RNA–Protein interactions for RNA: ENST00000560998.5

RABGGTA-220, Transcript of Rab geranylgeranyltransferase subunit alpha, humanhuman

TSL 5

Gene RABGGTA, Length 1,997 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RABGGTA-220ENST00000560998 HNRNPUL2Q1KMD3 747 aaKnown RBP20.62■□□□□ 0.89
RABGGTA-220ENST00000560998 KANK4Q5T7N3 995 aaPredicted RBP20.61■□□□□ 0.89
RABGGTA-220ENST00000560998 KIF21AQ7Z4S6 1674 aa20.6■□□□□ 0.89
RABGGTA-220ENST00000560998 ABCA5Q8WWZ7 1642 aa20.55■□□□□ 0.88
RABGGTA-220ENST00000560998 MAP3K1Q13233 1512 aa20.53■□□□□ 0.88
RABGGTA-220ENST00000560998 CTTNBP2Q8WZ74 1663 aa20.52■□□□□ 0.87
RABGGTA-220ENST00000560998 RRBP1Q9P2E9 1410 aaKnown RBP20.51■□□□□ 0.87
RABGGTA-220ENST00000560998 TIAM1Q13009 1591 aa20.5■□□□□ 0.87
RABGGTA-220ENST00000560998 TDRD9Q8NDG6 1382 aaKnown RBP20.48■□□□□ 0.87
RABGGTA-220ENST00000560998 EFCAB5A4FU69 1503 aa20.48■□□□□ 0.87
RABGGTA-220ENST00000560998 FHAD1B1AJZ9 1412 aa20.48■□□□□ 0.87
RABGGTA-220ENST00000560998 GAPVD1Q14C86 1478 aa20.47■□□□□ 0.87
RABGGTA-220ENST00000560998 TARBP1Q13395 1621 aaKnown RBP20.46■□□□□ 0.87
RABGGTA-220ENST00000560998 PCF11O94913 1555 aaKnown RBP20.44■□□□□ 0.86
RABGGTA-220ENST00000560998 YTHDC1Q96MU7 727 aaKnown RBP20.43■□□□□ 0.86
RABGGTA-220ENST00000560998 CFAP43Q8NDM7 1665 aa20.42■□□□□ 0.86
RABGGTA-220ENST00000560998 FHOD3Q2V2M9 1422 aa20.41■□□□□ 0.86
RABGGTA-220ENST00000560998 CCNB3Q8WWL7 1395 aa20.4■□□□□ 0.86
RABGGTA-220ENST00000560998 ANP32EQ9BTT0 268 aa20.4■□□□□ 0.86
RABGGTA-220ENST00000560998 LRRC9Q6ZRR7 1453 aa20.4■□□□□ 0.86
RABGGTA-220ENST00000560998 P3H3Q8IVL6 736 aa20.39■□□□□ 0.86
RABGGTA-220ENST00000560998 MRC2Q9UBG0 1479 aa20.38■□□□□ 0.85
RABGGTA-220ENST00000560998 AQRO60306 1485 aaKnown RBP eCLIP20.37■□□□□ 0.854e-7■■■■□ 23.8
RABGGTA-220ENST00000560998 FYCO1Q9BQS8 1478 aa20.37■□□□□ 0.85
RABGGTA-220ENST00000560998 MIER1Q8N108 512 aa20.36■□□□□ 0.85
RABGGTA-220ENST00000560998 BCL11AQ9H165 835 aa20.36■□□□□ 0.85
RABGGTA-220ENST00000560998 CASKIN1Q8WXD9 1431 aa20.35■□□□□ 0.85
RABGGTA-220ENST00000560998 SAMD9Q5K651 1589 aa20.33■□□□□ 0.85
RABGGTA-220ENST00000560998 PBRM1Q86U86 1689 aa20.33■□□□□ 0.85
RABGGTA-220ENST00000560998 FMN1Q68DA7 1419 aa20.3■□□□□ 0.84
RABGGTA-220ENST00000560998 DHX57Q6P158 1386 aaKnown RBP20.29■□□□□ 0.84
RABGGTA-220ENST00000560998 PHLDB1Q86UU1 1377 aa20.28■□□□□ 0.84
RABGGTA-220ENST00000560998 SNAPC4Q5SXM2 1469 aa20.27■□□□□ 0.84
RABGGTA-220ENST00000560998 ADAMTS12P58397 1594 aa20.25■□□□□ 0.83
RABGGTA-220ENST00000560998 WDR62O43379 1518 aa20.25■□□□□ 0.83
RABGGTA-220ENST00000560998 ATP1B4Q9UN42 357 aaPredicted RBP20.25■□□□□ 0.83
RABGGTA-220ENST00000560998 SUPT16HQ9Y5B9 1047 aaKnown RBP20.24■□□□□ 0.83
RABGGTA-220ENST00000560998 IFT140Q96RY7 1462 aa20.21■□□□□ 0.83
RABGGTA-220ENST00000560998 GRIN2BQ13224 1484 aa20.21■□□□□ 0.83
RABGGTA-220ENST00000560998 ITGAEP38570 1179 aa20.19■□□□□ 0.82
RABGGTA-220ENST00000560998 LRRIQ1Q96JM4 1722 aa20.18■□□□□ 0.82
RABGGTA-220ENST00000560998 TSHZ2Q9NRE2 1034 aa20.18■□□□□ 0.82
RABGGTA-220ENST00000560998 THOC2Q8NI27 1593 aaKnown RBP20.17■□□□□ 0.82
RABGGTA-220ENST00000560998 ZNF608Q9ULD9 1512 aaPredicted RBP20.15■□□□□ 0.82
RABGGTA-220ENST00000560998 IQGAP2Q13576 1575 aa20.15■□□□□ 0.82
RABGGTA-220ENST00000560998 RAB3GAP2Q9H2M9 1393 aa20.13■□□□□ 0.81
RABGGTA-220ENST00000560998 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.12■□□□□ 0.81
RABGGTA-220ENST00000560998 FAM50AQ14320 339 aaKnown RBP20.11■□□□□ 0.81
RABGGTA-220ENST00000560998 SETD5Q9C0A6 1442 aa20.11■□□□□ 0.81
RABGGTA-220ENST00000560998 MTUS2Q5JR59 1369 aa20.08■□□□□ 0.81
RABGGTA-220ENST00000560998 ERCC6Q03468 1493 aa20.08■□□□□ 0.8
RABGGTA-220ENST00000560998 EIF4G3O43432 1585 aaKnown RBP20.07■□□□□ 0.8
RABGGTA-220ENST00000560998 FGD6Q6ZV73 1430 aa20.07■□□□□ 0.8
RABGGTA-220ENST00000560998 EHBP1L1Q8N3D4 1523 aa20.05■□□□□ 0.8
RABGGTA-220ENST00000560998 UGGT2Q9NYU1 1516 aa20.05■□□□□ 0.8
RABGGTA-220ENST00000560998 CCDC18Q5T9S5 1454 aa20.04■□□□□ 0.8
RABGGTA-220ENST00000560998 SUPT6HQ7KZ85 1726 aaKnown RBP20.04■□□□□ 0.8
RABGGTA-220ENST00000560998 HECW1Q76N89 1606 aa20.03■□□□□ 0.8
RABGGTA-220ENST00000560998 MAPKBP1O60336 1514 aa20.02■□□□□ 0.8
RABGGTA-220ENST00000560998 NCOA2Q15596 1464 aa20.02■□□□□ 0.8
RABGGTA-220ENST00000560998 KIAA0586Q9BVV6 1533 aa20■□□□□ 0.79
RABGGTA-220ENST00000560998 MAGI3Q5TCQ9 1506 aa19.99■□□□□ 0.79
RABGGTA-220ENST00000560998 GRIN2AQ12879 1464 aa19.99■□□□□ 0.79
RABGGTA-220ENST00000560998 MYOM3Q5VTT5 1437 aa19.99■□□□□ 0.79
RABGGTA-220ENST00000560998 ARHGEF11O15085 1522 aa19.98■□□□□ 0.79
RABGGTA-220ENST00000560998 EPRSP07814 1512 aaKnown RBP19.96■□□□□ 0.79
RABGGTA-220ENST00000560998 MAGI1Q96QZ7 1491 aaPredicted RBP19.96■□□□□ 0.79
RABGGTA-220ENST00000560998 KIAA0556O60303 1618 aa19.95■□□□□ 0.78
RABGGTA-220ENST00000560998 DISP1Q96F81 1524 aa19.94■□□□□ 0.78
RABGGTA-220ENST00000560998 PTPN23Q9H3S7 1636 aa19.91■□□□□ 0.78
RABGGTA-220ENST00000560998 CDK13Q14004 1512 aaKnown RBP19.91■□□□□ 0.78
RABGGTA-220ENST00000560998 PTPRKQ15262 1439 aa19.9■□□□□ 0.78
RABGGTA-220ENST00000560998 SYNJ2O15056 1496 aa19.89■□□□□ 0.77
RABGGTA-220ENST00000560998 HFM1A2PYH4 1435 aa19.88■□□□□ 0.77
RABGGTA-220ENST00000560998 CEP170Q5SW79 1584 aa19.87■□□□□ 0.77
RABGGTA-220ENST00000560998 TCOF1Q13428 1488 aaKnown RBP19.87■□□□□ 0.77
RABGGTA-220ENST00000560998 CHMP7Q8WUX9 453 aaPredicted RBP19.83■□□□□ 0.77
RABGGTA-220ENST00000560998 RAPGEF6Q8TEU7 1601 aa19.83■□□□□ 0.77
RABGGTA-220ENST00000560998 NAIPQ13075 1403 aa19.81■□□□□ 0.76
RABGGTA-220ENST00000560998 NUP153P49790 1475 aaKnown RBP19.81■□□□□ 0.76
RABGGTA-220ENST00000560998 MIA2Q96PC5 1412 aa19.8■□□□□ 0.76
RABGGTA-220ENST00000560998 NUP160Q12769 1436 aa19.79■□□□□ 0.76
RABGGTA-220ENST00000560998 SIN3AQ96ST3 1273 aa19.79■□□□□ 0.76
RABGGTA-220ENST00000560998 ARID3CA6NKF2 412 aa19.78■□□□□ 0.76
RABGGTA-220ENST00000560998 UACAQ9BZF9 1416 aa19.77■□□□□ 0.76
RABGGTA-220ENST00000560998 TIMELESSQ9UNS1 1208 aa19.76■□□□□ 0.75
RABGGTA-220ENST00000560998 GCC2Q8IWJ2 1684 aa19.75■□□□□ 0.75
RABGGTA-220ENST00000560998 FBLN2P98095 1184 aa19.74■□□□□ 0.75
RABGGTA-220ENST00000560998 AKNAQ7Z591 1439 aa19.73■□□□□ 0.75
RABGGTA-220ENST00000560998 CARMIL2Q6F5E8 1435 aa19.71■□□□□ 0.75
RABGGTA-220ENST00000560998 JPH4Q96JJ6 628 aa19.69■□□□□ 0.74
RABGGTA-220ENST00000560998 RBM19Q9Y4C8 960 aaKnown RBP19.69■□□□□ 0.74
RABGGTA-220ENST00000560998 PLB1Q6P1J6 1458 aa19.69■□□□□ 0.74
RABGGTA-220ENST00000560998 CDK11AQ9UQ88 783 aaPredicted RBP19.68■□□□□ 0.74
RABGGTA-220ENST00000560998 MYT1LQ9UL68 1186 aa19.67■□□□□ 0.74
RABGGTA-220ENST00000560998 RRP7BPQ9NSQ0 103 aa19.66■□□□□ 0.74
RABGGTA-220ENST00000560998 CHIC2Q9UKJ5 165 aa19.66■□□□□ 0.74
RABGGTA-220ENST00000560998 TROQ12816 1431 aaPredicted RBP19.66■□□□□ 0.74
RABGGTA-220ENST00000560998 KDM6BO15054 1643 aa19.64■□□□□ 0.73
RABGGTA-220ENST00000560998 DNMT1P26358 1616 aaKnown RBP19.64■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms