RNA–Protein interactions for RNA: ENST00000562118.1

CDH1-204, Transcript of cadherin 1, humanhuman

TSL 2

Gene CDH1, Length 952 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-204ENST00000562118 RIMBP3Q9UFD9 1639 aa22.61■■□□□ 1.21
CDH1-204ENST00000562118 KIAA0586Q9BVV6 1533 aa22.58■■□□□ 1.21
CDH1-204ENST00000562118 KIF21BO75037 1637 aa22.54■■□□□ 1.2
CDH1-204ENST00000562118 CTTNBP2Q8WZ74 1663 aa22.52■■□□□ 1.2
CDH1-204ENST00000562118 CSRNP3Q8WYN3 585 aa22.52■■□□□ 1.2
CDH1-204ENST00000562118 IQGAP2Q13576 1575 aa22.49■■□□□ 1.19
CDH1-204ENST00000562118 ERCC6L2Q5T890 1561 aa22.46■■□□□ 1.19
CDH1-204ENST00000562118 ARAP1Q96P48 1450 aa22.45■■□□□ 1.18
CDH1-204ENST00000562118 UGGT2Q9NYU1 1516 aa22.42■■□□□ 1.18
CDH1-204ENST00000562118 JPH4Q96JJ6 628 aa22.39■■□□□ 1.17
CDH1-204ENST00000562118 PRG4Q92954 1404 aaPredicted RBP22.38■■□□□ 1.17
CDH1-204ENST00000562118 DISP1Q96F81 1524 aa22.34■■□□□ 1.17
CDH1-204ENST00000562118 GOLGA3Q08378 1498 aa22.31■■□□□ 1.16
CDH1-204ENST00000562118 FAM9AQ8IZU1 332 aaPredicted RBP22.3■■□□□ 1.16
CDH1-204ENST00000562118 KIAA0556O60303 1618 aa22.3■■□□□ 1.16
CDH1-204ENST00000562118 SAMD9Q5K651 1589 aa22.27■■□□□ 1.16
CDH1-204ENST00000562118 CARMIL2Q6F5E8 1435 aa22.23■■□□□ 1.15
CDH1-204ENST00000562118 TNIKQ9UKE5 1360 aa22.18■■□□□ 1.14
CDH1-204ENST00000562118 CYB5RLQ6IPT4 315 aa22.17■■□□□ 1.14
CDH1-204ENST00000562118 EFCAB5A4FU69 1503 aa22.16■■□□□ 1.14
CDH1-204ENST00000562118 ADCY10Q96PN6 1610 aa22.14■■□□□ 1.14
CDH1-204ENST00000562118 PTPRGP23470 1445 aa22.11■■□□□ 1.13
CDH1-204ENST00000562118 UHRF1BP1LA0JNW5 1464 aa22.1■■□□□ 1.13
CDH1-204ENST00000562118 ABCA8O94911 1581 aa22.07■■□□□ 1.12
CDH1-204ENST00000562118 ABCC2Q92887 1545 aa22.06■■□□□ 1.12
CDH1-204ENST00000562118 UACAQ9BZF9 1416 aa22.03■■□□□ 1.12
CDH1-204ENST00000562118 ARHGAP35Q9NRY4 1499 aa22.03■■□□□ 1.12
CDH1-204ENST00000562118 UBTFP17480 764 aaKnown RBP22■■□□□ 1.11
CDH1-204ENST00000562118 MAPKBP1O60336 1514 aa22■■□□□ 1.11
CDH1-204ENST00000562118 KDM5BQ9UGL1 1544 aa21.98■■□□□ 1.11
CDH1-204ENST00000562118 PLB1Q6P1J6 1458 aa21.97■■□□□ 1.11
CDH1-204ENST00000562118 FHOD3Q2V2M9 1422 aa21.97■■□□□ 1.11
CDH1-204ENST00000562118 RAPGEF6Q8TEU7 1601 aa21.94■■□□□ 1.1
CDH1-204ENST00000562118 ZCCHC11Q5TAX3 1644 aaKnown RBP21.92■■□□□ 1.1
CDH1-204ENST00000562118 EHMT2Q96KQ7 1210 aa21.88■■□□□ 1.09
CDH1-204ENST00000562118 NUP153P49790 1475 aaKnown RBP21.86■■□□□ 1.09
CDH1-204ENST00000562118 CLIP1P30622 1438 aa21.86■■□□□ 1.09
CDH1-204ENST00000562118 FMN1Q68DA7 1419 aa21.86■■□□□ 1.09
CDH1-204ENST00000562118 KIF13AQ9H1H9 1805 aa21.85■■□□□ 1.09
CDH1-204ENST00000562118 P3H3Q8IVL6 736 aa21.85■■□□□ 1.09
CDH1-204ENST00000562118 CEP162Q5TB80 1403 aa21.83■■□□□ 1.09
CDH1-204ENST00000562118 DIP2BQ9P265 1576 aa21.82■■□□□ 1.08
CDH1-204ENST00000562118 ATP10BO94823 1461 aa21.8■■□□□ 1.08
CDH1-204ENST00000562118 ABCC10Q5T3U5 1492 aa21.8■■□□□ 1.08
CDH1-204ENST00000562118 HECW1Q76N89 1606 aa21.79■■□□□ 1.08
CDH1-204ENST00000562118 TTBK1Q5TCY1 1321 aaPredicted RBP21.79■■□□□ 1.08
CDH1-204ENST00000562118 LRRIQ1Q96JM4 1722 aa21.78■■□□□ 1.08
CDH1-204ENST00000562118 LOC105371045A0A1W2PR82 267 aa21.78■■□□□ 1.08
CDH1-204ENST00000562118 ASXL2Q76L83 1435 aa21.78■■□□□ 1.08
CDH1-204ENST00000562118 RANGAP1P46060 587 aaPredicted RBP21.77■■□□□ 1.08
CDH1-204ENST00000562118 GLI2P10070 1586 aa21.77■■□□□ 1.08
CDH1-204ENST00000562118 PCF11O94913 1555 aaKnown RBP21.76■■□□□ 1.07
CDH1-204ENST00000562118 NPM1P06748 294 aaKnown RBP eCLIP21.76■■□□□ 1.07
CDH1-204ENST00000562118 CASKIN1Q8WXD9 1431 aa21.74■■□□□ 1.07
CDH1-204ENST00000562118 WDR7Q9Y4E6 1490 aa21.74■■□□□ 1.07
CDH1-204ENST00000562118 FYCO1Q9BQS8 1478 aa21.72■■□□□ 1.07
CDH1-204ENST00000562118 EPRSP07814 1512 aaKnown RBP21.7■■□□□ 1.07
CDH1-204ENST00000562118 MAP3K4Q9Y6R4 1608 aa21.67■■□□□ 1.06
CDH1-204ENST00000562118 CDK13Q14004 1512 aaKnown RBP21.66■■□□□ 1.06
CDH1-204ENST00000562118 CCDC18Q5T9S5 1454 aa21.64■■□□□ 1.06
CDH1-204ENST00000562118 PPRC1Q5VV67 1664 aaKnown RBP21.64■■□□□ 1.05
CDH1-204ENST00000562118 CFAP43Q8NDM7 1665 aa21.63■■□□□ 1.05
CDH1-204ENST00000562118 ABCA9Q8IUA7 1624 aa21.62■■□□□ 1.05
CDH1-204ENST00000562118 VPS8Q8N3P4 1428 aa21.6■■□□□ 1.05
CDH1-204ENST00000562118 TRHP20396 242 aaPredicted RBP21.56■■□□□ 1.04
CDH1-204ENST00000562118 FAM69CQ0P6D2 419 aa21.55■■□□□ 1.04
CDH1-204ENST00000562118 MAGI3Q5TCQ9 1506 aa21.55■■□□□ 1.04
CDH1-204ENST00000562118 TROQ12816 1431 aaPredicted RBP21.52■■□□□ 1.04
CDH1-204ENST00000562118 ARID3CA6NKF2 412 aa21.51■■□□□ 1.03
CDH1-204ENST00000562118 MAP3K1Q13233 1512 aa21.5■■□□□ 1.03
CDH1-204ENST00000562118 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.5■■□□□ 1.03
CDH1-204ENST00000562118 TSPOAP1O95153 1857 aa21.49■■□□□ 1.03
CDH1-204ENST00000562118 TTC37Q6PGP7 1564 aa21.49■■□□□ 1.03
CDH1-204ENST00000562118 KIF14Q15058 1648 aa21.48■■□□□ 1.03
CDH1-204ENST00000562118 PLEKHD1A6NEE1 506 aa21.47■■□□□ 1.03
CDH1-204ENST00000562118 TIAM1Q13009 1591 aa21.47■■□□□ 1.03
CDH1-204ENST00000562118 CD109Q6YHK3 1445 aa21.45■■□□□ 1.02
CDH1-204ENST00000562118 TEX14Q8IWB6 1497 aa21.45■■□□□ 1.02
CDH1-204ENST00000562118 ARAP3Q8WWN8 1544 aa21.45■■□□□ 1.02
CDH1-204ENST00000562118 CDK11AQ9UQ88 783 aaPredicted RBP21.43■■□□□ 1.02
CDH1-204ENST00000562118 EHBP1L1Q8N3D4 1523 aa21.42■■□□□ 1.02
CDH1-204ENST00000562118 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.41■■□□□ 1.02
CDH1-204ENST00000562118 HNRNPUL2Q1KMD3 747 aaKnown RBP21.41■■□□□ 1.02
CDH1-204ENST00000562118 MYO5CQ9NQX4 1742 aa21.41■■□□□ 1.02
CDH1-204ENST00000562118 KCNH8Q96L42 1107 aa21.39■■□□□ 1.01
CDH1-204ENST00000562118 ATP1B4Q9UN42 357 aaPredicted RBP21.38■■□□□ 1.01
CDH1-204ENST00000562118 CFAP74Q9C0B2 1584 aa21.37■■□□□ 1.01
CDH1-204ENST00000562118 NEO1Q92859 1461 aa21.37■■□□□ 1.01
CDH1-204ENST00000562118 PREX2Q70Z35 1606 aa21.37■■□□□ 1.01
CDH1-204ENST00000562118 CDC42BPAQ5VT25 1732 aa21.36■■□□□ 1.01
CDH1-204ENST00000562118 PLCH2O75038 1416 aa21.35■■□□□ 1.01
CDH1-204ENST00000562118 CDC42BPBQ9Y5S2 1711 aa21.35■■□□□ 1.01
CDH1-204ENST00000562118 KDM6BO15054 1643 aa21.34■■□□□ 1.01
CDH1-204ENST00000562118 LRRC9Q6ZRR7 1453 aa21.33■■□□□ 1.01
CDH1-204ENST00000562118 PHLDB1Q86UU1 1377 aa21.33■■□□□ 1
CDH1-204ENST00000562118 SUPT6HQ7KZ85 1726 aaKnown RBP21.31■■□□□ 1
CDH1-204ENST00000562118 COL17A1Q9UMD9 1497 aaPredicted RBP21.31■■□□□ 1
CDH1-204ENST00000562118 MTUS2Q5JR59 1369 aa21.29■■□□□ 1
CDH1-204ENST00000562118 FANCAO15360 1455 aa21.28■■□□□ 1
CDH1-204ENST00000562118 GPATCH8Q9UKJ3 1502 aaKnown RBP21.27■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms