3Q8WYN3 585 aa27.95■■■□□ 2.06
CLK3-207ENST00000562389 ERCC6L2Q5T890 1561 aa27.91■■■□□ 2.06
CLK3-207ENST00000562389 JPH4Q96JJ6 628 aa27.9■■■□□ 2.06
CLK3-207ENST00000562389 IQGAP2Q13576 1575 aa27.89■■■□□ 2.05
CLK3-207ENST00000562389 PRG4Q92954 1404 aaPredicted RBP27.87■■■□□ 2.05
CLK3-207ENST00000562389 CTTNBP2Q8WZ74 1663 aa27.87■■■□□ 2.05
CLK3-207ENST00000562389 FAM9AQ8IZU1 332 aaPredicted RBP27.83■■■□□ 2.05
CLK3-207ENST00000562389 CYB5RLQ6IPT4 315 aa27.82■■■□□ 2.04
CLK3-207ENST00000562389 KIF21BO75037 1637 aa27.81■■■□□ 2.04
CLK3-207ENST00000562389 UGGT2Q9NYU1 1516 aa27.74■■■□□ 2.03
CLK3-207ENST00000562389 CARMIL2Q6F5E8 1435 aa27.69■■■□□ 2.02
CLK3-207ENST00000562389 DISP1Q96F81 1524 aa27.67■■■□□ 2.02
CLK3-207ENST00000562389 KIAA0556O60303 1618 aa27.63■■■□□ 2.01
CLK3-207ENST00000562389 GOLGA3Q08378 1498 aa27.6■■■□□ 2.01
CLK3-207ENST00000562389 TNIKQ9UKE5 1360 aa27.6■■■□□ 2.01
CLK3-207ENST00000562389 PTPRGP23470 1445 aa27.54■■■□□ 2
CLK3-207ENST00000562389 SAMD9Q5K651 1589 aa27.5■■□□□ 1.99
CLK3-207ENST00000562389 ADCY10Q96PN6 1610 aa27.48■■□□□ 1.99
CLK3-207ENST00000562389 UBTFP17480 764 aaKnown RBP27.44■■□□□ 1.98
CLK3-207ENST00000562389 EHMT2Q96KQ7 1210 aa27.43■■□□□ 1.98
CLK3-207ENST00000562389 TTBK1Q5TCY1 1321 aaPredicted RBP27.41■■□□□ 1.98
CLK3-207ENST00000562389 UHRF1BP1LA0JNW5 1464 aa27.39■■□□□ 1.98
CLK3-207ENST00000562389 EFCAB5A4FU69 1503 aa27.39■■□□□ 1.98
CLK3-207ENST00000562389 UACAQ9BZF9 1416 aa27.39■■□□□ 1.97
CLK3-207ENST00000562389 ABCC2Q92887 1545 aa27.36■■□□□ 1.97
CLK3-207ENST00000562389 ABCA8O94911 1581 aa27.31■■□□□ 1.96
CLK3-207ENST00000562389 RANGAP1P46060 587 aaPredicted RBP27.31■■□□□ 1.96
CLK3-207ENST00000562389 P3H3Q8IVL6 736 aa27.31■■□□□ 1.96
CLK3-207ENST00000562389 PLB1Q6P1J6 1458 aa27.3■■□□□ 1.96
CLK3-207ENST00000562389 MAPKBP1O60336 1514 aa27.3■■□□□ 1.96
CLK3-207ENST00000562389 NPM1P06748 294 aaKnown RBP eCLIP27.29■■□□□ 1.96
CLK3-207ENST00000562389 FHOD3Q2V2M9 1422 aa27.27■■□□□ 1.96
CLK3-207ENST00000562389 KDM5BQ9UGL1 1544 aa27.25■■□□□ 1.95
CLK3-207ENST00000562389 ARHGAP35Q9NRY4 1499 aa27.24■■□□□ 1.95
CLK3-207ENST00000562389 ZCCHC11Q5TAX3 1644 aaKnown RBP27.21■■□□□ 1.95
CLK3-207ENST00000562389 RAPGEF6Q8TEU7 1601 aa27.2■■□□□ 1.95
CLK3-207ENST00000562389 TRHP20396 242 aaPredicted RBP27.2■■□□□ 1.94
CLK3-207ENST00000562389 KIF13AQ9H1H9 1805 aa27.15■■□□□ 1.94
CLK3-207ENST00000562389 ABCC10Q5T3U5 1492 aa27.13■■□□□ 1.93
CLK3-207ENST00000562389 DIP2BQ9P265 1576 aa27.11■■□□□ 1.93
CLK3-207ENST00000562389 ASXL2Q76L83 1435 aa27.11■■□□□ 1.93
CLK3-207ENST00000562389 FMN1Q68DA7 1419 aa27.1■■□□□ 1.93
CLK3-207ENST00000562389 CLIP1P30622 1438 aa27.08■■□□□ 1.93
CLK3-207ENST00000562389 NUP153P49790 1475 aaKnown RBP27.07■■□□□ 1.92
CLK3-207ENST00000562389 ATP10BO94823 1461 aa27.05■■□□□ 1.92
CLK3-207ENST00000562389 WDR7Q9Y4E6 1490 aa27.02■■□□□ 1.92
CLK3-207ENST00000562389 LOC105371045A0A1W2PR82 267 aa27.01■■□□□ 1.91
CLK3-207ENST00000562389 CEP162Q5TB80 1403 aa27■■□□□ 1.91
CLK3-207ENST00000562389 HECW1Q76N89 1606 aa27■■□□□ 1.91
CLK3-207ENST00000562389 GLI2P10070 1586 aa27■■□□□ 1.91
CLK3-207ENST00000562389 FAM69CQ0P6D2 419 aa26.99■■□□□ 1.91
CLK3-207ENST00000562389 EPRSP07814 1512 aaKnown RBP26.98■■□□□ 1.91
CLK3-207ENST00000562389 ARID3CA6NKF2 412 aa26.96■■□□□ 1.91
CLK3-207ENST00000562389 PCF11O94913 1555 aaKnown RBP26.92■■□□□ 1.9
CLK3-207ENST00000562389 CASKIN1Q8WXD9 1431 aa26.9■■□□□ 1.9
CLK3-207ENST00000562389 CDK13Q14004 1512 aaKnown RBP26.89■■□□□ 1.89
CLK3-207ENST00000562389 MAP3K4Q9Y6R4 1608 aa26.88■■□□□ 1.89
CLK3-207ENST00000562389 LRRIQ1Q96JM4 1722 aa26.87■■□□□ 1.89
CLK3-207ENST00000562389 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.87■■□□□ 1.89
CLK3-207ENST00000562389 HNRNPUL2Q1KMD3 747 aaKnown RBP26.87■■□□□ 1.89
CLK3-207ENST00000562389 TSPOAP1O95153 1857 aa26.86■■□□□ 1.89
CLK3-207ENST00000562389 FYCO1Q9BQS8 1478 aa26.86■■□□□ 1.89
CLK3-207ENST00000562389 CFAP43Q8NDM7 1665 aa26.84■■□□□ 1.89
CLK3-207ENST00000562389 PPRC1Q5VV67 1664 aaKnown RBP26.82■■□□□ 1.88
CLK3-207ENST00000562389 ATP1B4Q9UN42 357 aaPredicted RBP26.82■■□□□ 1.88
CLK3-207ENST00000562389 CCDC18Q5T9S5 1454 aa26.81■■□□□ 1.88
CLK3-207ENST00000562389 KCNH8Q96L42 1107 aa26.8■■□□□ 1.88
CLK3-207ENST00000562389 PLEKHD1A6NEE1 506 aa26.79■■□□□ 1.88
CLK3-207ENST00000562389 ABCA9Q8IUA7 1624 aa26.78■■□□□ 1.88
CLK3-207ENST00000562389 CD109Q6YHK3 1445 aa26.73■■□□□ 1.87
CLK3-207ENST00000562389 CDK11AQ9UQ88 783 aaPredicted RBP26.72■■□□□ 1.87
CLK3-207ENST00000562389 TEX14Q8IWB6 1497 aa26.72■■□□□ 1.87
CLK3-207ENST00000562389 MAGI3Q5TCQ9 1506 aa26.71■■□□□ 1.87
CLK3-207ENST00000562389 TROQ12816 1431 aaPredicted RBP26.68■■□□□ 1.86
CLK3-207ENST00000562389 VPS8Q8N3P4 1428 aa26.68■■□□□ 1.86
CLK3-207ENST00000562389 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.67■■□□□ 1.86
CLK3-207ENST00000562389 KIF14Q15058 1648 aa26.65■■□□□ 1.86
CLK3-207ENST00000562389 TTC37Q6PGP7 1564 aa26.64■■□□□ 1.86
CLK3-207ENST00000562389 KDM6BO15054 1643 aa26.63■■□□□ 1.85
CLK3-207ENST00000562389 MYO5CQ9NQX4 1742 aa26.54■■□□□ 1.84
CLK3-207ENST00000562389 NEO1Q92859 1461 aa26.53■■□□□ 1.84
CLK3-207ENST00000562389 TIAM1Q13009 1591 aa26.52■■□□□ 1.84
CLK3-207ENST00000562389 CFAP74Q9C0B2 1584 aa26.52■■□□□ 1.84
CLK3-207ENST00000562389 PHLDB1Q86UU1 1377 aa26.51■■□□□ 1.83
CLK3-207ENST00000562389 EHBP1L1Q8N3D4 1523 aa26.5■■□□□ 1.83
CLK3-207ENST00000562389 ARAP3Q8WWN8 1544 aa26.5■■□□□ 1.83
CLK3-207ENST00000562389 COL17A1Q9UMD9 1497 aaPredicted RBP26.49■■□□□ 1.83
CLK3-207ENST00000562389 PLCH2O75038 1416 aa26.49■■□□□ 1.83
CLK3-207ENST00000562389 MTUS2Q5JR59 1369 aa26.48■■□□□ 1.83
CLK3-207ENST00000562389 MAP3K1Q13233 1512 aa26.48■■□□□ 1.83
CLK3-207ENST00000562389 FANCAO15360 1455 aa26.47■■□□□ 1.83
CLK3-207ENST00000562389 PREX2Q70Z35 1606 aa26.44■■□□□ 1.82
CLK3-207ENST00000562389 CDC42BPAQ5VT25 1732 aa26.42■■□□□ 1.82
CLK3-207ENST00000562389 CDC42BPBQ9Y5S2 1711 aa26.42■■□□□ 1.82
CLK3-207ENST00000562389 AKNAQ7Z591 1439 aa26.41■■□□□ 1.82
CLK3-207ENST00000562389 ARHGAP5Q13017 1502 aa26.39■■□□□ 1.81
CLK3-207ENST00000562389 LRRC9Q6ZRR7 1453 aa26.38■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 129.4 ms