RNA–Protein interactions for RNA: ENST00000559937.1

SMAD3-212, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 579 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-212ENST00000559937 RRBP1Q9P2E9 1410 aaKnown RBP12.21□□□□□ -0.45
SMAD3-212ENST00000559937 TARBP1Q13395 1621 aaKnown RBP12.2□□□□□ -0.46
SMAD3-212ENST00000559937 AQRO60306 1485 aaKnown RBP eCLIP12.19□□□□□ -0.466e-7■■■■□ 20.8
SMAD3-212ENST00000559937 MRC2Q9UBG0 1479 aa12.19□□□□□ -0.46
SMAD3-212ENST00000559937 PBRM1Q86U86 1689 aa12.18□□□□□ -0.46
SMAD3-212ENST00000559937 PCF11O94913 1555 aaKnown RBP12.17□□□□□ -0.46
SMAD3-212ENST00000559937 FYCO1Q9BQS8 1478 aa12.16□□□□□ -0.46
SMAD3-212ENST00000559937 RANGAP1P46060 587 aaPredicted RBP12.16□□□□□ -0.46
SMAD3-212ENST00000559937 GAPVD1Q14C86 1478 aa12.15□□□□□ -0.46
SMAD3-212ENST00000559937 SAMD9Q5K651 1589 aa12.15□□□□□ -0.46
SMAD3-212ENST00000559937 WDR62O43379 1518 aa12.15□□□□□ -0.46
SMAD3-212ENST00000559937 CLSPNQ9HAW4 1339 aa12.14□□□□□ -0.47
SMAD3-212ENST00000559937 LRRC9Q6ZRR7 1453 aa12.13□□□□□ -0.47
SMAD3-212ENST00000559937 HNRNPUL2Q1KMD3 747 aaKnown RBP12.11□□□□□ -0.47
SMAD3-212ENST00000559937 KANK4Q5T7N3 995 aaPredicted RBP12.11□□□□□ -0.47
SMAD3-212ENST00000559937 CASKIN1Q8WXD9 1431 aa12.11□□□□□ -0.47
SMAD3-212ENST00000559937 CCNB3Q8WWL7 1395 aa12.1□□□□□ -0.47
SMAD3-212ENST00000559937 FMN1Q68DA7 1419 aa12.1□□□□□ -0.47
SMAD3-212ENST00000559937 ADAMTS12P58397 1594 aa12.08□□□□□ -0.48
SMAD3-212ENST00000559937 SNAPC4Q5SXM2 1469 aa12.06□□□□□ -0.48
SMAD3-212ENST00000559937 TDRD9Q8NDG6 1382 aaKnown RBP12.05□□□□□ -0.48
SMAD3-212ENST00000559937 FHOD3Q2V2M9 1422 aa12.05□□□□□ -0.48
SMAD3-212ENST00000559937 LRRIQ1Q96JM4 1722 aa12.04□□□□□ -0.48
SMAD3-212ENST00000559937 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.04□□□□□ -0.48
SMAD3-212ENST00000559937 IFT140Q96RY7 1462 aa12.03□□□□□ -0.48
SMAD3-212ENST00000559937 DHX57Q6P158 1386 aaKnown RBP12.03□□□□□ -0.48
SMAD3-212ENST00000559937 GRIN2BQ13224 1484 aa12.02□□□□□ -0.48
SMAD3-212ENST00000559937 IQGAP2Q13576 1575 aa12.02□□□□□ -0.49
SMAD3-212ENST00000559937 SUPT6HQ7KZ85 1726 aaKnown RBP12□□□□□ -0.49
SMAD3-212ENST00000559937 ZNF316A6NFI3 1004 aaPredicted RBP11.99□□□□□ -0.49
SMAD3-212ENST00000559937 EHBP1L1Q8N3D4 1523 aa11.99□□□□□ -0.49
SMAD3-212ENST00000559937 HECW1Q76N89 1606 aa11.99□□□□□ -0.49
SMAD3-212ENST00000559937 CCDC18Q5T9S5 1454 aa11.97□□□□□ -0.49
SMAD3-212ENST00000559937 PHLDB1Q86UU1 1377 aa11.97□□□□□ -0.49
SMAD3-212ENST00000559937 UGGT2Q9NYU1 1516 aa11.96□□□□□ -0.49
SMAD3-212ENST00000559937 DIEXFQ68CQ4 756 aaKnown RBP11.95□□□□□ -0.5
SMAD3-212ENST00000559937 EIF4G3O43432 1585 aaKnown RBP11.95□□□□□ -0.5
SMAD3-212ENST00000559937 SETD5Q9C0A6 1442 aa11.94□□□□□ -0.5
SMAD3-212ENST00000559937 P3H3Q8IVL6 736 aa11.93□□□□□ -0.5
SMAD3-212ENST00000559937 OSCARQ8IYS5 282 aa11.93□□□□□ -0.5
SMAD3-212ENST00000559937 FGD6Q6ZV73 1430 aa11.93□□□□□ -0.5
SMAD3-212ENST00000559937 ARHGEF11O15085 1522 aa11.92□□□□□ -0.5
SMAD3-212ENST00000559937 RAB3GAP2Q9H2M9 1393 aa11.92□□□□□ -0.5
SMAD3-212ENST00000559937 MTUS2Q5JR59 1369 aa11.91□□□□□ -0.5
SMAD3-212ENST00000559937 KIAA0586Q9BVV6 1533 aa11.91□□□□□ -0.5
SMAD3-212ENST00000559937 ZNF608Q9ULD9 1512 aaPredicted RBP11.91□□□□□ -0.5
SMAD3-212ENST00000559937 MAGI1Q96QZ7 1491 aaPredicted RBP11.9□□□□□ -0.5
SMAD3-212ENST00000559937 KIAA0556O60303 1618 aa11.89□□□□□ -0.51
SMAD3-212ENST00000559937 MAPKBP1O60336 1514 aa11.89□□□□□ -0.51
SMAD3-212ENST00000559937 NCOA2Q15596 1464 aa11.89□□□□□ -0.51
SMAD3-212ENST00000559937 MYOM3Q5VTT5 1437 aa11.88□□□□□ -0.51
SMAD3-212ENST00000559937 GRIN2AQ12879 1464 aa11.88□□□□□ -0.51
SMAD3-212ENST00000559937 PTPN23Q9H3S7 1636 aa11.87□□□□□ -0.51
SMAD3-212ENST00000559937 TCOF1Q13428 1488 aaKnown RBP11.86□□□□□ -0.51
SMAD3-212ENST00000559937 GCC2Q8IWJ2 1684 aa11.86□□□□□ -0.51
SMAD3-212ENST00000559937 EPRSP07814 1512 aaKnown RBP11.86□□□□□ -0.51
SMAD3-212ENST00000559937 ATP1B4Q9UN42 357 aaPredicted RBP11.85□□□□□ -0.51
SMAD3-212ENST00000559937 MAGI3Q5TCQ9 1506 aa11.85□□□□□ -0.51
SMAD3-212ENST00000559937 RAPGEF6Q8TEU7 1601 aa11.84□□□□□ -0.51
SMAD3-212ENST00000559937 DISP1Q96F81 1524 aa11.83□□□□□ -0.52
SMAD3-212ENST00000559937 FAM50AQ14320 339 aaKnown RBP11.83□□□□□ -0.52
SMAD3-212ENST00000559937 SYNJ2O15056 1496 aa11.83□□□□□ -0.52
SMAD3-212ENST00000559937 HFM1A2PYH4 1435 aa11.82□□□□□ -0.52
SMAD3-212ENST00000559937 AKNAQ7Z591 1439 aa11.82□□□□□ -0.52
SMAD3-212ENST00000559937 MIA2Q96PC5 1412 aa11.81□□□□□ -0.52
SMAD3-212ENST00000559937 ITGAEP38570 1179 aa11.81□□□□□ -0.52
SMAD3-212ENST00000559937 TIMELESSQ9UNS1 1208 aa11.81□□□□□ -0.52
SMAD3-212ENST00000559937 CEP170Q5SW79 1584 aa11.8□□□□□ -0.52
SMAD3-212ENST00000559937 ADCY10Q96PN6 1610 aa11.78□□□□□ -0.52
SMAD3-212ENST00000559937 CDK13Q14004 1512 aaKnown RBP11.78□□□□□ -0.52
SMAD3-212ENST00000559937 CENPBP07199 599 aaPredicted RBP11.78□□□□□ -0.52
SMAD3-212ENST00000559937 ITSN2Q9NZM3 1697 aa11.78□□□□□ -0.52
SMAD3-212ENST00000559937 NUP160Q12769 1436 aa11.77□□□□□ -0.52
SMAD3-212ENST00000559937 UACAQ9BZF9 1416 aa11.77□□□□□ -0.52
SMAD3-212ENST00000559937 ACIN1Q9UKV3 1341 aaKnown RBP11.76□□□□□ -0.53
SMAD3-212ENST00000559937 NAIPQ13075 1403 aa11.75□□□□□ -0.53
SMAD3-212ENST00000559937 PTPRKQ15262 1439 aa11.75□□□□□ -0.53
SMAD3-212ENST00000559937 NUP153P49790 1475 aaKnown RBP11.75□□□□□ -0.53
SMAD3-212ENST00000559937 DNMT1P26358 1616 aaKnown RBP11.75□□□□□ -0.53
SMAD3-212ENST00000559937 FBLN2P98095 1184 aa11.73□□□□□ -0.53
SMAD3-212ENST00000559937 CARMIL2Q6F5E8 1435 aa11.73□□□□□ -0.53
SMAD3-212ENST00000559937 ADGBQ8N7X0 1667 aa11.71□□□□□ -0.53
SMAD3-212ENST00000559937 ABCA8O94911 1581 aa11.7□□□□□ -0.54
SMAD3-212ENST00000559937 TROQ12816 1431 aaPredicted RBP11.69□□□□□ -0.54
SMAD3-212ENST00000559937 CROCC2H7BZ55 1655 aa11.69□□□□□ -0.54
SMAD3-212ENST00000559937 ROCK1Q13464 1354 aa11.68□□□□□ -0.54
SMAD3-212ENST00000559937 RIMBP3CA6NJZ7 1639 aa11.68□□□□□ -0.54
SMAD3-212ENST00000559937 RIMBP3BA6NNM3 1639 aa11.68□□□□□ -0.54
SMAD3-212ENST00000559937 RIMBP3Q9UFD9 1639 aa11.68□□□□□ -0.54
SMAD3-212ENST00000559937 CHMP7Q8WUX9 453 aaPredicted RBP11.68□□□□□ -0.54
SMAD3-212ENST00000559937 CDK11AQ9UQ88 783 aaPredicted RBP11.68□□□□□ -0.54
SMAD3-212ENST00000559937 MIER1Q8N108 512 aa11.67□□□□□ -0.54
SMAD3-212ENST00000559937 CHD1O14646 1710 aa11.66□□□□□ -0.54
SMAD3-212ENST00000559937 SCAF1Q9H7N4 1312 aaKnown RBP11.66□□□□□ -0.54
SMAD3-212ENST00000559937 NEUROD1Q13562 356 aa11.65□□□□□ -0.54
SMAD3-212ENST00000559937 CYB5RLQ6IPT4 315 aa11.65□□□□□ -0.54
SMAD3-212ENST00000559937 DAPK1P53355 1430 aa11.65□□□□□ -0.54
SMAD3-212ENST00000559937 CDC42BPAQ5VT25 1732 aa11.64□□□□□ -0.55
SMAD3-212ENST00000559937 SHROOM2Q13796 1616 aa11.64□□□□□ -0.55
SMAD3-212ENST00000559937 KIF14Q15058 1648 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms