RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, humanhuman

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-223ENST00000560445 PRG4Q92954 1404 aaPredicted RBP24.2■■□□□ 1.46
TPM1-223ENST00000560445 JPH4Q96JJ6 628 aa24.2■■□□□ 1.46
TPM1-223ENST00000560445 ERCC6L2Q5T890 1561 aa24.2■■□□□ 1.46
TPM1-223ENST00000560445 KIAA0586Q9BVV6 1533 aa24.17■■□□□ 1.46
TPM1-223ENST00000560445 CARMIL1Q5VZK9 1371 aa24.13■■□□□ 1.45
TPM1-223ENST00000560445 CARMIL2Q6F5E8 1435 aa24.01■■□□□ 1.43
TPM1-223ENST00000560445 NPM1P06748 294 aaKnown RBP eCLIP24■■□□□ 1.43
TPM1-223ENST00000560445 IQGAP2Q13576 1575 aa23.99■■□□□ 1.43
TPM1-223ENST00000560445 RAPGEF2Q9Y4G8 1499 aa23.98■■□□□ 1.43
TPM1-223ENST00000560445 MAPKBP1O60336 1514 aa23.9■■□□□ 1.42
TPM1-223ENST00000560445 PTPRGP23470 1445 aa23.89■■□□□ 1.41
TPM1-223ENST00000560445 TNIKQ9UKE5 1360 aa23.89■■□□□ 1.41
TPM1-223ENST00000560445 ADCY10Q96PN6 1610 aa23.88■■□□□ 1.41
TPM1-223ENST00000560445 UGGT2Q9NYU1 1516 aa23.82■■□□□ 1.4
TPM1-223ENST00000560445 KIF13AQ9H1H9 1805 aa23.82■■□□□ 1.4
TPM1-223ENST00000560445 ABCC10Q5T3U5 1492 aa23.81■■□□□ 1.4
TPM1-223ENST00000560445 CTTNBP2Q8WZ74 1663 aa23.79■■□□□ 1.4
TPM1-223ENST00000560445 GOLGA3Q08378 1498 aa23.76■■□□□ 1.39
TPM1-223ENST00000560445 UHRF1BP1LA0JNW5 1464 aa23.75■■□□□ 1.39
TPM1-223ENST00000560445 ABCC2Q92887 1545 aa23.75■■□□□ 1.39
TPM1-223ENST00000560445 DISP1Q96F81 1524 aa23.75■■□□□ 1.39
TPM1-223ENST00000560445 PRXQ9BXM0 1461 aa23.75■■□□□ 1.39
TPM1-223ENST00000560445 DIP2BQ9P265 1576 aa23.74■■□□□ 1.39
TPM1-223ENST00000560445 FAM69CQ0P6D2 419 aa23.74■■□□□ 1.39
TPM1-223ENST00000560445 KIAA0556O60303 1618 aa23.73■■□□□ 1.39
TPM1-223ENST00000560445 UACAQ9BZF9 1416 aa23.73■■□□□ 1.39
TPM1-223ENST00000560445 EEA1Q15075 1411 aa23.71■■□□□ 1.39
TPM1-223ENST00000560445 TTBK1Q5TCY1 1321 aaPredicted RBP23.71■■□□□ 1.39
TPM1-223ENST00000560445 FAM9AQ8IZU1 332 aaPredicted RBP23.7■■□□□ 1.38
TPM1-223ENST00000560445 PLB1Q6P1J6 1458 aa23.68■■□□□ 1.38
TPM1-223ENST00000560445 CSRNP3Q8WYN3 585 aa23.61■■□□□ 1.37
TPM1-223ENST00000560445 ASXL2Q76L83 1435 aa23.6■■□□□ 1.37
TPM1-223ENST00000560445 KDM5BQ9UGL1 1544 aa23.6■■□□□ 1.37
TPM1-223ENST00000560445 GLI2P10070 1586 aa23.57■■□□□ 1.36
TPM1-223ENST00000560445 ZCCHC11Q5TAX3 1644 aaKnown RBP23.54■■□□□ 1.36
TPM1-223ENST00000560445 KDM6BO15054 1643 aa23.52■■□□□ 1.36
TPM1-223ENST00000560445 TSPOAP1O95153 1857 aa23.51■■□□□ 1.35
TPM1-223ENST00000560445 CHIC1Q5VXU3 224 aa23.5■■□□□ 1.35
TPM1-223ENST00000560445 ABCA8O94911 1581 aa23.48■■□□□ 1.35
TPM1-223ENST00000560445 EPRSP07814 1512 aaKnown RBP23.46■■□□□ 1.35
TPM1-223ENST00000560445 TEX14Q8IWB6 1497 aa23.46■■□□□ 1.35
TPM1-223ENST00000560445 WDR7Q9Y4E6 1490 aa23.46■■□□□ 1.35
TPM1-223ENST00000560445 SAMD9Q5K651 1589 aa23.43■■□□□ 1.34
TPM1-223ENST00000560445 KIF21BO75037 1637 aa23.42■■□□□ 1.34
TPM1-223ENST00000560445 MAP3K4Q9Y6R4 1608 aa23.41■■□□□ 1.34
TPM1-223ENST00000560445 PPRC1Q5VV67 1664 aaKnown RBP23.36■■□□□ 1.33
TPM1-223ENST00000560445 EFCAB5A4FU69 1503 aa23.34■■□□□ 1.33
TPM1-223ENST00000560445 CFAP43Q8NDM7 1665 aa23.34■■□□□ 1.33
TPM1-223ENST00000560445 RAPGEF6Q8TEU7 1601 aa23.31■■□□□ 1.32
TPM1-223ENST00000560445 P3H3Q8IVL6 736 aa23.31■■□□□ 1.32
TPM1-223ENST00000560445 MAGI3Q5TCQ9 1506 aa23.28■■□□□ 1.32
TPM1-223ENST00000560445 CD109Q6YHK3 1445 aa23.27■■□□□ 1.32
TPM1-223ENST00000560445 ATP10BO94823 1461 aa23.24■■□□□ 1.31
TPM1-223ENST00000560445 KCNH8Q96L42 1107 aa23.24■■□□□ 1.31
TPM1-223ENST00000560445 FHOD3Q2V2M9 1422 aa23.2■■□□□ 1.3
TPM1-223ENST00000560445 RANGAP1P46060 587 aaPredicted RBP23.2■■□□□ 1.3
TPM1-223ENST00000560445 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.19■■□□□ 1.3
TPM1-223ENST00000560445 UBTFP17480 764 aaKnown RBP23.19■■□□□ 1.3
TPM1-223ENST00000560445 HNRNPUL2Q1KMD3 747 aaKnown RBP23.19■■□□□ 1.3
TPM1-223ENST00000560445 PHLDB1Q86UU1 1377 aa23.17■■□□□ 1.3
TPM1-223ENST00000560445 NUP153P49790 1475 aaKnown RBP23.17■■□□□ 1.3
TPM1-223ENST00000560445 ABCA9Q8IUA7 1624 aa23.16■■□□□ 1.3
TPM1-223ENST00000560445 ARID3CA6NKF2 412 aa23.15■■□□□ 1.3
TPM1-223ENST00000560445 FMN1Q68DA7 1419 aa23.12■■□□□ 1.29
TPM1-223ENST00000560445 COL17A1Q9UMD9 1497 aaPredicted RBP23.11■■□□□ 1.29
TPM1-223ENST00000560445 PLEKHD1A6NEE1 506 aa23.1■■□□□ 1.29
TPM1-223ENST00000560445 ARAP3Q8WWN8 1544 aa23.08■■□□□ 1.29
TPM1-223ENST00000560445 NEO1Q92859 1461 aa23.07■■□□□ 1.28
TPM1-223ENST00000560445 HECW1Q76N89 1606 aa23.04■■□□□ 1.28
TPM1-223ENST00000560445 CFAP74Q9C0B2 1584 aa23.01■■□□□ 1.27
TPM1-223ENST00000560445 ADGRL1O94910 1474 aa23.01■■□□□ 1.27
TPM1-223ENST00000560445 KDM4FA0A1W2PPD8 638 aa23.01■■□□□ 1.27
TPM1-223ENST00000560445 ARHGAP35Q9NRY4 1499 aa23■■□□□ 1.27
TPM1-223ENST00000560445 CDK11AQ9UQ88 783 aaPredicted RBP23■■□□□ 1.27
TPM1-223ENST00000560445 EHMT2Q96KQ7 1210 aa22.99■■□□□ 1.27
TPM1-223ENST00000560445 ATP1B4Q9UN42 357 aaPredicted RBP22.93■■□□□ 1.26
TPM1-223ENST00000560445 CDK13Q14004 1512 aaKnown RBP22.92■■□□□ 1.26
TPM1-223ENST00000560445 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.92■■□□□ 1.26
TPM1-223ENST00000560445 FANCAO15360 1455 aa22.91■■□□□ 1.26
TPM1-223ENST00000560445 CLIP1P30622 1438 aa22.9■■□□□ 1.26
TPM1-223ENST00000560445 TTC37Q6PGP7 1564 aa22.88■■□□□ 1.25
TPM1-223ENST00000560445 DENND4BO75064 1496 aaPredicted RBP22.87■■□□□ 1.25
TPM1-223ENST00000560445 CCDC18Q5T9S5 1454 aa22.87■■□□□ 1.25
TPM1-223ENST00000560445 KIF14Q15058 1648 aa22.86■■□□□ 1.25
TPM1-223ENST00000560445 AKNAQ7Z591 1439 aa22.86■■□□□ 1.25
TPM1-223ENST00000560445 RAPGEF3O95398 923 aa22.83■■□□□ 1.25
TPM1-223ENST00000560445 TROQ12816 1431 aaPredicted RBP22.82■■□□□ 1.24
TPM1-223ENST00000560445 CASKIN1Q8WXD9 1431 aa22.82■■□□□ 1.24
TPM1-223ENST00000560445 MYO5CQ9NQX4 1742 aa22.82■■□□□ 1.24
TPM1-223ENST00000560445 PLCH2O75038 1416 aa22.82■■□□□ 1.24
TPM1-223ENST00000560445 FRMPD1Q5SYB0 1578 aa22.81■■□□□ 1.24
TPM1-223ENST00000560445 RICTORQ6R327 1708 aa22.79■■□□□ 1.24
TPM1-223ENST00000560445 FYCO1Q9BQS8 1478 aa22.79■■□□□ 1.24
TPM1-223ENST00000560445 ARHGEF40Q8TER5 1519 aa22.79■■□□□ 1.24
TPM1-223ENST00000560445 PCF11O94913 1555 aaKnown RBP22.78■■□□□ 1.24
TPM1-223ENST00000560445 EFCAB2Q5VUJ9 269 aa22.78■■□□□ 1.24
TPM1-223ENST00000560445 MAGI2Q86UL8 1455 aa22.78■■□□□ 1.24
TPM1-223ENST00000560445 ZMYM4Q5VZL5 1548 aa22.77■■□□□ 1.24
TPM1-223ENST00000560445 POGZQ7Z3K3 1410 aa22.73■■□□□ 1.23
TPM1-223ENST00000560445 ZFYVE16Q7Z3T8 1539 aa22.72■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms