RNA–Protein interactions for RNA: ENST00000560402.1

SMAD3-214, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-214ENST00000560402 JPH4Q96JJ6 628 aa23.7■■□□□ 1.38
SMAD3-214ENST00000560402 KIAA0586Q9BVV6 1533 aa23.68■■□□□ 1.38
SMAD3-214ENST00000560402 IGF1RP08069 1367 aa23.66■■□□□ 1.38
SMAD3-214ENST00000560402 KIF13AQ9H1H9 1805 aa23.64■■□□□ 1.38
SMAD3-214ENST00000560402 MAPKBP1O60336 1514 aa23.58■■□□□ 1.36
SMAD3-214ENST00000560402 ADCY10Q96PN6 1610 aa23.56■■□□□ 1.36
SMAD3-214ENST00000560402 CARMIL1Q5VZK9 1371 aa23.54■■□□□ 1.36
SMAD3-214ENST00000560402 IQGAP2Q13576 1575 aa23.5■■□□□ 1.35
SMAD3-214ENST00000560402 ABCC10Q5T3U5 1492 aa23.49■■□□□ 1.35
SMAD3-214ENST00000560402 DIP2BQ9P265 1576 aa23.48■■□□□ 1.35
SMAD3-214ENST00000560402 NPM1P06748 294 aaKnown RBP eCLIP23.47■■□□□ 1.35
SMAD3-214ENST00000560402 CARMIL2Q6F5E8 1435 aa23.45■■□□□ 1.34
SMAD3-214ENST00000560402 PTPRGP23470 1445 aa23.4■■□□□ 1.34
SMAD3-214ENST00000560402 TNIKQ9UKE5 1360 aa23.4■■□□□ 1.34
SMAD3-214ENST00000560402 RAPGEF2Q9Y4G8 1499 aa23.39■■□□□ 1.34
SMAD3-214ENST00000560402 FAM69CQ0P6D2 419 aa23.35■■□□□ 1.33
SMAD3-214ENST00000560402 ABCC2Q92887 1545 aa23.34■■□□□ 1.33
SMAD3-214ENST00000560402 UGGT2Q9NYU1 1516 aa23.34■■□□□ 1.33
SMAD3-214ENST00000560402 DISP1Q96F81 1524 aa23.33■■□□□ 1.32
SMAD3-214ENST00000560402 UHRF1BP1LA0JNW5 1464 aa23.32■■□□□ 1.32
SMAD3-214ENST00000560402 CTTNBP2Q8WZ74 1663 aa23.32■■□□□ 1.32
SMAD3-214ENST00000560402 AEBP2Q6ZN18 517 aaPredicted RBP23.31■■□□□ 1.32
SMAD3-214ENST00000560402 KIAA0556O60303 1618 aa23.3■■□□□ 1.32
SMAD3-214ENST00000560402 KDM6BO15054 1643 aa23.26■■□□□ 1.31
SMAD3-214ENST00000560402 TSPOAP1O95153 1857 aa23.26■■□□□ 1.31
SMAD3-214ENST00000560402 UACAQ9BZF9 1416 aa23.25■■□□□ 1.31
SMAD3-214ENST00000560402 PLB1Q6P1J6 1458 aa23.25■■□□□ 1.31
SMAD3-214ENST00000560402 GLI2P10070 1586 aa23.23■■□□□ 1.31
SMAD3-214ENST00000560402 ASXL2Q76L83 1435 aa23.21■■□□□ 1.31
SMAD3-214ENST00000560402 KDM5BQ9UGL1 1544 aa23.2■■□□□ 1.3
SMAD3-214ENST00000560402 TTBK1Q5TCY1 1321 aaPredicted RBP23.19■■□□□ 1.3
SMAD3-214ENST00000560402 ZCCHC11Q5TAX3 1644 aaKnown RBP23.18■■□□□ 1.3
SMAD3-214ENST00000560402 GOLGA3Q08378 1498 aa23.17■■□□□ 1.3
SMAD3-214ENST00000560402 PRXQ9BXM0 1461 aa23.16■■□□□ 1.3
SMAD3-214ENST00000560402 PPRC1Q5VV67 1664 aaKnown RBP23.16■■□□□ 1.3
SMAD3-214ENST00000560402 MAP3K4Q9Y6R4 1608 aa23.11■■□□□ 1.29
SMAD3-214ENST00000560402 EPRSP07814 1512 aaKnown RBP23.09■■□□□ 1.29
SMAD3-214ENST00000560402 ABCA8O94911 1581 aa23.06■■□□□ 1.28
SMAD3-214ENST00000560402 TEX14Q8IWB6 1497 aa23.05■■□□□ 1.28
SMAD3-214ENST00000560402 WDR7Q9Y4E6 1490 aa23.04■■□□□ 1.28
SMAD3-214ENST00000560402 CFAP43Q8NDM7 1665 aa22.98■■□□□ 1.27
SMAD3-214ENST00000560402 EEA1Q15075 1411 aa22.96■■□□□ 1.27
SMAD3-214ENST00000560402 SAMD9Q5K651 1589 aa22.94■■□□□ 1.26
SMAD3-214ENST00000560402 MAGI3Q5TCQ9 1506 aa22.89■■□□□ 1.26
SMAD3-214ENST00000560402 FAM9AQ8IZU1 332 aaPredicted RBP22.88■■□□□ 1.25
SMAD3-214ENST00000560402 CSRNP3Q8WYN3 585 aa22.88■■□□□ 1.25
SMAD3-214ENST00000560402 COL17A1Q9UMD9 1497 aaPredicted RBP22.86■■□□□ 1.25
SMAD3-214ENST00000560402 KDM4FA0A1W2PPD8 638 aa22.84■■□□□ 1.25
SMAD3-214ENST00000560402 CD109Q6YHK3 1445 aa22.83■■□□□ 1.25
SMAD3-214ENST00000560402 RAPGEF6Q8TEU7 1601 aa22.83■■□□□ 1.25
SMAD3-214ENST00000560402 ADGRL1O94910 1474 aa22.79■■□□□ 1.24
SMAD3-214ENST00000560402 KIF21BO75037 1637 aa22.79■■□□□ 1.24
SMAD3-214ENST00000560402 ATP10BO94823 1461 aa22.78■■□□□ 1.24
SMAD3-214ENST00000560402 ABCA9Q8IUA7 1624 aa22.77■■□□□ 1.24
SMAD3-214ENST00000560402 EFCAB5A4FU69 1503 aa22.74■■□□□ 1.23
SMAD3-214ENST00000560402 P3H3Q8IVL6 736 aa22.73■■□□□ 1.23
SMAD3-214ENST00000560402 KCNH8Q96L42 1107 aa22.73■■□□□ 1.23
SMAD3-214ENST00000560402 ARAP3Q8WWN8 1544 aa22.7■■□□□ 1.22
SMAD3-214ENST00000560402 NUP153P49790 1475 aaKnown RBP22.68■■□□□ 1.22
SMAD3-214ENST00000560402 FHOD3Q2V2M9 1422 aa22.67■■□□□ 1.22
SMAD3-214ENST00000560402 PHLDB1Q86UU1 1377 aa22.67■■□□□ 1.22
SMAD3-214ENST00000560402 NEO1Q92859 1461 aa22.64■■□□□ 1.21
SMAD3-214ENST00000560402 ARID3CA6NKF2 412 aa22.63■■□□□ 1.21
SMAD3-214ENST00000560402 CFAP74Q9C0B2 1584 aa22.58■■□□□ 1.2
SMAD3-214ENST00000560402 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.56■■□□□ 1.2
SMAD3-214ENST00000560402 HNRNPUL2Q1KMD3 747 aaKnown RBP22.56■■□□□ 1.2
SMAD3-214ENST00000560402 FRMPD1Q5SYB0 1578 aa22.54■■□□□ 1.2
SMAD3-214ENST00000560402 RANGAP1P46060 587 aaPredicted RBP22.52■■□□□ 1.2
SMAD3-214ENST00000560402 HECW1Q76N89 1606 aa22.5■■□□□ 1.19
SMAD3-214ENST00000560402 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.49■■□□□ 1.19
SMAD3-214ENST00000560402 PLEKHD1A6NEE1 506 aa22.49■■□□□ 1.19
SMAD3-214ENST00000560402 HECW2Q9P2P5 1572 aa22.49■■□□□ 1.19
SMAD3-214ENST00000560402 TTC37Q6PGP7 1564 aa22.48■■□□□ 1.19
SMAD3-214ENST00000560402 RICTORQ6R327 1708 aa22.48■■□□□ 1.19
SMAD3-214ENST00000560402 FMN1Q68DA7 1419 aa22.48■■□□□ 1.19
SMAD3-214ENST00000560402 CDK13Q14004 1512 aaKnown RBP22.46■■□□□ 1.19
SMAD3-214ENST00000560402 ARHGEF40Q8TER5 1519 aa22.46■■□□□ 1.19
SMAD3-214ENST00000560402 ADAMTSL3P82987 1691 aa22.45■■□□□ 1.18
SMAD3-214ENST00000560402 FANCAO15360 1455 aa22.44■■□□□ 1.18
SMAD3-214ENST00000560402 DENND4BO75064 1496 aaPredicted RBP22.43■■□□□ 1.18
SMAD3-214ENST00000560402 ARHGAP35Q9NRY4 1499 aa22.43■■□□□ 1.18
SMAD3-214ENST00000560402 CHIC1Q5VXU3 224 aa22.42■■□□□ 1.18
SMAD3-214ENST00000560402 BCORL1Q5H9F3 1711 aa22.42■■□□□ 1.18
SMAD3-214ENST00000560402 ZMYM4Q5VZL5 1548 aa22.41■■□□□ 1.18
SMAD3-214ENST00000560402 UBTFP17480 764 aaKnown RBP22.41■■□□□ 1.18
SMAD3-214ENST00000560402 AKNAQ7Z591 1439 aa22.4■■□□□ 1.18
SMAD3-214ENST00000560402 RAPGEF3O95398 923 aa22.4■■□□□ 1.18
SMAD3-214ENST00000560402 MYO5CQ9NQX4 1742 aa22.37■■□□□ 1.17
SMAD3-214ENST00000560402 KIF14Q15058 1648 aa22.35■■□□□ 1.17
SMAD3-214ENST00000560402 MADDQ8WXG6 1647 aa22.34■■□□□ 1.17
SMAD3-214ENST00000560402 PTPRMP28827 1452 aa22.34■■□□□ 1.17
SMAD3-214ENST00000560402 MAGI2Q86UL8 1455 aa22.33■■□□□ 1.16
SMAD3-214ENST00000560402 PLCH2O75038 1416 aa22.32■■□□□ 1.16
SMAD3-214ENST00000560402 ZFYVE16Q7Z3T8 1539 aa22.32■■□□□ 1.16
SMAD3-214ENST00000560402 LRRIQ1Q96JM4 1722 aa22.31■■□□□ 1.16
SMAD3-214ENST00000560402 CDK11AQ9UQ88 783 aaPredicted RBP22.3■■□□□ 1.16
SMAD3-214ENST00000560402 POGZQ7Z3K3 1410 aa22.29■■□□□ 1.16
SMAD3-214ENST00000560402 CLIP1P30622 1438 aa22.28■■□□□ 1.16
SMAD3-214ENST00000560402 TROQ12816 1431 aaPredicted RBP22.28■■□□□ 1.16
SMAD3-214ENST00000560402 EHMT2Q96KQ7 1210 aa22.27■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms