RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 CTTNBP2Q8WZ74 1663 aa11.57□□□□□ -0.56
VPS39-204ENST00000561818 EHMT2Q96KQ7 1210 aa11.57□□□□□ -0.56
VPS39-204ENST00000561818 ZEB1P37275 1124 aaPredicted RBP11.56□□□□□ -0.56
VPS39-204ENST00000561818 THOC2Q8NI27 1593 aaKnown RBP11.54□□□□□ -0.56
VPS39-204ENST00000561818 AQRO60306 1485 aaKnown RBP eCLIP11.54□□□□□ -0.56
VPS39-204ENST00000561818 PBRM1Q86U86 1689 aa11.54□□□□□ -0.56
VPS39-204ENST00000561818 FMN1Q68DA7 1419 aa11.53□□□□□ -0.56
VPS39-204ENST00000561818 MAGI1Q96QZ7 1491 aaPredicted RBP11.53□□□□□ -0.56
VPS39-204ENST00000561818 ARAP1Q96P48 1450 aa11.52□□□□□ -0.56
VPS39-204ENST00000561818 ADAMTS12P58397 1594 aa11.52□□□□□ -0.57
VPS39-204ENST00000561818 ARHGAP35Q9NRY4 1499 aa11.51□□□□□ -0.57
VPS39-204ENST00000561818 DNAJC5BQ9UF47 199 aa11.5□□□□□ -0.57
VPS39-204ENST00000561818 TDRD9Q8NDG6 1382 aaKnown RBP11.5□□□□□ -0.57
VPS39-204ENST00000561818 FYCO1Q9BQS8 1478 aa11.49□□□□□ -0.57
VPS39-204ENST00000561818 HRCP23327 699 aa11.46□□□□□ -0.57
VPS39-204ENST00000561818 EIF4G3O43432 1585 aaKnown RBP11.45□□□□□ -0.58
VPS39-204ENST00000561818 SAMD9Q5K651 1589 aa11.45□□□□□ -0.58
VPS39-204ENST00000561818 IQGAP2Q13576 1575 aa11.45□□□□□ -0.58
VPS39-204ENST00000561818 SYNJ2O15056 1496 aa11.44□□□□□ -0.58
VPS39-204ENST00000561818 CASKIN1Q8WXD9 1431 aa11.43□□□□□ -0.58
VPS39-204ENST00000561818 KIAA0586Q9BVV6 1533 aa11.43□□□□□ -0.58
VPS39-204ENST00000561818 UGGT2Q9NYU1 1516 aa11.41□□□□□ -0.58
VPS39-204ENST00000561818 CCDC18Q5T9S5 1454 aa11.41□□□□□ -0.58
VPS39-204ENST00000561818 TIAM1Q13009 1591 aa11.41□□□□□ -0.58
VPS39-204ENST00000561818 GRIN2AQ12879 1464 aa11.4□□□□□ -0.58
VPS39-204ENST00000561818 CFAP43Q8NDM7 1665 aa11.4□□□□□ -0.59
VPS39-204ENST00000561818 SNAPC4Q5SXM2 1469 aa11.39□□□□□ -0.59
VPS39-204ENST00000561818 ZNF608Q9ULD9 1512 aaPredicted RBP11.36□□□□□ -0.59
VPS39-204ENST00000561818 POTEDQ86YR6 584 aa11.36□□□□□ -0.59
VPS39-204ENST00000561818 CARMIL2Q6F5E8 1435 aa11.35□□□□□ -0.59
VPS39-204ENST00000561818 RRBP1Q9P2E9 1410 aaKnown RBP11.35□□□□□ -0.59
VPS39-204ENST00000561818 HECW1Q76N89 1606 aa11.35□□□□□ -0.59
VPS39-204ENST00000561818 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.35□□□□□ -0.59
VPS39-204ENST00000561818 LRRC9Q6ZRR7 1453 aa11.35□□□□□ -0.59
VPS39-204ENST00000561818 PCF11O94913 1555 aaKnown RBP11.35□□□□□ -0.59
VPS39-204ENST00000561818 NUP160Q12769 1436 aa11.34□□□□□ -0.59
VPS39-204ENST00000561818 CHMP7Q8WUX9 453 aaPredicted RBP11.33□□□□□ -0.6
VPS39-204ENST00000561818 FHOD3Q2V2M9 1422 aa11.33□□□□□ -0.6
VPS39-204ENST00000561818 ACIN1Q9UKV3 1341 aaKnown RBP11.33□□□□□ -0.6
VPS39-204ENST00000561818 RANGAP1P46060 587 aaPredicted RBP11.32□□□□□ -0.6
VPS39-204ENST00000561818 EHBP1L1Q8N3D4 1523 aa11.31□□□□□ -0.6
VPS39-204ENST00000561818 CLSPNQ9HAW4 1339 aa11.31□□□□□ -0.6
VPS39-204ENST00000561818 CCNB3Q8WWL7 1395 aa11.3□□□□□ -0.6
VPS39-204ENST00000561818 KIAA0556O60303 1618 aa11.3□□□□□ -0.6
VPS39-204ENST00000561818 CDK11AQ9UQ88 783 aaPredicted RBP11.28□□□□□ -0.6
VPS39-204ENST00000561818 MTUS2Q5JR59 1369 aa11.28□□□□□ -0.6
VPS39-204ENST00000561818 SUPT6HQ7KZ85 1726 aaKnown RBP11.25□□□□□ -0.61
VPS39-204ENST00000561818 CEP170Q5SW79 1584 aa11.24□□□□□ -0.61
VPS39-204ENST00000561818 DISP1Q96F81 1524 aa11.23□□□□□ -0.61
VPS39-204ENST00000561818 PPARGC1BQ86YN6 1023 aaKnown RBP11.22□□□□□ -0.61
VPS39-204ENST00000561818 CCER1Q8TC90 406 aaPredicted RBP11.22□□□□□ -0.61
VPS39-204ENST00000561818 EPRSP07814 1512 aaKnown RBP11.21□□□□□ -0.61
VPS39-204ENST00000561818 MIA2Q96PC5 1412 aa11.21□□□□□ -0.61
VPS39-204ENST00000561818 RAPGEF6Q8TEU7 1601 aa11.2□□□□□ -0.62
VPS39-204ENST00000561818 KANK4Q5T7N3 995 aaPredicted RBP11.2□□□□□ -0.62
VPS39-204ENST00000561818 JPH4Q96JJ6 628 aa11.19□□□□□ -0.62
VPS39-204ENST00000561818 MYOM3Q5VTT5 1437 aa11.18□□□□□ -0.62
VPS39-204ENST00000561818 P3H3Q8IVL6 736 aa11.18□□□□□ -0.62
VPS39-204ENST00000561818 ATP1B4Q9UN42 357 aaPredicted RBP11.18□□□□□ -0.62
VPS39-204ENST00000561818 ARHGEF11O15085 1522 aa11.18□□□□□ -0.62
VPS39-204ENST00000561818 FGD6Q6ZV73 1430 aa11.18□□□□□ -0.62
VPS39-204ENST00000561818 FBLN2P98095 1184 aa11.16□□□□□ -0.62
VPS39-204ENST00000561818 NCOA2Q15596 1464 aa11.16□□□□□ -0.62
VPS39-204ENST00000561818 SHROOM2Q13796 1616 aa11.16□□□□□ -0.62
VPS39-204ENST00000561818 TTBK1Q5TCY1 1321 aaPredicted RBP11.15□□□□□ -0.62
VPS39-204ENST00000561818 AKNAQ7Z591 1439 aa11.15□□□□□ -0.62
VPS39-204ENST00000561818 PHLDB1Q86UU1 1377 aa11.15□□□□□ -0.63
VPS39-204ENST00000561818 TCOF1Q13428 1488 aaKnown RBP11.13□□□□□ -0.63
VPS39-204ENST00000561818 NUP153P49790 1475 aaKnown RBP11.12□□□□□ -0.63
VPS39-204ENST00000561818 CHD1O14646 1710 aa11.12□□□□□ -0.63
VPS39-204ENST00000561818 TROQ12816 1431 aaPredicted RBP11.12□□□□□ -0.63
VPS39-204ENST00000561818 ITSN2Q9NZM3 1697 aa11.12□□□□□ -0.63
VPS39-204ENST00000561818 ADCY10Q96PN6 1610 aa11.12□□□□□ -0.63
VPS39-204ENST00000561818 ABCA8O94911 1581 aa11.11□□□□□ -0.63
VPS39-204ENST00000561818 PTPRGP23470 1445 aa11.1□□□□□ -0.63
VPS39-204ENST00000561818 PRG4Q92954 1404 aaPredicted RBP11.1□□□□□ -0.63
VPS39-204ENST00000561818 HNRNPUL2Q1KMD3 747 aaKnown RBP11.1□□□□□ -0.63
VPS39-204ENST00000561818 SETD5Q9C0A6 1442 aa11.09□□□□□ -0.63
VPS39-204ENST00000561818 LRRIQ1Q96JM4 1722 aa11.09□□□□□ -0.63
VPS39-204ENST00000561818 CLASP1Q7Z460 1538 aa11.09□□□□□ -0.63
VPS39-204ENST00000561818 KIF14Q15058 1648 aa11.08□□□□□ -0.64
VPS39-204ENST00000561818 PTPN23Q9H3S7 1636 aa11.08□□□□□ -0.64
VPS39-204ENST00000561818 HFM1A2PYH4 1435 aa11.08□□□□□ -0.64
VPS39-204ENST00000561818 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.07□□□□□ -0.64
VPS39-204ENST00000561818 UHRF1BP1LA0JNW5 1464 aa11.06□□□□□ -0.64
VPS39-204ENST00000561818 CDK13Q14004 1512 aaKnown RBP11.06□□□□□ -0.64
VPS39-204ENST00000561818 PLEKHD1A6NEE1 506 aa11.06□□□□□ -0.64
VPS39-204ENST00000561818 FAM50AQ14320 339 aaKnown RBP11.06□□□□□ -0.64
VPS39-204ENST00000561818 TIMELESSQ9UNS1 1208 aa11.06□□□□□ -0.64
VPS39-204ENST00000561818 UACAQ9BZF9 1416 aa11.06□□□□□ -0.64
VPS39-204ENST00000561818 ROCK1Q13464 1354 aa11.05□□□□□ -0.64
VPS39-204ENST00000561818 PLB1Q6P1J6 1458 aa11.04□□□□□ -0.64
VPS39-204ENST00000561818 ABCC2Q92887 1545 aa11.04□□□□□ -0.64
VPS39-204ENST00000561818 MAGI3Q5TCQ9 1506 aa11.03□□□□□ -0.64
VPS39-204ENST00000561818 RAB3GAP2Q9H2M9 1393 aa11.03□□□□□ -0.64
VPS39-204ENST00000561818 RSPH4AQ5TD94 716 aa11.02□□□□□ -0.65
VPS39-204ENST00000561818 DHX57Q6P158 1386 aaKnown RBP11.02□□□□□ -0.65
VPS39-204ENST00000561818 PLEKHH2Q8IVE3 1493 aa11□□□□□ -0.65
VPS39-204ENST00000561818 GCC2Q8IWJ2 1684 aa11□□□□□ -0.65
VPS39-204ENST00000561818 ATP10BO94823 1461 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms