RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 NUP160Q12769 1436 aa10.52□□□□□ -0.73
SPG11-221ENST00000560299 CHMP7Q8WUX9 453 aaPredicted RBP10.52□□□□□ -0.73
SPG11-221ENST00000560299 CUL7Q14999 1698 aa10.52□□□□□ -0.73
SPG11-221ENST00000560299 CHD1O14646 1710 aa10.51□□□□□ -0.73
SPG11-221ENST00000560299 FAM9AQ8IZU1 332 aaPredicted RBP10.51□□□□□ -0.73
SPG11-221ENST00000560299 RNF39Q9H2S5 420 aa10.51□□□□□ -0.73
SPG11-221ENST00000560299 CLASP1Q7Z460 1538 aa10.51□□□□□ -0.73
SPG11-221ENST00000560299 CSRNP3Q8WYN3 585 aa10.48□□□□□ -0.73
SPG11-221ENST00000560299 CARMIL1Q5VZK9 1371 aa10.45□□□□□ -0.74
SPG11-221ENST00000560299 KIAA0586Q9BVV6 1533 aa10.43□□□□□ -0.74
SPG11-221ENST00000560299 FBLN2P98095 1184 aa10.43□□□□□ -0.74
SPG11-221ENST00000560299 SHROOM2Q13796 1616 aa10.43□□□□□ -0.74
SPG11-221ENST00000560299 ARHGEF11O15085 1522 aa10.43□□□□□ -0.74
SPG11-221ENST00000560299 RUSC2Q8N2Y8 1516 aa10.43□□□□□ -0.74
SPG11-221ENST00000560299 PRXQ9BXM0 1461 aa10.42□□□□□ -0.74
SPG11-221ENST00000560299 CEP170Q5SW79 1584 aa10.42□□□□□ -0.74
SPG11-221ENST00000560299 RAPGEF2Q9Y4G8 1499 aa10.41□□□□□ -0.74
SPG11-221ENST00000560299 RIMBP3CA6NJZ7 1639 aa10.38□□□□□ -0.75
SPG11-221ENST00000560299 RIMBP3BA6NNM3 1639 aa10.38□□□□□ -0.75
SPG11-221ENST00000560299 RIMBP3Q9UFD9 1639 aa10.38□□□□□ -0.75
SPG11-221ENST00000560299 LOC105371045A0A1W2PR82 267 aa10.38□□□□□ -0.75
SPG11-221ENST00000560299 HOXD11P31277 338 aaPredicted RBP10.37□□□□□ -0.75
SPG11-221ENST00000560299 JPH4Q96JJ6 628 aa10.36□□□□□ -0.75
SPG11-221ENST00000560299 KIF21BO75037 1637 aa10.36□□□□□ -0.75
SPG11-221ENST00000560299 UBTFP17480 764 aaKnown RBP10.35□□□□□ -0.75
SPG11-221ENST00000560299 C1QBPQ07021 282 aaKnown RBP10.35□□□□□ -0.75
SPG11-221ENST00000560299 GOLGA3Q08378 1498 aa10.35□□□□□ -0.75
SPG11-221ENST00000560299 EHMT2Q96KQ7 1210 aa10.34□□□□□ -0.75
SPG11-221ENST00000560299 UGGT2Q9NYU1 1516 aa10.33□□□□□ -0.76
SPG11-221ENST00000560299 ARAP1Q96P48 1450 aa10.32□□□□□ -0.76
SPG11-221ENST00000560299 IQGAP2Q13576 1575 aa10.31□□□□□ -0.76
SPG11-221ENST00000560299 CARMIL2Q6F5E8 1435 aa10.3□□□□□ -0.76
SPG11-221ENST00000560299 PRG4Q92954 1404 aaPredicted RBP10.3□□□□□ -0.76
SPG11-221ENST00000560299 TNIKQ9UKE5 1360 aa10.29□□□□□ -0.76
SPG11-221ENST00000560299 CTTNBP2Q8WZ74 1663 aa10.25□□□□□ -0.77
SPG11-221ENST00000560299 DISP1Q96F81 1524 aa10.25□□□□□ -0.77
SPG11-221ENST00000560299 CYB5RLQ6IPT4 315 aa10.25□□□□□ -0.77
SPG11-221ENST00000560299 PPP4R3CPQ6ZMV5 832 aa10.25□□□□□ -0.77
SPG11-221ENST00000560299 UHRF1BP1LA0JNW5 1464 aa10.23□□□□□ -0.77
SPG11-221ENST00000560299 ERCC6L2Q5T890 1561 aa10.23□□□□□ -0.77
SPG11-221ENST00000560299 PTPRGP23470 1445 aa10.22□□□□□ -0.77
SPG11-221ENST00000560299 KIAA0556O60303 1618 aa10.2□□□□□ -0.78
SPG11-221ENST00000560299 CEP162Q5TB80 1403 aa10.2□□□□□ -0.78
SPG11-221ENST00000560299 SAMD9Q5K651 1589 aa10.19□□□□□ -0.78
SPG11-221ENST00000560299 EFCAB5A4FU69 1503 aa10.19□□□□□ -0.78
SPG11-221ENST00000560299 MAPKBP1O60336 1514 aa10.18□□□□□ -0.78
SPG11-221ENST00000560299 RNF216Q9NWF9 866 aaPredicted RBP10.18□□□□□ -0.78
SPG11-221ENST00000560299 CLIP1P30622 1438 aa10.17□□□□□ -0.78
SPG11-221ENST00000560299 RANGAP1P46060 587 aaPredicted RBP10.17□□□□□ -0.78
SPG11-221ENST00000560299 CNKSR2Q8WXI2 1034 aa10.17□□□□□ -0.78
SPG11-221ENST00000560299 UACAQ9BZF9 1416 aa10.16□□□□□ -0.78
SPG11-221ENST00000560299 ABCC2Q92887 1545 aa10.16□□□□□ -0.78
SPG11-221ENST00000560299 KDM5BQ9UGL1 1544 aa10.15□□□□□ -0.78
SPG11-221ENST00000560299 ADCY10Q96PN6 1610 aa10.14□□□□□ -0.79
SPG11-221ENST00000560299 NPM1P06748 294 aaKnown RBP eCLIP10.12□□□□□ -0.79
SPG11-221ENST00000560299 ABCA8O94911 1581 aa10.12□□□□□ -0.79
SPG11-221ENST00000560299 PLB1Q6P1J6 1458 aa10.1□□□□□ -0.79
SPG11-221ENST00000560299 FMN1Q68DA7 1419 aa10.09□□□□□ -0.79
SPG11-221ENST00000560299 ABCC10Q5T3U5 1492 aa10.09□□□□□ -0.79
SPG11-221ENST00000560299 ARHGAP35Q9NRY4 1499 aa10.08□□□□□ -0.8
SPG11-221ENST00000560299 GLI2P10070 1586 aa10.07□□□□□ -0.8
SPG11-221ENST00000560299 APLP2Q06481 763 aa10.07□□□□□ -0.8
SPG11-221ENST00000560299 VPS8Q8N3P4 1428 aa10.07□□□□□ -0.8
SPG11-221ENST00000560299 P3H3Q8IVL6 736 aa10.06□□□□□ -0.8
SPG11-221ENST00000560299 ASXL2Q76L83 1435 aa10.03□□□□□ -0.8
SPG11-221ENST00000560299 RAPGEF6Q8TEU7 1601 aa10.03□□□□□ -0.8
SPG11-221ENST00000560299 DIP2BQ9P265 1576 aa10.02□□□□□ -0.81
SPG11-221ENST00000560299 FHOD3Q2V2M9 1422 aa10.02□□□□□ -0.81
SPG11-221ENST00000560299 ZCCHC11Q5TAX3 1644 aaKnown RBP10.02□□□□□ -0.81
SPG11-221ENST00000560299 ATP10BO94823 1461 aa10.02□□□□□ -0.81
SPG11-221ENST00000560299 NUP153P49790 1475 aaKnown RBP10.02□□□□□ -0.81
SPG11-221ENST00000560299 WDR7Q9Y4E6 1490 aa10.02□□□□□ -0.81
SPG11-221ENST00000560299 POTEHQ6S545 545 aa10□□□□□ -0.81
SPG11-221ENST00000560299 EPRSP07814 1512 aaKnown RBP10□□□□□ -0.81
SPG11-221ENST00000560299 KIF13AQ9H1H9 1805 aa10□□□□□ -0.81
SPG11-221ENST00000560299 CASKIN1Q8WXD9 1431 aa9.99□□□□□ -0.81
SPG11-221ENST00000560299 ATP1B4Q9UN42 357 aaPredicted RBP9.99□□□□□ -0.81
SPG11-221ENST00000560299 PHLDB1Q86UU1 1377 aa9.99□□□□□ -0.81
SPG11-221ENST00000560299 MAGI3Q5TCQ9 1506 aa9.97□□□□□ -0.81
SPG11-221ENST00000560299 HECW1Q76N89 1606 aa9.97□□□□□ -0.81
SPG11-221ENST00000560299 TRHP20396 242 aaPredicted RBP9.97□□□□□ -0.81
SPG11-221ENST00000560299 CCDC18Q5T9S5 1454 aa9.97□□□□□ -0.81
SPG11-221ENST00000560299 FYCO1Q9BQS8 1478 aa9.97□□□□□ -0.81
SPG11-221ENST00000560299 FAM69CQ0P6D2 419 aa9.96□□□□□ -0.82
SPG11-221ENST00000560299 CDK11AQ9UQ88 783 aaPredicted RBP9.96□□□□□ -0.82
SPG11-221ENST00000560299 TTBK1Q5TCY1 1321 aaPredicted RBP9.96□□□□□ -0.82
SPG11-221ENST00000560299 MAP3K4Q9Y6R4 1608 aa9.96□□□□□ -0.82
SPG11-221ENST00000560299 TEX14Q8IWB6 1497 aa9.95□□□□□ -0.82
SPG11-221ENST00000560299 CFAP43Q8NDM7 1665 aa9.95□□□□□ -0.82
SPG11-221ENST00000560299 ABCA9Q8IUA7 1624 aa9.94□□□□□ -0.82
SPG11-221ENST00000560299 PLEKHD1A6NEE1 506 aa9.94□□□□□ -0.82
SPG11-221ENST00000560299 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.94□□□□□ -0.82
SPG11-221ENST00000560299 MAP3K1Q13233 1512 aa9.93□□□□□ -0.82
SPG11-221ENST00000560299 ARAP3Q8WWN8 1544 aa9.93□□□□□ -0.82
SPG11-221ENST00000560299 PCF11O94913 1555 aaKnown RBP9.92□□□□□ -0.82
SPG11-221ENST00000560299 NEO1Q92859 1461 aa9.9□□□□□ -0.83
SPG11-221ENST00000560299 TROQ12816 1431 aaPredicted RBP9.9□□□□□ -0.83
SPG11-221ENST00000560299 CD109Q6YHK3 1445 aa9.9□□□□□ -0.83
SPG11-221ENST00000560299 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.89□□□□□ -0.83
SPG11-221ENST00000560299 HNRNPUL2Q1KMD3 747 aaKnown RBP9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms